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log.rigid.tnr.1Feb14.linux.1
bf8dc7e0698defficient_neuronet

log.rigid.tnr.1Feb14.linux.1
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			LAMMPS (1 Feb 2014)
			# Tethered nanorods

			atom_style molecular

			read_data data.rigid.tnr
			orthogonal box = (-31.122 -31.122 -31.122) to (31.122 31.122 31.122)
			1 by 1 by 1 MPI processor grid
			reading atoms ...
			5600 atoms
			scanning bonds ...
			1 = max bonds/atom
			reading bonds ...
			1600 bonds
			2 = max # of 1-2 neighbors
			1 = max # of 1-3 neighbors
			1 = max # of 1-4 neighbors
			2 = max # of special neighbors

			# Specify bond parameters

			bond_style fene
			bond_coeff 1 30.0 1.5 1.0 1.0

			special_bonds fene
			2 = max # of 1-2 neighbors
			2 = max # of special neighbors

			# Specify initial velocities

			velocity all create 1.4 109345

			# Specify rigid components

			group rods type 2
			4000 atoms in group rods
			group tethers subtract all rods
			1600 atoms in group tethers

			neigh_modify exclude molecule rods delay 0 every 1

			# Specify the pair potentials

			pair_style lj/cut 2.5
			pair_modify shift yes
			pair_coeff * * 1.0 1.0 1.122
			pair_coeff 2 2 1.0 1.0 2.5

			# Specify output

			thermo 100
			thermo_style custom step temp pe etotal press enthalpy lx ly lz pxx pyy pzz
			thermo_modify flush yes lost warn

			timestep 0.005

			fix 1 rods rigid molecule
			800 rigid bodies with 4000 atoms
			fix 2 tethers nve
			fix 3 all langevin 1.4 1.4 1.0 437624

