Homec4science
Diffusion lammps (efficient_neuronet) Browse

lammps/examples/rigid/log.rigid.poems.10Sep10.linux.4
79ec2261bb82efficient_neuronet

Last Change
Raw File

log.rigid.poems.10Sep10.linux.4
View Options

LAMMPS (10 Sep 2010)
# Simple rigid body system
units lj
atom_style atomic
pair_style lj/cut 2.5
read_data data.rigid
orthogonal box = (-12 -12 -12) to (12 12 12)
1 by 2 by 2 processor grid
81 atoms
velocity all create 100.0 4928459
# unconnected bodies
#group clump1 id <> 1 9
#group clump2 id <> 10 18
#group clump3 id <> 19 27
#group clump4 id <> 28 36
#group clump5 id <> 37 45
#group clump6 id <> 46 54
#group clump7 id <> 55 63
#group clump8 id <> 64 72
#group clump9 id <> 73 81
#fix 1 all rigid group 9 clump1 clump2 clump3 clump4 clump5 # clump6 clump7 clump8 clump9
# 1 chain of connected bodies
group clump1 id <> 1 9
9 atoms in group clump1
group clump2 id <> 9 18
10 atoms in group clump2
group clump3 id <> 18 27
10 atoms in group clump3
group clump4 id <> 27 36
10 atoms in group clump4
group clump5 id <> 36 45
10 atoms in group clump5
group clump6 id <> 45 54
10 atoms in group clump6
group clump7 id <> 54 63
10 atoms in group clump7
group clump8 id <> 63 72
10 atoms in group clump8
group clump9 id <> 72 81
10 atoms in group clump9
fix 1 all poems group clump1 clump2 clump3 clump4 clump5 clump6 clump7 clump8 clump9
1 clusters, 9 bodies, 8 joints, 81 atoms
# 2 chains of connected bodies
#group clump1 id <> 1 9
#group clump2 id <> 9 18
#group clump3 id <> 18 27
#group clump4 id <> 27 36
#group clump5 id <> 37 45
#group clump6 id <> 45 54
#group clump7 id <> 54 63
#group clump8 id <> 63 72
#group clump9 id <> 72 81
#fix 1 all poems group clump1 clump2 clump3 clump4
#fix 2 all poems group clump5 clump6 clump7 clump8 clump9
neigh_modify exclude group clump1 clump1
neigh_modify exclude group clump2 clump2
neigh_modify exclude group clump3 clump3
neigh_modify exclude group clump4 clump4
neigh_modify exclude group clump5 clump5
neigh_modify exclude group clump6 clump6
neigh_modify exclude group clump7 clump7
neigh_modify exclude group clump8 clump8
neigh_modify exclude group clump9 clump9
thermo 100
dump 1 all atom 50 dump.rigid
timestep 0.0001
thermo 50
run 10000
Memory usage per processor = 1.66715 Mbytes
Step Temp E_pair E_mol TotEng Press
0 217.7783 3430.3907 0 3466.6871 -2.7403788
50 13679.637 1404.2468 0 3684.1863 12.446066
100 16777.225 888.87665 0 3685.0808 -31.828677
150 19595.365 418.45042 0 3684.3446 40.709078
200 18524.188 596.47273 0 3683.8375 -0.8159371
250 21015.789 180.96521 0 3683.5967 -10.042469
300 20785.513 219.25314 0 3683.5053 2.6452719
350 21072.46 171.2554 0 3683.3321 7.0609024
400 19956.414 356.36381 0 3682.4328 19.320259
450 20724.42 227.73284 0 3681.8028 8.1259249
500 20152.578 322.71466 0 3681.4777 5.4929878
550 20017.022 345.29701 0 3681.4673 5.4661666
600 17897.743 698.72196 0 3681.6791 3.2854742
650 17297.758 796.60256 0 3679.5623 15.191113
700 18581.934 584.29715 0 3681.2861 5.1588289
750 21774.158 52.821062 0 3681.8474 -10.775664
800 21604.055 81.188546 0 3681.8644 -3.2045743
