Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F96288592
main.cpp
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Tue, Dec 24, 14:53
Size
14 KB
Mime Type
text/x-c
Expires
Thu, Dec 26, 14:53 (2 d)
Engine
blob
Format
Raw Data
Handle
23090018
Attached To
rLAMMPS lammps
main.cpp
View Options
//@HEADER
// ************************************************************************
//
// Kokkos v. 2.0
// Copyright (2014) Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact H. Carter Edwards (hcedwar@sandia.gov)
//
// ************************************************************************
//@HEADER
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <strings.h>
#include <utility>
#include <string>
#include <vector>
#include <sstream>
#include <iostream>
#include <iomanip>
#include <Kokkos_Core.hpp>
#include <WrapMPI.hpp>
#include <fenl.hpp>
// For vtune
#include <sys/types.h>
#include <unistd.h>
//----------------------------------------------------------------------------
enum
{
CMD_USE_THREADS
=
0
,
CMD_USE_NUMA
,
CMD_USE_CORE_PER_NUMA
,
CMD_USE_CUDA
,
CMD_USE_OPENMP
,
CMD_USE_CUDA_DEV
,
CMD_USE_FIXTURE_X
,
CMD_USE_FIXTURE_Y
,
CMD_USE_FIXTURE_Z
,
CMD_USE_FIXTURE_BEGIN
,
CMD_USE_FIXTURE_END
,
CMD_USE_FIXTURE_QUADRATIC
,
CMD_USE_ATOMIC
,
CMD_USE_TRIALS
,
CMD_VTUNE
,
CMD_PRINT
,
CMD_ECHO
,
CMD_ERROR
,
CMD_COUNT
};
void
print_cmdline
(
std
::
ostream
&
s
,
const
int
cmd
[]
)
{
if
(
cmd
[
CMD_USE_THREADS
]
)
{
s
<<
" Threads("
<<
cmd
[
CMD_USE_THREADS
]
<<
") NUMA("
<<
cmd
[
CMD_USE_NUMA
]
<<
") CORE_PER_NUMA("
<<
cmd
[
CMD_USE_CORE_PER_NUMA
]
<<
")"
;
}
if
(
cmd
[
CMD_USE_OPENMP
]
)
{
s
<<
" OpenMP("
<<
cmd
[
CMD_USE_OPENMP
]
<<
") NUMA("
<<
cmd
[
CMD_USE_NUMA
]
<<
") CORE_PER_NUMA("
<<
cmd
[
CMD_USE_CORE_PER_NUMA
]
<<
")"
;
}
if
(
cmd
[
CMD_USE_FIXTURE_X
]
)
{
s
<<
" Fixture("
<<
cmd
[
CMD_USE_FIXTURE_X
]
<<
"x"
<<
cmd
[
CMD_USE_FIXTURE_Y
]
<<
"x"
<<
cmd
[
CMD_USE_FIXTURE_Z
]
<<
")"
;
}
if
(
cmd
[
CMD_USE_FIXTURE_BEGIN
]
)
{
s
<<
" Fixture( "
<<
cmd
[
CMD_USE_FIXTURE_BEGIN
]
<<
" .. "
<<
cmd
[
CMD_USE_FIXTURE_END
]
<<
" )"
;
}
if
(
cmd
[
CMD_USE_FIXTURE_QUADRATIC
]
)
{
s
<<
" Quadratic-Element"
;
}
if
(
cmd
[
CMD_USE_CUDA
]
)
{
s
<<
" CUDA("
<<
cmd
[
CMD_USE_CUDA_DEV
]
<<
")"
;
}
if
(
cmd
[
CMD_USE_ATOMIC
]
)
{
s
<<
" ATOMIC"
;
}
if
(
cmd
[
CMD_USE_TRIALS
]
)
{
s
<<
" TRIALS("
<<
cmd
[
CMD_USE_TRIALS
]
<<
")"
;
}
if
(
cmd
[
CMD_VTUNE
]
)
{
s
<<
" VTUNE"
;
}
if
(
cmd
[
CMD_PRINT
]
)
{
s
<<
" PRINT"
;
}
s
<<
std
::
endl
;
}
void
print_perf_value
(
std
::
ostream
&
s
,
const
std
::
vector
<
size_t
>
&
widths
,
const
Kokkos
::
Example
::
FENL
::
Perf
&
perf
)
{
int
i
=
0
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
perf
.