			run 5000
			Memory usage per processor = 6.39499 Mbytes
			Step Temp PotEng TotEng Press Enthalpy Lx Ly Lz Pxx Pyy Pzz
			0 1.3963219 5.9478449 7.0445809 0.048565317 9.13595 62.244 62.244 62.244 0.0091983659 0.11850113 0.017996458
			100 1.3418512 5.9671777 7.0211299 0.025020362 8.0985822 62.244 62.244 62.244 0.02036076 0.038265078 0.016435248
			200 1.3730638 5.9750802 7.0535483 0.0053287535 7.2830205 62.244 62.244 62.244 -0.00054924195 0.0092396988 0.0072958036
			300 1.376262 5.9821642 7.0631443 0.0055536521 7.3023013 62.244 62.244 62.244 0.0033577704 0.0069111861 0.0063919998
			400 1.3782954 5.9983628 7.08094 0.0020507385 7.169251 62.244 62.244 62.244 -0.0060862717 0.0098998072 0.0023386801
			500 1.386863 6.0053312 7.0946377 -0.0009847031 7.0522334 62.244 62.244 62.244 -0.0038708372 0.0005697804 0.00034694745
			600 1.4069849 6.0035719 7.1086832 0.0047883912 7.3148858 62.244 62.244 62.244 0.001069365 0.0078059505 0.0054898581
			700 1.4423187 5.9982171 7.1310812 0.012141001 7.6539093 62.244 62.244 62.244 0.0094765272 0.011007593 0.015938883
			800 1.4303878 5.9968168 7.1203098 -0.00081349095 7.0852784 62.244 62.244 62.244 0.0011153812 0.00041597298 -0.0039718271
			900 1.4140538 5.9838168 7.0944803 0.00207609 7.183883 62.244 62.244 62.244 0.00043409671 0.0022778944 0.0035162788
			1000 1.3906567 5.988119 7.0804053 0.0022005856 7.1751692 62.244 62.244 62.244 0.0077268425 -0.0022042977 0.0010792119
			1100 1.3921992 5.9892203 7.0827181 0.0035041977 7.2336194 62.244 62.244 62.244 -0.0037576823 0.0040827951 0.01018748
			1200 1.3968803 5.9795846 7.0767592 -0.0031072146 6.9429532 62.244 62.244 62.244 -0.0077387449 0.0033056124 -0.0048885115
			1300 1.3755848 5.9739757 7.0544239 0.0092247106 7.4516677 62.244 62.244 62.244 0.0092788748 0.010737194 0.0076580625
			1400 1.3847985 5.9703631 7.0580481 0.0071703598 7.3668254 62.244 62.244 62.244 0.0080485848 0.012260474 0.001202021
			1500 1.4190051 5.956946 7.0714985 0.0035992903 7.2264948 62.244 62.244 62.244 -0.0055125437 0.01038369 0.0059267242
			1600 1.3980036 5.9671666 7.0652236 0.0061819851 7.3314385 62.244 62.244 62.244 0.0062429141 0.0035120077 0.0087910334
			1700 1.4276062 5.9610381 7.0823462 0.007832375 7.4196319 62.244 62.244 62.244 0.0083316819 0.0058394293 0.009326014
			1800 1.4112769 5.9630595 7.0715419 0.0068032101 7.3645087 62.244 62.244 62.244 0.0065502252 0.0062317255 0.0076276797
			1900 1.4276973 5.9489341 7.0703139 0.008397746 7.4319462 62.244 62.244 62.244 0.0148941 0.0032963108 0.0070028268
			2000 1.4056158 5.9564624 7.0604983 0.0090470732 7.4500926 62.244 62.244 62.244 0.011871718 0.0086681344 0.0066013673
			2100 1.3924778 5.9483611 7.0420778 0.0088893819 7.4248814 62.244 62.244 62.244 0.010247454 0.0097830093 0.0066376825
			2200 1.3760401 5.9435877 7.0243935 -0.0042972782 6.8393397 62.244 62.244 62.244 -0.0050064436 -0.0046216999 -0.0032636911
			2300 1.4191937 5.9334036 7.0481042 0.0047000032 7.2505006 62.244 62.244 62.244 0.0057709636 0.0044949165 0.0038341296
			2400 1.4213285 5.9472214 7.0635988 0.010197674 7.5027414 62.244 62.244 62.244 0.0083738259 0.0090537939 0.013165402