850 17821.483 711.53827 0 3681.7854 7.4384277
900 21033.292 175.98127 0 3681.5299 -16.345167
950 20968.166 186.59847 0 3681.2929 -2.330456
1000 20490.66 266.19375 0 3681.3037 11.787983
1050 20222.396 310.94072 0 3681.34 -8.3459539
1100 21321.687 127.61533 0 3681.2299 -1.2184717
1150 20849.582 206.01695 0 3680.9472 -0.86699149
1200 21815.003 45.317414 0 3681.1512 1.5988314
1250 18655.437 572.41453 0 3681.654 10.064078
1300 20780.781 217.36506 0 3680.8286 6.0538614
1350 20558.971 254.36483 0 3680.8601 -3.6773949
1400 21485.029 99.812918 0 3680.6511 -16.185473
1450 21771.107 52.159612 0 3680.6775 -2.4756672
1500 21520.948 93.503927 0 3680.3286 2.1023576
1550 21351.418 121.68136 0 3680.2511 5.5159944
1600 20778.805 216.92178 0 3680.0559 15.089189
1650 21477.638 100.21835 0 3679.8247 -1.104575
1700 18501.339 596.47914 0 3680.0357 -15.67968
1750 18563.643 587.34778 0 3681.2882 33.532208
1800 19110.185 494.82346 0 3679.8543 18.024046
1850 21364.19 119.23551 0 3679.9339 2.5291101
1900 20146.625 322.14891 0 3679.9197 5.7313338
1950 20692.673 231.25313 0 3680.0319 4.2977799
2000 20943.903 189.11247 0 3679.7629 -22.64511
2050 19668.052 401.8307 0 3679.8394 3.6251977
2100 20280.44 299.76202 0 3679.8353 7.4807951
2150 19181.861 483.52185 0 3680.4987 22.620622
2200 21300.172 130.70342 0 3680.7322 4.7102443
2250 20486.913 266.64442 0 3681.1299 -8.6458457
2300 18653.027 572.26391 0 3681.1018 -5.2635159
2350 21513.552 95.610092 0 3681.2021 -9.3625621
2400 21466.226 103.5721 0 3681.2765 -29.560111
2450 20100.224 332.25127 0 3682.2886 35.738713
2500 20764.495 221.65088 0 3682.4001 -12.466719
2550 20436.558 276.16697 0 3682.2599 -22.417896
2600 21466.421 104.54383 0 3682.2806 -10.079734
2650 20818.841 212.55486 0 3682.3617 5.1296424
2700 18566.09 588.30634 0 3682.6546 22.284023
2750 20785.598 217.95478 0 3682.2211 -8.0249122
2800 21039.895 175.54429 0 3682.1935 -7.0764191
2850 16833.765 876.81641 0 3682.4439 33.045984
2900 19316.915 462.65845 0 3682.1443 7.9387523
2950 20539.995 258.69676 0 3682.0292 2.0068501
3000 20618.521 245.74832 0 3682.1685 -0.17465964
3050 18676.2 569.7615 0 3682.4615 -6.5647966
3100 19275.207 469.35107 0 3681.8856 -2.0438241
3150 18546.545 590.9925 0 3682.0833 11.076497
3200 20537.777 259.07579 0 3682.0386 10.619919
3250 20457.361 272.79279 0 3682.353 -0.51808338
3300 19938.928 359.03731 0 3682.192 -4.3702356
3350 21653.021 73.366978 0 3682.2037 -0.64700807
3400 20502.085 264.91433 0 3681.9285 -9.0284947
3450 19964.063 354.66015 0 3682.0041 11.708182
3500 19749.771 389.98871 0 3681.6172 4.3404985
3550 20150.491 323.69184 0 3682.1071 -1.1274774
3600 21129.281 160.46162 0 3682.0085 -7.7325499
3650 21213.734 146.18403 0 3681.8063 -4.9238973
3700 21054.384 172.69517 0 3681.7591 2.9949051
3750 21130.694 159.46294 0 3681.2452 -4.5868816
3800 21388.933 117.05872 0 3681.881 -9.9552464
3850 21389.666 116.87246 0 3681.8167 -3.1666659
3900 19786.081 383.85693 0 3681.5371 -0.46202464
3950 20326.368 294.364 0 3682.092 10.249119
4000 21346.923 124.20853 0 3682.029 1.6690854
4050 21079.676 168.99963 0 3682.279 -9.4593928