global_elem_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
perf
.
newton_iter_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
perf
.
cg_iter_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
perf
.
map_ratio
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
perf
.
fill_node_set
*
1000.0
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
perf
.
scan_node_count
*
1000.0
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
perf
.
fill_graph_entries
*
1000.0
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
perf
.
sort_graph_entries
*
1000.0
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
perf
.
fill_element_graph
*
1000.0
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
perf
.
create_sparse_matrix
*
1000.0
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
perf
.
fill_time
*
1000.0
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
perf
.
bc_time
*
1000.0
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
(
perf
.
matvec_time
*
1000.0
)
/
perf
.
cg_iter_count
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
++
])
<<
(
(
perf
.
cg_time
*
1000.0
)
/
perf
.
cg_iter_count
)
/
perf
.
global_node_count
<<
" ,"
;
s
<<
std
::
setw
(
widths
[
i
])
<<
perf
.
error_max
;
s
<<
std
::
endl
;
}
template
<
class
Device
,
Kokkos
::
Example
::
BoxElemPart
::
ElemOrder
ElemOrder
>
void
run
(
MPI_Comm
comm
,
const
int
cmd
[]
)
{
int
comm_rank
=
0
;
#if defined( KOKKOS_HAVE_MPI )
MPI_Comm_rank
(
comm
,
&
comm_rank
);
#else
comm
=
0
;
#endif
if
(
0
==
comm_rank
)
{
if
(
cmd
[
CMD_USE_THREADS
]
)
{
std
::
cout
<<
"THREADS , "
<<
cmd
[
CMD_USE_THREADS
]
;
}
else
if
(
cmd
[
CMD_USE_OPENMP
]
)
{
std
::
cout
<<
"OPENMP , "
<<
cmd
[
CMD_USE_OPENMP
]
;
}
else
if
(
cmd
[
CMD_USE_CUDA
]
)
{
std
::
cout
<<
"CUDA"
;
}
if
(
cmd
[
CMD_USE_FIXTURE_QUADRATIC
]
)
{
std
::
cout
<<
" , QUADRATIC-ELEMENT"
;
}
else
{
std
::
cout
<<
" , LINEAR-ELEMENT"
;
}
if
(
cmd
[
CMD_USE_ATOMIC
]
)
{
std
::
cout
<<
" , USING ATOMICS"
;
}
}
std
::
vector
<
std
::
pair
<
std
::
string
,
std
::
string
>
>
headers
;
headers
.
push_back
(
std
::
make_pair
(
"ELEMS"
,
"count"
));
headers
.
push_back
(
std
::
make_pair
(
"NODES"
,
"count"
));
headers
.
push_back
(
std
::
make_pair
(
"NEWTON"
,
"iter"
));
headers
.
push_back
(
std
::
make_pair
(
"CG"
,
"iter"
));
headers
.
push_back
(
std
::
make_pair
(
"MAP_RATIO"
,
"ratio"
));
headers
.
push_back
(
std
::
make_pair
(
"SET_FILL/NODE"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"SCAN/NODE"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"GRAPH_FILL/NODE"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"SORT/NODE"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"ELEM_GRAPH_FILL/NODE"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"MATRIX_CREATE/NODE"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"MATRIX_FILL/NODE"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"BOUNDARY/NODE"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"MAT_VEC/ITER/ROW"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"CG/ITER/ROW"
,
"millisec"
));
headers
.