			2500 1.4153808 5.9421661 7.0538718 0.00015906304 7.0607216 62.244 62.244 62.244 0.0023516208 -0.0019814985 0.00010706681
			2600 1.4014223 5.9431386 7.0438807 0.0070733748 7.3484816 62.244 62.244 62.244 0.005414387 0.010055843 0.0057498949
			2700 1.4138077 5.9369067 7.047377 0.0024268844 7.1518859 62.244 62.244 62.244 0.0052918441 0.0014960354 0.00049277387
			2800 1.432192 5.9347676 7.0596777 0.0077670451 7.3941501 62.244 62.244 62.244 0.012668421 0.0059113035 0.0047214114
			2900 1.3938659 5.921023 7.01583 0.00537512 7.2472989 62.244 62.244 62.244 0.0020490377 0.007656609 0.0064197131
			3000 1.390221 5.9205014 7.0124455 -0.0010750979 6.9661485 62.244 62.244 62.244 0.0019519824 -0.0041878903 -0.00098938592
			3100 1.4205722 5.9178284 7.0336117 0.009873547 7.4587965 62.244 62.244 62.244 0.0040973363 0.012167266 0.013356039
			3200 1.398418 5.9150349 7.0134173 0.0061541829 7.278435 62.244 62.244 62.244 0.0067621803 0.011952562 -0.0002521939
			3300 1.4269859 5.9148726 7.0356937 0.0060623983 7.2967588 62.244 62.244 62.244 0.012956243 -2.4795615e-05 0.0052557479
			3400 1.434286 5.9356705 7.0622253 0.00027314048 7.0739876 62.244 62.244 62.244 -0.00054962139 0.0052526062 -0.0038835634
			3500 1.4416809 5.9228152 7.0551783 0.0083382965 7.4142505 62.244 62.244 62.244 0.0073993829 0.0030328137 0.014582693
			3600 1.4136063 5.9039442 7.0142563 0.001971221 7.099143 62.244 62.244 62.244 -0.00032316217 0.003503006 0.0027338193
			3700 1.433382 5.9120101 7.0378549 0.0071287089 7.3448386 62.244 62.244 62.244 0.0064768154 0.0046765426 0.010232769
			3800 1.3659482 5.9032871 6.9761662 -0.0054032435 6.7434863 62.244 62.244 62.244 -0.0073942825 -0.0082831048 -0.00053234334
			3900 1.3963224 5.9042995 7.0010359 0.0053310327 7.2306062 62.244 62.244 62.244 0.0081855547 0.0048807072 0.0029268363
			4000 1.4125479 5.9060668 7.0155474 0.0028451204 7.1380669 62.244 62.244 62.244 0.0052588116 0.00072372172 0.0025528279
			4100 1.3943956 5.9040893 6.9993123 0.0058043569 7.2492654 62.244 62.244 62.244 0.0060576276 0.002478686 0.0088767572
			4200 1.4249783 5.8906355 7.0098796 0.0030213234 7.1399869 62.244 62.244 62.244 0.0061743252 -0.0020791501 0.0049687951
			4300 1.3899826 5.8966344 6.9883912 0.0057294842 7.2351201 62.244 62.244 62.244 0.0049055668 0.0021899931 0.010092893
			4400 1.4414357 5.8986162 7.0307867 0.0050933157 7.2501203 62.244 62.244 62.244 0.0057939021 0.0037947176 0.0056913275
			4500 1.4092608 5.892298 6.9991969 0.0012247406 7.0519379 62.244 62.244 62.244 0.0042876402 0.0014588188 -0.0020722372
			4600 1.3779488 5.8928773 6.9751823 0.0020733584 7.0644674 62.244 62.244 62.244 0.0029285418 -0.0031642229 0.0064557564
			4700 1.4084742 5.909909 7.0161901 -0.00053850548 6.9930004 62.244 62.244 62.244 -0.0018600331 -0.0018359559 0.0020804726
			4800 1.4391588 5.9150069 7.0453891 0.015310705 7.7047142 62.244 62.244 62.244 0.014756643 0.018034492 0.013140978
			4900 1.4496016 5.907877 7.0464614 0.0075305556 7.3707499 62.244 62.244 62.244 0.0091920128 0.0081340187 0.0052656353
			5000 1.4293045 5.9102892 7.0329313 -0.0015935867 6.9643067 62.244 62.244 62.244 -0.0049858888 0.001820566 -0.0016154373
			Loop time of 6.35156 on 1 procs for 5000 steps with 5600 atoms

