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<li class="navelem"><b>voro</b></li><li class="navelem"><a class="el" href="classvoro_1_1pre__container.html">pre_container</a></li> </ul>
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<p>A class for storing an arbitrary number of particles without radius information, prior to setting up a container geometry.
<a href="classvoro_1_1pre__container.html#details">More...</a></p>
<p><code>#include &lt;<a class="el" href="pre__container_8hh_source.html">pre_container.hh</a>&gt;</code></p>
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for voro::pre_container:</div>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a6b1faf934a8f416c595b6f0be5832bbe"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container.html#a6b1faf934a8f416c595b6f0be5832bbe">pre_container</a> (double ax_, double bx_, double ay_, double by_, double az_, double bz_, bool xperiodic_, bool yperiodic_, bool zperiodic_)</td></tr>
<tr class="memitem:ac68ce0449cf83ee282325d5302ffa4cd"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container.html#ac68ce0449cf83ee282325d5302ffa4cd">put</a> (int n, double x, double y, double z)</td></tr>
<tr class="memitem:a0d62168ad0379672e038ec07cc362567"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container.html#a0d62168ad0379672e038ec07cc362567">import</a> (FILE *fp=stdin)</td></tr>
<tr class="memitem:a84488a4453d94d6fef9afe2578c35adf"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container.html#a84488a4453d94d6fef9afe2578c35adf">import</a> (const char *filename)</td></tr>
<tr class="memitem:a7a2e73ad34fbfe1001f59ea3b69f992f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container.html#a7a2e73ad34fbfe1001f59ea3b69f992f">setup</a> (<a class="el" href="classvoro_1_1container.html">container</a> &amp;con)</td></tr>
<tr class="memitem:a81aae000e3b787c58deef7a8f197bdc3"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container.html#a81aae000e3b787c58deef7a8f197bdc3">setup</a> (<a class="el" href="classvoro_1_1particle__order.html">particle_order</a> &amp;vo, <a class="el" href="classvoro_1_1container.html">container</a> &amp;con)</td></tr>
<tr class="inherit_header pub_methods_classvoro_1_1pre__container__base"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classvoro_1_1pre__container__base')"><img src="closed.png" alt="-"/>&nbsp;Public Member Functions inherited from <a class="el" href="classvoro_1_1pre__container__base.html">voro::pre_container_base</a></td></tr>
<tr class="memitem:a8e1fcadbeedc63f205a36c2fa9333ab6 inherit pub_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a8e1fcadbeedc63f205a36c2fa9333ab6">guess_optimal</a> (int &amp;nx, int &amp;ny, int &amp;nz)</td></tr>
<tr class="memitem:a522bd57b4a0e4af6b197c04d103adc68 inherit pub_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a522bd57b4a0e4af6b197c04d103adc68">pre_container_base</a> (double ax_, double bx_, double ay_, double by_, double az_, double bz_, bool xperiodic_, bool yperiodic_, bool zperiodic_, int ps_)</td></tr>
<tr class="memitem:a9832a92c7e6dbc2959ab958ea821ca9a inherit pub_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a9832a92c7e6dbc2959ab958ea821ca9a">~pre_container_base</a> ()</td></tr>
<tr class="memitem:a253ea1bdfa1b82c3fb0ab12f1685d695 inherit pub_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a253ea1bdfa1b82c3fb0ab12f1685d695">total_particles</a> ()</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_attribs_classvoro_1_1pre__container__base"><td colspan="2" onclick="javascript:toggleInherit('pub_attribs_classvoro_1_1pre__container__base')"><img src="closed.png" alt="-"/>&nbsp;Data Fields inherited from <a class="el" href="classvoro_1_1pre__container__base.html">voro::pre_container_base</a></td></tr>
<tr class="memitem:a7ffde3944d0899b6ae9abe42e6567789 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a7ffde3944d0899b6ae9abe42e6567789">ax</a></td></tr>
<tr class="memitem:a34dfa63f38cf870b32004e12558463a0 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a34dfa63f38cf870b32004e12558463a0">bx</a></td></tr>
<tr class="memitem:a397c0ae141594e1868eb6248a6d57d52 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a397c0ae141594e1868eb6248a6d57d52">ay</a></td></tr>
<tr class="memitem:a6acac844ab71a02ea6a990fccdbd5c59 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a6acac844ab71a02ea6a990fccdbd5c59">by</a></td></tr>
<tr class="memitem:a68952c93198e0623604a049aa4140d52 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a68952c93198e0623604a049aa4140d52">az</a></td></tr>
<tr class="memitem:a9049eaba232b13aa3a9562dffa57bc24 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a9049eaba232b13aa3a9562dffa57bc24">bz</a></td></tr>
<tr class="memitem:aa7cffdaee881f941e421d0e9e3f38db3 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#aa7cffdaee881f941e421d0e9e3f38db3">xperiodic</a></td></tr>
<tr class="memitem:aa86a0e8ac0bafbc2bf2fefbafce005be inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#aa86a0e8ac0bafbc2bf2fefbafce005be">yperiodic</a></td></tr>
<tr class="memitem:a5df09b1ba1e3fe49c3efba11ed44efb2 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a5df09b1ba1e3fe49c3efba11ed44efb2">zperiodic</a></td></tr>
<tr class="inherit_header pro_methods_classvoro_1_1pre__container__base"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classvoro_1_1pre__container__base')"><img src="closed.png" alt="-"/>&nbsp;Protected Member Functions inherited from <a class="el" href="classvoro_1_1pre__container__base.html">voro::pre_container_base</a></td></tr>