push_back
(
std
::
make_pair
(
"ERROR"
,
"ratio"
));
// find print widths
size_t
min_width
=
10
;
std
::
vector
<
size_t
>
widths
(
headers
.
size
());
for
(
size_t
i
=
0
,
ie
=
headers
.
size
();
i
<
ie
;
++
i
)
widths
[
i
]
=
std
::
max
(
min_width
,
headers
[
i
].
first
.
size
()
+
1
);
// print column headers
if
(
0
==
comm_rank
)
{
std
::
cout
<<
std
::
endl
;
for
(
size_t
i
=
0
;
i
<
headers
.
size
();
++
i
)
std
::
cout
<<
std
::
setw
(
widths
[
i
])
<<
headers
[
i
].
first
<<
" ,"
;
std
::
cout
<<
"
\b\b
"
<<
std
::
endl
;
for
(
size_t
i
=
0
;
i
<
headers
.
size
();
++
i
)
std
::
cout
<<
std
::
setw
(
widths
[
i
])
<<
headers
[
i
].
second
<<
" ,"
;
std
::
cout
<<
"
\b\b
"
<<
std
::
endl
;
std
::
cout
<<
std
::
scientific
;
std
::
cout
.
precision
(
3
);
}
if
(
cmd
[
CMD_USE_FIXTURE_BEGIN
]
)
{
for
(
int
i
=
cmd
[
CMD_USE_FIXTURE_BEGIN
]
;
i
<
cmd
[
CMD_USE_FIXTURE_END
]
*
2
;
i
*=
2
)
{
int
nelem
[
3
]
;
nelem
[
0
]
=
std
::
max
(
1
,
(
int
)
cbrt
(
((
double
)
i
)
/
2.0
)
);
nelem
[
1
]
=
1
+
nelem
[
0
]
;
nelem
[
2
]
=
2
*
nelem
[
0
]
;
const
Kokkos
::
Example
::
FENL
::
Perf
perf
=
cmd
[
CMD_USE_FIXTURE_QUADRATIC
]
?
Kokkos
::
Example
::
FENL
::
fenl
<
Device
,
Kokkos
::
Example
::
BoxElemPart
::
ElemQuadratic
>
(
comm
,
cmd
[
CMD_PRINT
],
cmd
[
CMD_USE_TRIALS
],
cmd
[
CMD_USE_ATOMIC
],
nelem
)
:
Kokkos
::
Example
::
FENL
::
fenl
<
Device
,
Kokkos
::
Example
::
BoxElemPart
::
ElemLinear
>
(
comm
,
cmd
[
CMD_PRINT
],
cmd
[
CMD_USE_TRIALS
],
cmd
[
CMD_USE_ATOMIC
],
nelem
)
;
if
(
0
==
comm_rank
)
print_perf_value
(
std
::
cout
,
widths
,
perf
);
}
}
else
{
int
nelem
[
3
]
=
{
cmd
[
CMD_USE_FIXTURE_X
]
,
cmd
[
CMD_USE_FIXTURE_Y
]
,
cmd
[
CMD_USE_FIXTURE_Z
]
};
const
Kokkos
::
Example
::
FENL
::
Perf
perf
=
cmd
[
CMD_USE_FIXTURE_QUADRATIC
]
?