			Pair time (%) = 0.478212 (7.52904)
			Bond time (%) = 0.222193 (3.49824)
			Neigh time (%) = 1.2401 (19.5243)
			Comm time (%) = 0.172963 (2.72315)
			Outpt time (%) = 0.00360727 (0.0567935)
			Other time (%) = 4.23449 (66.6685)

			Nlocal: 5600 ave 5600 max 5600 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Nghost: 1351 ave 1351 max 1351 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Neighs: 5255 ave 5255 max 5255 min
			Histogram: 1 0 0 0 0 0 0 0 0 0

			Total # of neighbors = 5255
			Ave neighs/atom = 0.938393
			Ave special neighs/atom = 0.571429
			Neighbor list builds = 766
			Dangerous builds = 0

			# Replace fix rigid and fix langevin with new ones

			unfix 1
			unfix 3

			fix 3 tethers langevin 1.4 1.4 1.0 198450

			# Test different integrators for rods

			fix 1 rods rigid/nve molecule
			800 rigid bodies with 4000 atoms
			print "rigid/nve"
			rigid/nve
			run 1000
			WARNING: Inconsistent image flags (../domain.cpp:645)
			Memory usage per processor = 6.39499 Mbytes
			Step Temp PotEng TotEng Press Enthalpy Lx Ly Lz Pxx Pyy Pzz
			5000 1.4293045 5.9102892 7.0329313 0.028061066 8.2413255 62.244 62.244 62.244 0.017765452 0.040562905 0.02585484
			5100 1.4400998 5.9022414 7.0333627 0.0061821009 7.2995826 62.244 62.244 62.244 0.009770998 0.0030836918 0.0056916129
			5200 1.4082657 5.9104139 7.0165312 0.0064210573 7.2930413 62.244 62.244 62.244 0.0080770492 0.0051169375 0.0060691852
			5300 1.45649 5.8801752 7.0241701 0.0069092534 7.3217034 62.244 62.244 62.244 0.0065768895 0.0056877656 0.0084631052
			5400 1.4233427 5.8824466 7.000406 0.0035507414 7.1533117 62.244 62.244 62.244 0.0033649256 -0.00080481231 0.0080921109
			5500 1.4203908 5.8713513 6.9869921 0.0082802387 7.3435642 62.244 62.244 62.244 0.0073789675 0.0076306312 0.0098311173
			5600 1.4100524 5.8744301 6.9819507 0.0025993542 7.0938867 62.244 62.244 62.244 -0.002226516 0.005551312 0.0044732667
			5700 1.4094008 5.8740942 6.981103 0.001858876 7.0611518 62.244 62.244 62.244 -0.00080782471 -0.00061623499 0.0070006878
			5800 1.4017129 5.8875092 6.9884795 0.0010380104 7.0331794 62.244 62.244 62.244 0.0043974934 -0.0033700586 0.0020865964
			5900 1.3979088 5.8861057 6.9840882 0.0019969425 7.0700826 62.244 62.244 62.244 -0.002580911 0.0061245675 0.0024471709
			6000 1.4274747 5.8829671 7.004172 0.00018898098 7.0123101 62.244 62.244 62.244 0.0019071211 -0.0011893793 -0.00015079887
			Loop time of 1.27908 on 1 procs for 1000 steps with 5600 atoms

			Pair time (%) = 0.137631 (10.7602)
			Bond time (%) = 0.0451553 (3.53029)
			Neigh time (%) = 0.276716 (21.634)
			Comm time (%) = 0.0356052 (2.78366)
			Outpt time (%) = 0.000710726 (0.0555654)
			Other time (%) = 0.783261 (61.2363)

			Nlocal: 5600 ave 5600 max 5600 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Nghost: 1380 ave 1380 max 1380 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Neighs: 5416 ave 5416 max 5416 min
			Histogram: 1 0 0 0 0 0 0 0 0 0

			Total # of neighbors = 5416
			Ave neighs/atom = 0.967143
			Ave special neighs/atom = 0.571429
			Neighbor list builds = 153
			Dangerous builds = 0
			unfix 1