<tr class="memitem:a3b9e5b59a4fd8477321d9412feffac4f inherit pro_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a3b9e5b59a4fd8477321d9412feffac4f">new_chunk</a> ()</td></tr>
<tr class="memitem:abc281e0f5b042046451b1d86ee94880d inherit pro_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#abc281e0f5b042046451b1d86ee94880d">extend_chunk_index</a> ()</td></tr>
<tr class="inherit_header pro_attribs_classvoro_1_1pre__container__base"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classvoro_1_1pre__container__base')"><img src="closed.png" alt="-"/>&nbsp;Protected Attributes inherited from <a class="el" href="classvoro_1_1pre__container__base.html">voro::pre_container_base</a></td></tr>
<tr class="memitem:a4a3ff1d6bee289e53f5015327384444a inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a4a3ff1d6bee289e53f5015327384444a">ps</a></td></tr>
<tr class="memitem:a9ae49ab1c51dc851e7ddf3035b719a6b inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a9ae49ab1c51dc851e7ddf3035b719a6b">index_sz</a></td></tr>
<tr class="memitem:a927440d3390000b94cce98733d81811c inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a927440d3390000b94cce98733d81811c">pre_id</a></td></tr>
<tr class="memitem:a687bc9acac994d7918e1e34c27df68e3 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a687bc9acac994d7918e1e34c27df68e3">end_id</a></td></tr>
<tr class="memitem:a49cb1c584f78ac8fdce353fd2f43b5f6 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a49cb1c584f78ac8fdce353fd2f43b5f6">l_id</a></td></tr>
<tr class="memitem:a432897c62a5d0c1acc39a97ffe27b506 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a432897c62a5d0c1acc39a97ffe27b506">ch_id</a></td></tr>
<tr class="memitem:a73bcad154008325e074bea734fc4125b inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a73bcad154008325e074bea734fc4125b">e_id</a></td></tr>
<tr class="memitem:a8f3fadf0d9d115fec92eedbcb2c5af9c inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">double **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a8f3fadf0d9d115fec92eedbcb2c5af9c">pre_p</a></td></tr>
<tr class="memitem:ae4dc10b744019a92efffbcc1ece189e4 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">double **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#ae4dc10b744019a92efffbcc1ece189e4">end_p</a></td></tr>
<tr class="memitem:abe6c99e9fa26d0764014c5f2913ed6c9 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">double *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#abe6c99e9fa26d0764014c5f2913ed6c9">ch_p</a></td></tr>
</table>
<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>The <a class="el" href="classvoro_1_1pre__container.html" title="A class for storing an arbitrary number of particles without radius information, prior to setting up ...">pre_container</a> class is an extension of the <a class="el" href="classvoro_1_1pre__container__base.html" title="A class for storing an arbitrary number of particles, prior to setting up a container geometry...">pre_container_base</a> class for cases when no particle radius information is available. </p>
<p>Definition at line <a class="el" href="pre__container_8hh_source.html#l00101">101</a> of file <a class="el" href="pre__container_8hh_source.html">pre_container.hh</a>.</p>
</div><hr/><h2>Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="a6b1faf934a8f416c595b6f0be5832bbe"></a>
<div class="memitem">
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<td class="memname">voro::pre_container::pre_container </td>
<td>(</td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>ax_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>bx_</em>, </td>
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<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>ay_</em>, </td>
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<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>by_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>az_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>bz_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool&#160;</td>
<td class="paramname"><em>xperiodic_</em>, </td>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool&#160;</td>
<td class="paramname"><em>yperiodic_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool&#160;</td>
<td class="paramname"><em>zperiodic_</em>&#160;</td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
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</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span> </td>
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</div><div class="memdoc">
<p>The class constructor sets up the geometry of container, initializing the minimum and maximum coordinates in each direction. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">(ax_,bx_)</td><td>the minimum and maximum x coordinates. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">(ay_,by_)</td><td>the minimum and maximum y coordinates. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">(az_,bz_)</td><td>the minimum and maximum z coordinates. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">(xperiodic_,yperiodic_,zperiodic_</td><td>) flags setting whether the container is periodic in each coordinate direction. </td></tr>
</table>
</dd>
</dl>
