deca-ala-solv_imd-demo.vmd
a2ea5509ff14efficient_neuronet

deca-ala-solv_imd-demo.vmd
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			#!/usr/local/bin/vmd
			# Display settings
			display projection Orthographic

			mol new deca-ala-solv.psf type psf first 0 last -1 step 1 filebonds 1 autobonds 1 waitfor all
			mol delrep 0 top
			mol representation Licorice
			mol color Name
			mol selection {protein}
			mol material Glossy
			mol addrep top
			mol selupdate 0 top 1
			mol representation HBonds 4.000000 30.000000 3.000000
			mol color ColorID 4
			mol selection {same residue as within 3.1 of protein}
			mol material Opaque
			mol addrep top
			mol selupdate 1 top 1
			mol representation Lines 2.000000
			mol color Name
			mol selection {(same residue as within 3.1 of protein) and water}
			mol addrep top
			mol selupdate 2 top 1

			imd connect localhost 5678
			sleep 1
			display resetview
			mouse mode forceres