Homec4science
Diffusion lammps (efficient_neuronet) Browse

lammps/examples/qeq/log.15May15.qeq.buck.g++.1
6864dfa2d184efficient_neuronet

Last Change
Raw File

log.15May15.qeq.buck.g++.1
View Options

LAMMPS (30 Apr 2015)
# This example demonstrates the use of various fix qeq variants with
# that defines and uses charges, in this case pair_style buck/coul/long
units metal
atom_style charge
read_data data.aC
orthogonal box = (0 0 0) to (25.1583 25.1583 28.0203)
1 by 1 by 1 MPI processor grid
reading atoms ...
1200 atoms
pair_style buck/coul/long 12.0
pair_coeff 2 2 1388.77 .3623188 175.0
pair_coeff 1 2 18003 .2052124 133.5381
pair_coeff 1 1 0 .1 0
kspace_style ewald 1e-6
neighbor 1.0 bin
neigh_modify delay 0 every 1 check yes
group type1 type 1
400 atoms in group type1
compute charge1 type1 property/atom q
compute q1 type1 reduce ave c_charge1
group type2 type 2
800 atoms in group type2
compute charge2 type2 property/atom q
compute q2 type2 reduce ave c_charge2
variable qtot equal count(type1)*c_q1+count(type2)*c_q2
thermo_style custom step pe c_q1 c_q2 v_qtot
thermo 1
timestep 0.0001
velocity all create 300.0 1281937
fix 1 all nve
#fix 2 all qeq/point 1 10 1.0e-6 100 param.qeq2
#fix 2 all qeq/shielded 1 10 1.0e-6 100 param.qeq2
#fix 2 all qeq/slater 1 10 1.0e-6 100 param.qeq2
fix 2 all qeq/dynamic 1 10 1.0e-2 100 param.qeq2
run 10
Ewald initialization ...
G vector (1/distance) = 0.305064
estimated absolute RMS force accuracy = 2.07629e-05
estimated relative force accuracy = 1.44191e-06
KSpace vectors: actual max1d max3d = 1696 10 4630
kxmax kymax kzmax = 9 9 10
Neighbor list info ...
2 neighbor list requests
update every 1 steps, delay 0 steps, check yes
master list distance cutoff = 13
Memory usage per processor = 11.5639 Mbytes
Step PotEng q1 q2 qtot
0 -3427.2912 0.85155361 -0.4257768 1.9326762e-12
1 -3427.2952 0.85155361 -0.4257768 1.9326762e-12
2 -3427.3702 0.85155361 -0.4257768 1.9326762e-12
3 -3427.5147 0.85155361 -0.4257768 1.9326762e-12
4 -3427.7293 0.85155361 -0.4257768 1.9326762e-12
5 -3428.0139 0.85155361 -0.4257768 1.9326762e-12
6 -3437.0197 0.85284334 -0.42642167 1.080025e-12
7 -3439.6557 0.85317232 -0.42658616 1.1368684e-12
8 -3442.0863 0.85345972 -0.42672986 7.9580786e-13
9 -3446.9116 0.85409203 -0.42704601 1.3642421e-12
10 -3447.5546 0.85409203 -0.42704601 1.3642421e-12
Loop time of 0.45708 on 1 procs for 10 steps with 1200 atoms
Pair time (%) = 0.221585 (48.4783)
Kspce time (%) = 0.175467 (38.3887)
Neigh time (%) = 0 (0)
Comm time (%) = 0.000458956 (0.10041)
Outpt time (%) = 0.000310183 (0.0678618)
Other time (%) = 0.0592589 (12.9647)
Nlocal: 1200 ave 1200 max 1200 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 8100 ave 8100 max 8100 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 367600 ave 367600 max 367600 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 367600
Ave neighs/atom = 306.333
Neighbor list builds = 0
Dangerous builds = 0
c4science · Help