			fix 1 rods rigid/nvt molecule temp 1.4 1.4 1.0
			800 rigid bodies with 4000 atoms
			print "rigid/nvt"
			rigid/nvt
			run 1000
			WARNING: Inconsistent image flags (../domain.cpp:645)
			Memory usage per processor = 6.39499 Mbytes
			Step Temp PotEng TotEng Press Enthalpy Lx Ly Lz Pxx Pyy Pzz
			6000 1.4274747 5.8829671 7.004172 -0.02124798 6.0891699 62.244 62.244 62.244 -0.0035029341 -0.035545622 -0.024695385
			6100 1.4047816 5.8827162 6.9860969 0.0039973389 7.1582344 62.244 62.244 62.244 0.0038546201 0.0038745986 0.0042627978
			6200 1.4013195 5.8723518 6.9730132 0.0055794243 7.21328 62.244 62.244 62.244 0.0052298684 0.006566317 0.0049420874
			6300 1.4164814 5.8699858 6.982556 0.0046834632 7.18424 62.244 62.244 62.244 0.0042595662 0.0075687542 0.0022220694
			6400 1.4008382 5.8754385 6.9757219 0.0057855428 7.2248648 62.244 62.244 62.244 0.011229504 0.0035917167 0.0025354077
			6500 1.3961747 5.8821344 6.9787548 0.0054798914 7.2147355 62.244 62.244 62.244 0.0079746581 0.0012807952 0.007184221
			6600 1.3989989 5.8839851 6.9828238 0.0078068029 7.3190083 62.244 62.244 62.244 0.0075737438 0.01001737 0.0058292953
			6700 1.3944424 5.8846079 6.9798678 0.0025837202 7.0911306 62.244 62.244 62.244 0.001801077 0.0043727527 0.0015773308
			6800 1.3886249 5.8876899 6.9783804 0.0083096819 7.3362204 62.244 62.244 62.244 0.0057252172 0.0080731664 0.011130662
			6900 1.4128008 5.8873288 6.9970082 -0.0017879625 6.9200131 62.244 62.244 62.244 0.0032920311 -0.0044843856 -0.004171533
			7000 1.4296767 5.8776376 7.0005721 0.0028980535 7.125371 62.244 62.244 62.244 0.0020944649 0.002732346 0.0038673497
			Loop time of 1.30653 on 1 procs for 1000 steps with 5600 atoms

			Pair time (%) = 0.140375 (10.7442)
			Bond time (%) = 0.0453455 (3.47069)
			Neigh time (%) = 0.278969 (21.3519)
			Comm time (%) = 0.0354125 (2.71043)
			Outpt time (%) = 0.000714064 (0.0546535)
			Other time (%) = 0.805712 (61.6681)

			Nlocal: 5600 ave 5600 max 5600 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Nghost: 1365 ave 1365 max 1365 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Neighs: 5888 ave 5888 max 5888 min
			Histogram: 1 0 0 0 0 0 0 0 0 0

			Total # of neighbors = 5888
			Ave neighs/atom = 1.05143
			Ave special neighs/atom = 0.571429
			Neighbor list builds = 151
			Dangerous builds = 0
			unfix 1

			compute myTemp all temp

			fix 1 rods rigid/npt molecule temp 1.4 1.4 1.0 iso 0.05 0.05 1.0 dilate all
			800 rigid bodies with 4000 atoms
			print "rigid/npt iso"
			rigid/npt iso
			fix_modify 1 temp myTemp

			run 1000
			WARNING: Inconsistent image flags (../domain.cpp:645)
			Memory usage per processor = 6.39499 Mbytes
			Step Temp PotEng TotEng Press Enthalpy Lx Ly Lz Pxx Pyy Pzz
			7000 1.4296767 5.8776376 7.0005721 0.012931516 7.5574422 62.244 62.244 62.244 -0.033811545 0.071351891 0.0012542007
			7100 1.4257807 5.8661379 6.9860122 0.0063203866 7.2286059 59.901999 59.901999 59.901999 0.0075682964 0.0028831604 0.0085097032
			7200 1.407746 5.857124 6.962833 0.0084753318 7.2534913 57.694979 57.694979 57.694979 0.010202527 0.0094388943 0.005784574
			7300 1.3925246 5.8467137 6.9404672 0.014254002 7.3803203 55.699712 55.699712 55.699712 0.010958166 0.015538449 0.01626539
			7400 1.3876126 5.8261824 6.9160778 0.011565854 7.238709 53.8566 53.8566 53.8566 0.010074234 0.013288968 0.011334359
			7500 1.4080244 5.8243986 6.9303263 0.013237792 7.2665719 52.200705 52.200705 52.200705 0.014684708 0.015549417 0.0094792517
			7600 1.4024992 5.8202266 6.9218146 0.0087754412 7.1257639 50.677331 50.677331 50.677331 0.012762778 0.0046632388 0.0089003068
			7700 1.4053227 5.79557 6.8993757 0.017894387 7.2814436 49.264862 49.264862 49.264862 0.017455799 0.011081333 0.02514603
			7800 1.3626299 5.7913047 6.8615775 -0.0027715764 6.8070755 47.931898 47.931898 47.931898 -0.00096112659 -0.00022698058 -0.0071266219
			7900 1.3811061 5.7611338 6.8459187 0.022417792 7.2542129 46.722152 46.722152 46.722152 0.017429453 0.023217068 0.026606854
			8000 1.3909989 5.7527072 6.8452623 0.0050901754 6.9314891 45.607102 45.607102 45.607102 0.0033084213 0.0050773514 0.0068847534
			Loop time of 2.1421 on 1 procs for 1000 steps with 5600 atoms