4100 21363.847 121.88561 0 3682.5267 -3.4424161
4150 19183.8 484.96147 0 3682.2615 5.2890083
4200 20791.738 217.24966 0 3682.5393 1.6610313
4250 17934.932 693.16127 0 3682.3166 21.873883
4300 19100.574 498.18729 0 3681.6163 21.532237
4350 19413.018 446.7793 0 3682.2823 -4.2704314
4400 17789.211 718.33426 0 3683.2027 1.0379415
4450 20026.629 345.43781 0 3683.2093 4.4263168
4500 21214.613 147.74957 0 3683.5185 -10.125688
4550 17453.453 775.3037 0 3684.2125 19.510346
4600 21160.696 156.77399 0 3683.5566 -10.636755
4650 21050.559 175.09442 0 3683.5209 -19.428387
4700 21061.479 173.26537 0 3683.5119 -20.275579
4750 17355.204 790.87199 0 3683.4059 20.610078
4800 19915.606 364.53225 0 3683.7999 3.6606859
4850 19075.265 504.50956 0 3683.7203 8.2624176
4900 20398.346 284.20642 0 3683.9308 -17.640173
4950 21455.333 107.74714 0 3683.636 -1.4815448
5000 21803.806 49.676765 0 3683.6444 -1.9327346
5050 21270.151 138.50256 0 3683.5277 3.6741411
5100 21344.115 126.08528 0 3683.4379 3.8214176
5150 19851.636 374.97428 0 3683.5803 8.4959073
5200 21269.861 138.55429 0 3683.5311 -10.046801
5250 20122.191 329.4988 0 3683.1973 7.9973529
5300 20629.403 245.02266 0 3683.2566 11.224167
5350 17486.113 770.10951 0 3684.4617 19.232203
5400 20539.122 260.42053 0 3683.6075 5.724931
5450 21051.992 175.02291 0 3683.6882 -15.710252
5500 20572.816 254.78624 0 3683.5889 -16.748213
5550 21085.555 169.5693 0 3683.8284 -13.545513
5600 18645.009 576.79786 0 3684.2993 -7.359725
5650 17932.73 695.1821 0 3683.9704 18.841602
5700 19546.079 426.25178 0 3683.9315 -20.621489
5750 21575.582 88.089167 0 3684.0196 -5.2988961
5800 20032.517 345.33849 0 3684.0913 12.407223
5850 19069.621 505.21294 0 3683.483 10.367615
5900 20357.783 290.8963 0 3683.8602 11.460709
5950 18522.82 597.06926 0 3684.2059 1.862711
6000 19770.703 388.63596 0 3683.7531 -0.62125248
6050 20623.177 247.07831 0 3684.2744 9.4434999
6100 21371.961 122.34719 0 3684.3407 -4.5620096
6150 19718.833 397.95819 0 3684.4303 -4.6370712
6200 18974.167 522.06882 0 3684.43 -10.000411
6250 20513.505 265.51966 0 3684.4372 2.1426034
6300 18878.388 538.07714 0 3684.4752 -3.1510397
6350 19906.24 365.06588 0 3682.7725 17.634509
6400 19234.003 479.1683 0 3684.8354 -6.8421851
6450 19480.068 438.53752 0 3685.2155 -16.330551
6500 21488.068 103.90497 0 3685.2496 -1.1499613
6550 19704.115 401.37601 0 3685.3952 4.8407704
6600 16160.554 992.86664 0 3686.2924 39.944615
6650 18144.619 661.35803 0 3685.4612 -6.9898339
6700 20301.647 301.90959 0 3685.5174 -7.6049367
6750 18885.038 538.448 0 3685.9543 -3.076798
6800 19503.855 435.38872 0 3686.0313 -2.2485025
6850 19385.64 454.91989 0 3685.86 -0.0759232
6900 20856.736 209.45465 0 3685.5774 -8.1212742
6950 21716.629 66.118907 0 3685.5571 -9.1550128
7000 18468.583 608.57701 0 3686.6741 3.8034064
7050 17634.381 747.04592 0 3686.1094 -9.5418161
7100 17671.756 741.96232 0 3687.255 22.917025
7150 18939.806 529.7642 0 3686.3986 -1.7348736
7200 20103.862 334.46887 0 3685.1125 0.34212898
7250 20172.71 324.53739 0 3686.6557 0.28140655
7300 21392.036 120.70631 0 3686.0457 -15.765626