Kokkos
::
Example
::
FENL
::
fenl
<
Device
,
Kokkos
::
Example
::
BoxElemPart
::
ElemQuadratic
>
(
comm
,
cmd
[
CMD_PRINT
],
cmd
[
CMD_USE_TRIALS
],
cmd
[
CMD_USE_ATOMIC
],
nelem
)
:
Kokkos
::
Example
::
FENL
::
fenl
<
Device
,
Kokkos
::
Example
::
BoxElemPart
::
ElemLinear
>
(
comm
,
cmd
[
CMD_PRINT
],
cmd
[
CMD_USE_TRIALS
],
cmd
[
CMD_USE_ATOMIC
],
nelem
)
;
if
(
0
==
comm_rank
)
print_perf_value
(
std
::
cout
,
widths
,
perf
);
}
}
//----------------------------------------------------------------------------
int
main
(
int
argc
,
char
**
argv
)
{
int
comm_rank
=
0
;
#if defined( KOKKOS_HAVE_MPI )
MPI_Init
(
&
argc
,
&
argv
);
MPI_Comm
comm
=
MPI_COMM_WORLD
;
MPI_Comm_rank
(
comm
,
&
comm_rank
);
#else
MPI_Comm
comm
=
0
;
(
void
)
comm
;
// suppress warning
#endif
int
cmdline
[
CMD_COUNT
]
;
for
(
int
i
=
0
;
i
<
CMD_COUNT
;
++
i
)
cmdline
[
i
]
=
0
;
if
(
0
==
comm_rank
)
{
for
(
int
i
=
1
;
i
<
argc
;
++
i
)
{
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"threads"
)
)
{
cmdline
[
CMD_USE_THREADS
]
=
atoi
(
argv
[
++
i
]
);
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"openmp"
)
)
{
cmdline
[
CMD_USE_OPENMP
]
=
atoi
(
argv
[
++
i
]
);
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"cores"
)
)
{
sscanf
(
argv
[
++
i
]
,
"%dx%d"
,
cmdline
+
CMD_USE_NUMA
,
cmdline
+
CMD_USE_CORE_PER_NUMA
);
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"cuda"
)
)
{
cmdline
[
CMD_USE_CUDA
]
=
1
;
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"cuda-dev"
)
)
{
cmdline
[
CMD_USE_CUDA
]
=
1
;
cmdline
[
CMD_USE_CUDA_DEV
]
=
atoi
(
argv
[
++
i
]
)
;
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"fixture"
)
)
{
sscanf
(
argv
[
++
i
]
,
"%dx%dx%d"
,
cmdline
+
CMD_USE_FIXTURE_X
,
cmdline
+
CMD_USE_FIXTURE_Y
,
cmdline
+
CMD_USE_FIXTURE_Z
);
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"fixture-range"
)
)
{
sscanf
(
argv
[
++
i
]
,
"%d..%d"
,
cmdline
+
CMD_USE_FIXTURE_BEGIN
,
cmdline
+
CMD_USE_FIXTURE_END
);
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"fixture-quadratic"
)
)
{
cmdline
[
CMD_USE_FIXTURE_QUADRATIC
]
=
1
;
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"atomic"
)
)
{
cmdline
[
CMD_USE_ATOMIC
]
=
1
;
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"trials"
)
)
{
cmdline
[
CMD_USE_TRIALS
]
=
atoi
(
argv
[
++
i
]
)
;
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"vtune"
)
)
{
cmdline
[
CMD_VTUNE
]
=
1
;
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"print"
)
)
{
cmdline
[
CMD_PRINT
]
=
1
;
}
else
if
(
0
==
strcasecmp
(
argv
[
i
]
,
"echo"
)
)
{
cmdline
[
CMD_ECHO
]
=
1
;
}
else
{
cmdline
[
CMD_ERROR
]
=
1
;
std
::
cerr
<<
"Unrecognized command line argument #"
<<
i
<<
": "
<<
argv
[
i
]
<<
std
::
endl
;
}
}
if
(
cmdline
[
CMD_ECHO
]
&&
0
==
comm_rank
)
{
print_cmdline
(
std
::
cout
,
cmdline
);
}
}
#if defined( KOKKOS_HAVE_MPI )
MPI_Bcast
(
cmdline
,
CMD_COUNT
,
MPI_INT
,
0
,
comm
);
#endif
if
(
cmdline
[
CMD_VTUNE
]
)
{
std
::
stringstream
cmd
;
pid_t
my_os_pid
=
getpid
();
const
std
::
string
vtune_loc
=
"/usr/local/intel/vtune_amplifier_xe_2013/bin64/amplxe-cl"
;
const
std
::
string
output_dir
=
"./vtune/vtune."
