in.nemd
31a4282f405fefficient_neuronet

in.nemd
View Options

			# 2d NEMD simulation

			units lj
			atom_style atomic
			dimension 2

			lattice sq2 0.8442
			region box prism 0 10 0 8 -0.5 0.5 0 0 0
			create_box 2 box
			create_atoms 1 box
			mass * 1.0

			velocity all create 1.44 87287 loop geom

			region slice block 4 6 INF INF INF INF
			set region slice type 2

			pair_style lj/cut 2.5
			pair_coeff * * 1.0 1.0 1.0

			neighbor 0.3 bin
			neigh_modify delay 0 every 1

			fix 1 all nvt/sllod temp 1.0 1.0 1.0 tchain 1
			fix 2 all deform 1 xy erate 0.01 remap v

			#dump 1 all custom 5000 dump.nemd id type x y z

			#dump 2 all image 1000 image.*.jpg type type adiam 1.2
			#dump_modify 2 pad 5

			#dump 3 all movie 1000 movie.mpg type type adiam 1.2
			#dump_modify 3 pad 5

			thermo 1000

			run 50000