<p>Definition at line <a class="el" href="pre__container_8hh_source.html#l00112">112</a> of file <a class="el" href="pre__container_8hh_source.html">pre_container.hh</a>.</p>
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</div>
<hr/><h2>Member Function Documentation</h2>
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<td class="memname">void voro::pre_container::import </td>
<td>(</td>
<td class="paramtype">FILE *&#160;</td>
<td class="paramname"><em>fp</em> = <code>stdin</code></td><td>)</td>
<td></td>
</tr>
</table>
</div><div class="memdoc">
<p>Import a list of particles from an open file stream into the container. Entries of four numbers (Particle ID, x position, y position, z position) are searched for. If the file cannot be successfully read, then the routine causes a fatal error. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">fp</td><td>the file handle to read from. </td></tr>
</table>
</dd>
</dl>
<p>Definition at line <a class="el" href="pre__container_8cc_source.html#l00190">190</a> of file <a class="el" href="pre__container_8cc_source.html">pre_container.cc</a>.</p>
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</div>
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<td class="memname">void voro::pre_container::import </td>
<td>(</td>
<td class="paramtype">const char *&#160;</td>
<td class="paramname"><em>filename</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span> </td>
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<p>Imports particles from a file. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">filename</td><td>the name of the file to read from. </td></tr>
</table>
</dd>
</dl>
<p>Definition at line <a class="el" href="pre__container_8hh_source.html#l00119">119</a> of file <a class="el" href="pre__container_8hh_source.html">pre_container.hh</a>.</p>
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<td class="memname">void voro::pre_container::put </td>
<td>(</td>
<td class="paramtype">int&#160;</td>
<td class="paramname"><em>n</em>, </td>
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<td class="paramtype">double&#160;</td>
<td class="paramname"><em>x</em>, </td>
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<td class="paramtype">double&#160;</td>
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<td class="paramtype">double&#160;</td>
<td class="paramname"><em>z</em>&#160;</td>
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<p>Stores a particle ID and position, allocating a new memory chunk if necessary. For coordinate directions in which the container is not periodic, the routine checks to make sure that the particle is within the container bounds. If the particle is out of bounds, it is not stored. </p>
<dl class="params"><dt>Parameters:</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">n</td><td>the numerical ID of the inserted particle. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">(x,y,z)</td><td>the position vector of the inserted particle. </td></tr>
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<p>Definition at line <a class="el" href="pre__container_8cc_source.html#l00071">71</a> of file <a class="el" href="pre__container_8cc_source.html">pre_container.cc</a>.</p>
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<td class="memname">void voro::pre_container::setup </td>
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<td class="paramtype"><a class="el" href="classvoro_1_1container.html">container</a> &amp;&#160;</td>
<td class="paramname"><em>con</em></td><td>)</td>
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<p>Transfers the particles stored within the class to a container class. </p>
<dl class="params"><dt>Parameters:</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">con</td><td>the container class to transfer to. </td></tr>
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<p>Definition at line <a class="el" href="pre__container_8cc_source.html#l00099">99</a> of file <a class="el" href="pre__container_8cc_source.html">pre_container.cc</a>.</p>
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<td class="memname">void voro::pre_container::setup </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classvoro_1_1particle__order.html">particle_order</a> &amp;&#160;</td>
<td class="paramname"><em>vo</em>, </td>
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<td class="paramtype"><a class="el" href="classvoro_1_1container.html">container</a> &amp;&#160;</td>
<td class="paramname"><em>con</em>&#160;</td>
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<p>Transfers the particles stored within the class to a container class, also recording the order in which particles were stored. </p>
<dl class="params"><dt>Parameters:</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">vo</td><td>the ordering class to use. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">con</td><td>the container class to transfer to. </td></tr>
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<p>Definition at line <a class="el" href="pre__container_8cc_source.html#l00143">143</a> of file <a class="el" href="pre__container_8cc_source.html">pre_container.cc</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
<li><a class="el" href="pre__container_8hh_source.html">pre_container.hh</a></li>
<li><a class="el" href="pre__container_8cc_source.html">pre_container.cc</a></li>
</ul>
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