;
const
int
p_rank
=
comm_rank
;
cmd
<<
vtune_loc
<<
" -collect hotspots -result-dir "
<<
output_dir
<<
p_rank
<<
" -target-pid "
<<
my_os_pid
<<
" &"
;
if
(
p_rank
==
0
)
std
::
cout
<<
cmd
.
str
()
<<
std
::
endl
;
system
(
cmd
.
str
().
c_str
());
system
(
"sleep 10"
);
}
if
(
!
cmdline
[
CMD_ERROR
]
&&
!
cmdline
[
CMD_ECHO
]
)
{
if
(
!
cmdline
[
CMD_USE_TRIALS
]
)
{
cmdline
[
CMD_USE_TRIALS
]
=
1
;
}
if
(
!
cmdline
[
CMD_USE_FIXTURE_X
]
&&
!
cmdline
[
CMD_USE_FIXTURE_BEGIN
]
)
{
cmdline
[
CMD_USE_FIXTURE_X
]
=
2
;
cmdline
[
CMD_USE_FIXTURE_Y
]
=
2
;
cmdline
[
CMD_USE_FIXTURE_Z
]
=
2
;
}
#if defined( KOKKOS_HAVE_PTHREAD )
if
(
cmdline
[
CMD_USE_THREADS
]
)
{
if
(
cmdline
[
CMD_USE_NUMA
]
&&
cmdline
[
CMD_USE_CORE_PER_NUMA
]
)
{
Kokkos
::
Threads
::
initialize
(
cmdline
[
CMD_USE_THREADS
]
,
cmdline
[
CMD_USE_NUMA
]
,
cmdline
[
CMD_USE_CORE_PER_NUMA
]
);
}
else
{
Kokkos
::
Threads
::
initialize
(
cmdline
[
CMD_USE_THREADS
]
);
}
run
<
Kokkos
::
Threads
,
Kokkos
::
Example
::
BoxElemPart
::
ElemLinear
>
(
comm
,
cmdline
);
Kokkos
::
Threads
::
finalize
();
}
#endif
#if defined( KOKKOS_HAVE_OPENMP )
if
(
cmdline
[
CMD_USE_OPENMP
]
)
{
if
(
cmdline
[
CMD_USE_NUMA
]
&&
cmdline
[
CMD_USE_CORE_PER_NUMA
]
)
{
Kokkos
::
OpenMP
::
initialize
(
cmdline
[
CMD_USE_OPENMP
]
,
cmdline
[
CMD_USE_NUMA
]
,
cmdline
[
CMD_USE_CORE_PER_NUMA
]
);
}
else
{
Kokkos
::
OpenMP
::
initialize
(
cmdline
[
CMD_USE_OPENMP
]
);
}
run
<
Kokkos
::
OpenMP
,
Kokkos
::
Example
::
BoxElemPart
::
ElemLinear
>
(
comm
,
cmdline
);
Kokkos
::
OpenMP
::
finalize
();
}
#endif
#if defined( KOKKOS_HAVE_CUDA )
if
(
cmdline
[
CMD_USE_CUDA
]
)
{
// Use the last device:
Kokkos
::
HostSpace
::
execution_space
::
initialize
();
Kokkos
::
Cuda
::
initialize
(
Kokkos
::
Cuda
::
SelectDevice
(
cmdline
[
CMD_USE_CUDA_DEV
]
)
);
run
<
Kokkos
::
Cuda
,
Kokkos
::
Example
::
BoxElemPart
::
ElemLinear
>
(
comm
,
cmdline
);
Kokkos
::
Cuda
::
finalize
();
Kokkos
::
HostSpace
::
execution_space
::
finalize
();
}
#endif
}
#if defined( KOKKOS_HAVE_MPI )
MPI_Finalize
();
#endif
return
cmdline
[
CMD_ERROR
]
?
-
1
:
0
;
}
Event Timeline
Log In to Comment