			Pair time (%) = 0.243607 (11.3723)
			Bond time (%) = 0.067399 (3.1464)
			Neigh time (%) = 0.578037 (26.9846)
			Comm time (%) = 0.0550971 (2.5721)
			Outpt time (%) = 0.000721693 (0.0336909)
			Other time (%) = 1.19724 (55.8909)

			Nlocal: 5600 ave 5600 max 5600 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Nghost: 1964 ave 1964 max 1964 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Neighs: 11395 ave 11395 max 11395 min
			Histogram: 1 0 0 0 0 0 0 0 0 0

			Total # of neighbors = 11395
			Ave neighs/atom = 2.03482
			Ave special neighs/atom = 0.571429
			Neighbor list builds = 263
			Dangerous builds = 0
			unfix 1

			fix 1 rods rigid/npt molecule temp 1.4 1.4 1.0 x 0.05 0.05 1.0 dilate all
			800 rigid bodies with 4000 atoms
			print "rigid/npt x"
			rigid/npt x
			run 1000
			WARNING: Inconsistent image flags (../domain.cpp:645)
			Memory usage per processor = 6.39499 Mbytes
			Step Temp PotEng TotEng Press Enthalpy Lx Ly Lz Pxx Pyy Pzz
			8000 1.3909989 5.7527072 6.8452623 -0.013693646 6.6132941 45.607102 45.607102 45.607102 -0.043122633 -0.045235911 0.047277607
			8100 1.3859992 5.7541236 6.8427517 0.025001526 7.2534745 44.228819 45.607102 45.607102 0.034466544 0.018726978 0.021811058
			8200 1.3854121 5.741923 6.83009 0.00064570832 6.8403853 42.926629 45.607102 45.607102 0.0027453757 0.0012726672 -0.002080918
			8300 1.4154816 5.7503811 6.8621661 0.0142623 7.0833894 41.760381 45.607102 45.607102 0.011045171 0.01999352 0.011748208
			8400 1.3809342 5.7526615 6.8373114 0.010034961 6.9882285 40.489828 45.607102 45.607102 0.013514677 0.009127176 0.0074630301
			8500 1.377763 5.7274882 6.8096473 0.010601881 6.9645838 39.345393 45.607102 45.607102 0.011511215 0.00061614599 0.019678283
			8600 1.431011 5.716086 6.8400685 0.0082177641 6.9567982 38.242914 45.607102 45.607102 0.017556217 0.0072745279 -0.00017745274
			8700 1.4088268 5.7023605 6.8089185 0.014325516 7.006943 37.216169 45.607102 45.607102 0.030284184 0.0090717286 0.0036206352
			8800 1.4053586 5.7019319 6.8057658 0.004331614 6.8641135 36.265817 45.607102 45.607102 0.0075148755 0.012823387 -0.0073434199
			8900 1.4159123 5.7005178 6.812641 0.013485111 6.9893826 35.286383 45.607102 45.607102 0.025461313 0.0051541371 0.0098398833
			9000 1.4232531 5.6865082 6.8043973 0.014588857 6.9910378 34.44354 45.607102 45.607102 0.016849826 0.025113792 0.0018029545
			Loop time of 2.23572 on 1 procs for 1000 steps with 5600 atoms