7350 16726.998 898.9567 0 3686.7896 0.43542251
7400 21373.039 124.30972 0 3686.4829 1.8080855
7450 18367.86 625.13687 0 3686.4468 15.850153
7500 21174.781 157.23552 0 3686.3656 -5.2377101
7550 21208.96 151.16226 0 3685.989 -3.5986807
7600 17765.788 724.95333 0 3685.918 3.3435356
7650 21479.236 106.00709 0 3685.8797 5.732363
7700 20405.328 285.33441 0 3686.2224 5.828716
7750 17449.335 778.04936 0 3686.2718 23.475442
7800 18030.088 680.18419 0 3685.1989 -4.4005429
7850 18570.223 591.01494 0 3686.0522 6.655923
7900 19743.667 395.73146 0 3686.3427 1.0995739
7950 17309.575 802.50065 0 3687.4298 -46.431929
8000 19672.052 405.90454 0 3684.5799 -5.457018
8050 19110.55 501.79127 0 3686.8829 5.6863626
8100 21119.314 165.69583 0 3685.5814 6.3942847
8150 20528.471 264.51363 0 3685.9254 1.8258403
8200 19553.161 427.00121 0 3685.8614 -2.1148285
8250 18892.698 537.91423 0 3686.6972 4.3847822
8300 21559.093 92.988331 0 3686.1706 -2.1441266
8350 20011.866 350.65095 0 3685.9619 1.2954833
8400 20784.827 222.10359 0 3686.2415 6.2853985
8450 21868.691 41.95956 0 3686.7413 -21.73077
8500 20400.247 288.08029 0 3688.1214 3.1558853
8550 21230.347 149.36743 0 3687.7586 -3.6975876
8600 20770.116 225.65263 0 3687.3387 3.7091985
8650 20453.778 280.33113 0 3689.2941 -7.6434625
8700 18802.607 553.564 0 3687.3318 20.945278
8750 21421.573 119.26157 0 3689.5238 -0.27999108
8800 17467.218 778.1177 0 3689.3207 6.9874055
8850 20064.486 345.29943 0 3689.3804 4.8733067
8900 20361.162 295.58384 0 3689.1108 -3.6494355
8950 19182.708 492.1496 0 3689.2676 -18.578745
9000 19614.169 420.49878 0 3689.5269 2.0109712
9050 20297.654 306.61685 0 3689.5592 -7.5845308
9100 17728.861 734.75303 0 3689.5631 6.992158
9150 19368.182 461.99664 0 3690.027 -1.3316402
9200 20124.551 335.66705 0 3689.7588 9.5476072
9250 20651.629 247.34676 0 3689.2849 1.8792858
9300 21089.973 174.47538 0 3689.4709 2.2075541
9350 21398.505 122.65289 0 3689.0704 1.065375
9400 19641.531 415.86361 0 3689.4521 8.7608941
9450 20178.988 326.61553 0 3689.7802 6.5896652
9500 21322.2 136.29143 0 3689.9915 -0.72654013
9550 20837.756 217.39769 0 3690.357 7.6997212
9600 20075.558 344.63892 0 3690.5652 10.473357
9650 21416.489 121.1964 0 3690.6112 -3.8331485
9700 21529.069 102.81269 0 3690.9908 -2.7482273
9750 21069.024 179.64368 0 3691.1476 -0.2994866
9800 20960.595 197.81453 0 3691.247 -7.1909854
9850 18883.265 543.68016 0 3690.891 -5.8186477
9900 20366.727 296.67851 0 3691.1331 -5.1227088
9950 21816.937 54.938291 0 3691.0944 -6.4660984
10000 21202.37 156.85546 0 3690.5838 -8.323298
Loop time of 7.28948 on 4 procs for 10000 steps with 81 atoms
Pair time (%) = 0.073433 (1.00738)
Neigh time (%) = 0.0341487 (0.468465)
Comm time (%) = 0.424286 (5.82053)
Outpt time (%) = 0.0348005 (0.477407)
Other time (%) = 6.72281 (92.2262)
Nlocal: 20.25 ave 81 max 0 min
Histogram: 3 0 0 0 0 0 0 0 0 1
Nghost: 33.25 ave 82 max 0 min
Histogram: 2 0 0 0 0 0 1 0 0 1
Neighs: 219.5 ave 878 max 0 min
Histogram: 3 0 0 0 0 0 0 0 0 1
Total # of neighbors = 878
Ave neighs/atom = 10.8395
Neighbor list builds = 993
Dangerous builds = 949
c4science · Help