			Pair time (%) = 0.329728 (14.7482)
			Bond time (%) = 0.0679741 (3.04037)
			Neigh time (%) = 0.547063 (24.4692)
			Comm time (%) = 0.0531805 (2.37867)
			Outpt time (%) = 0.000710964 (0.0318003)
			Other time (%) = 1.23706 (55.3317)

			Nlocal: 5600 ave 5600 max 5600 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Nghost: 2374 ave 2374 max 2374 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Neighs: 14730 ave 14730 max 14730 min
			Histogram: 1 0 0 0 0 0 0 0 0 0

			Total # of neighbors = 14730
			Ave neighs/atom = 2.63036
			Ave special neighs/atom = 0.571429
			Neighbor list builds = 190
			Dangerous builds = 0
			unfix 1

			fix 1 rods rigid/nph molecule iso 0.05 0.05 1.0 dilate all
			800 rigid bodies with 4000 atoms
			print "rigid/nph iso"
			rigid/nph iso
			run 1000
			WARNING: Inconsistent image flags (../domain.cpp:645)
			Memory usage per processor = 6.39499 Mbytes
			Step Temp PotEng TotEng Press Enthalpy Lx Ly Lz Pxx Pyy Pzz
			9000 1.4232531 5.6865082 6.8043973 -0.045897712 6.2172112 34.44354 45.607102 45.607102 -0.13827955 -0.060145768 0.060732183
			9100 1.4046189 5.689947 6.7931999 0.025063166 7.0966586 33.816926 44.777394 44.777394 0.026506621 0.026941055 0.021741822
			9200 1.4514944 5.6439353 6.7840064 0.010043669 6.8992028 33.212004 43.97641 43.97641 0.013456849 0.016567864 0.00010629292
			9300 1.4577939 5.655083 6.800102 0.010672001 6.9162857 32.639692 43.218605 43.218605 0.026259683 -0.0039439335 0.0097002517
			9400 1.4990612 5.6382783 6.8157106 0.0044191075 6.8615643 32.121265 42.53215 42.53215 -0.0025936629 0.022212724 -0.0063617388
			9500 1.4578238 5.6474926 6.7925351 0.011187763 6.9033093 31.623599 41.873184 41.873184 0.026402116 0.012016515 -0.0048553414
			9600 1.4618782 5.6455953 6.7938223 0.040647445 7.17882 31.159311 41.258416 41.258416 0.030007882 0.037188739 0.054745715
			9700 1.472894 5.6140659 6.7709452 0.031213864 7.0543129 30.721834 40.679146 40.679146 0.030150709 0.023805303 0.03968558
			9800 1.4853035 5.5879969 6.7546233 0.019089748 6.920651 30.285846 40.101849 40.101849 -0.001882924 0.030361407 0.02879076
			9900 1.4922807 5.5739043 6.7460109 0.034454036 7.033471 29.869325 39.55033 39.55033 0.037756787 0.037488603 0.028116717
			10000 1.4702912 5.5609742 6.7158092 0.02974948 6.9548436 29.496685 39.056912 39.056912 0.048495581 0.026126614 0.014626246
			Loop time of 2.46339 on 1 procs for 1000 steps with 5600 atoms

			Pair time (%) = 0.418965 (17.0077)
			Bond time (%) = 0.0689692 (2.79977)
			Neigh time (%) = 0.69069 (28.0382)
			Comm time (%) = 0.0612285 (2.48554)
			Outpt time (%) = 0.00073576 (0.0298677)
			Other time (%) = 1.2228 (49.639)

			Nlocal: 5600 ave 5600 max 5600 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Nghost: 2884 ave 2884 max 2884 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Neighs: 21437 ave 21437 max 21437 min
			Histogram: 1 0 0 0 0 0 0 0 0 0

			Total # of neighbors = 21437
			Ave neighs/atom = 3.82804
			Ave special neighs/atom = 0.571429
			Neighbor list builds = 190
			Dangerous builds = 0
			unfix 1

			fix 1 rods rigid/nph molecule x 0.05 0.05 1.0 y 0.05 0.05 1.0 couple xy dilate all
			800 rigid bodies with 4000 atoms
			print "rigid/nph xy couple"
			rigid/nph xy couple
			run 1000
			WARNING: Inconsistent image flags (../domain.cpp:645)
			Memory usage per processor = 6.39881 Mbytes
			Step Temp PotEng TotEng Press Enthalpy Lx Ly Lz Pxx Pyy Pzz
			10000 1.4702912 5.5609742 6.7158092 0.072285735 7.2966186 29.496685 39.056912 39.056912 0.0517015 0.12420995 0.040945755
			10100 1.4573097 5.5587677 6.7034064 0.044500854 7.0509833 29.081982 38.507799 39.056912 0.044350384 0.023335488 0.06581669
			10200 1.4979402 5.529745 6.7062968 0.020491404 6.8628393 28.761597 38.083573 39.056912 0.027897265 0.011514546 0.0220624
			10300 1.5172843 5.5187731 6.7105187 0.02641776 6.9082543 28.469328 37.696576 39.056912 0.036912371 0.030960772 0.011380138
			10400 1.4760818 5.5254938 6.684877 0.0091876447 6.7521031 28.14814 37.271288 39.056912 0.015300105 0.02827069 -0.016007861
			10500 1.5146302 5.5026001 6.692261 0.021789385 6.8479527 27.815895 36.831359 39.056912 0.015592969 0.032547229 0.017227956
			10600 1.4679788 5.4885912 6.64161 0.011753224 6.7237238 27.505044 36.419757 39.056912 0.010721153 0.010926592 0.013611926
			10700 1.4667245 5.4720863 6.6241198 0.0043905713 6.6539747 27.135001 35.929779 39.056912 -0.03606819 0.013643937 0.035595967
			10800 1.4647544 5.4559859 6.606472 0.036718423 6.8501768 26.80851 35.497468 39.056912 0.044497798 0.031324763 0.034332708
			10900 1.4580432 5.4564769 6.6016918 0.065478135 7.0263115 26.499317 35.088061 39.056912 0.08229008 0.052793688 0.061350637
			11000 1.4700915 5.4471801 6.6018582 -0.016382922 6.4976429 26.245381 34.751822 39.056912 -0.0093025128 -0.034580288 -0.005265964
			Loop time of 2.65811 on 1 procs for 1000 steps with 5600 atoms

			Pair time (%) = 0.524128 (19.7181)
			Bond time (%) = 0.068589 (2.58037)
			Neigh time (%) = 0.759783 (28.5836)
			Comm time (%) = 0.0634546 (2.38721)
			Outpt time (%) = 0.000737429 (0.0277426)
			Other time (%) = 1.24142 (46.7031)

			Nlocal: 5600 ave 5600 max 5600 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Nghost: 3289 ave 3289 max 3289 min
			Histogram: 1 0 0 0 0 0 0 0 0 0
			Neighs: 27077 ave 27077 max 27077 min
			Histogram: 1 0 0 0 0 0 0 0 0 0

			Total # of neighbors = 27077
			Ave neighs/atom = 4.83518
			Ave special neighs/atom = 0.571429
			Neighbor list builds = 170
			Dangerous builds = 0

lammps/examples/rigid/log.rigid.tnr.1Feb14.linux.1bf8dc7e0698defficient_neuronet

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lammps/examples/rigid/log.rigid.tnr.1Feb14.linux.1
bf8dc7e0698defficient_neuronet

log.rigid.tnr.1Feb14.linux.1
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