Homec4science
Diffusion lammps (efficient_neuronet) Browse

lammps/src/DEPEND/fastdep.c
76acb8caf15fefficient_neuronet

Last Change
Raw File

fastdep.c
View Options

/* Fast dependency generator for LAMMPS
* (c) 2016 Axel Kohlmeyer <akohlmey@gmail.com>
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions
* are met:
*
* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* * Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in the
* documentation and/or other materials provided with the distribution.
* * Neither the name of the <organization> nor the
* names of its contributors may be used to endorse or promote products
* derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL <COPYRIGHT HOLDER> BE LIABLE FOR ANY
* DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
* THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <sys/types.h>
#include <sys/stat.h>
const char version[] = "2.1";
/* store list of accepted extensions for object targets */
static const char *extensions[] = { ".cpp", ".c", ".cu" };
static const int numextensions = sizeof(extensions)/sizeof(const char *);
/* strdup() is not part of ANSI C. provide a replacement for portability */
static char *my_strdup(const char *src)
{
int len;
char *ptr;
if (src == NULL) return NULL;
len = strlen(src);
ptr = (char *)malloc(len+1);
if (ptr) memcpy(ptr,src,len+1);
return ptr;
}
/************************************************************************
* utility functions
************************************************************************/
/* remove trailing path separators */
char *trim_path(char *path)
{
int last = strlen(path) - 1;
while ((path[last] == '/') || (path[last] == '\\'))
--last;
path[++last] = '\0';
return path;
}
/* test if a file exists */
int file_exists(const char *path)
{
#if defined(_WIN32)
struct _stat s;
if (path == NULL) return 0;
if (_stat(path,&s) != 0) return 0;
return 1;
#else
struct stat s;
if (path == NULL) return 0;
if (stat(path,&s) != 0) return 0;
return 1;
#endif
}
/* simple integer square root */
static int isqrt(int n)
{
int b = 0;
while(n >= 0) {
n = n - b;
b = b + 1;
n = n - b;
}
return b - 1;
}
/* determine next available prime number */
static int next_prime(const int num)
{
int nprime, factor, root;
/* nprime has to be larger than num and odd */
nprime = num + (num & 1) + 1;
/* there is always a prime between n and 2n */
while (nprime < 2*num) {
/* brute force division test on odd factors up to sqrt(nprime) */
root = isqrt(nprime)+1;
for (factor = 3; factor < root; factor +=2) {
if (nprime % factor == 0) break;
}
/* if the loop didn't exit early, we have found a prime */
if (factor >= root) return nprime;
nprime += 2;
}
return nprime;
}
/* FNV hash function */
static unsigned int hash_func(const void *key)
{
const unsigned char *p = key;
unsigned int h = 2166136261;
if (!p) return 0;
while (*p) {
h = (h * 16777619) ^ *p;
++p;
}
return h;
}
/************************************************************************
* structs for data structures
************************************************************************/
/* linked list */
typedef struct _llnode llnode_t;
struct _llnode {
const char *key;
llnode_t *next;
};
typedef struct {
llnode_t *head;
llnode_t *tail;
int count;
} llist_t;
/* set */
typedef struct {
llnode_t *buckets;
int nbuckets;
int count;
} set_t;
/* map */
typedef struct _mapnode mapnode_t;
struct _mapnode {
const char *key;
set_t *val;
mapnode_t *next;
};
typedef struct {
mapnode_t *buckets;
int nbuckets;
int count;
} map_t;
/************************************************************************
* linked list functions
************************************************************************/
/* allocate and intitialize linked list */
static llist_t *llist_init()
{
llist_t *ll;
ll = (llist_t *)malloc(sizeof(llist_t));
if (ll != NULL) {
ll->head = (llnode_t *)malloc(sizeof(llnode_t));
ll->head->next = NULL;
ll->head->key = NULL;
ll->tail = ll->head;
ll->count = 0;
}
return ll;
}
/* destroy linked list and free all associated storage */
static void llist_free(llist_t *ll)
{
llnode_t *tmp;
if (ll == NULL) return;
while (ll->head->next) {
tmp = ll->head;
ll->head = ll->head->next;
free((void *)tmp->key);
free((void *)tmp);
}
free((void *)ll->head);
free((void *)ll);
}
/* append an item to the end of the linked list */
static void llist_append(llist_t *ll, const char *key)
{
llnode_t *tmp;
if ((ll == NULL) || (key == NULL)) return;
ll->tail->key = my_strdup(key);
ll->count ++;
tmp = (llnode_t *)malloc(sizeof(llnode_t));
tmp->key = NULL;
tmp->next = NULL;
ll->tail->next = tmp;
ll->tail = tmp;
}
static int llist_size(llist_t *ll)
{
if (ll) return ll->count;
return 0;
}
static void llist_print(llist_t *ll)
{
llnode_t *tmp;
if (ll == NULL) return;
tmp = ll->head;
if (tmp->next) {
fputs(tmp->key,stdout);
tmp = tmp->next;
}
while (tmp->next) {
fputc(':',stdout);
fputs(tmp->key,stdout);
tmp = tmp->next;
}
fputc('\n',stdout);
}
/************************************************************************
* set functions
************************************************************************/
/* initialize empty set */
static set_t *set_init(int num)
{
set_t *s = (set_t *)malloc(sizeof(set_t));
s->nbuckets = next_prime(num);
s->buckets = malloc(s->nbuckets*sizeof(llnode_t));
memset(s->buckets,0,s->nbuckets*sizeof(llnode_t));
s->count = 0;
return s;
}
/* destroy a set and free the associated storage */
static void set_free(set_t *s)
{
llnode_t *tmp, *next;
int i;
if (!s) return;
for (i = 0; i < s->nbuckets; ++i) {
tmp = s->buckets + i;
while (tmp->next != NULL) {
free((void *)tmp->key);
next = tmp->next->next;
tmp->key = tmp->next->key;
free((void *)tmp->next);
tmp->next = next;
}
}
free((void *)s->buckets);
free((void *)s);
}
/* add an entry to the set */
static void set_add(set_t *s, const char *key)
{
llnode_t *tmp;
unsigned int idx;
if (!s) return;
idx = hash_func(key) % s->nbuckets;
tmp = s->buckets + idx;
while (tmp->next != NULL) {
if (strcmp(tmp->key,key) == 0) return;
tmp = tmp->next;
}
s->count ++;
tmp->key = my_strdup(key);
tmp->next = (llnode_t *)malloc(sizeof(llnode_t));
tmp = tmp->next;
tmp->key = NULL;
tmp->next = NULL;
}
/* find an entry in the set */
static int set_find(set_t *s, const char *key)
{
llnode_t *tmp;
unsigned int idx;
if (!s) return 0;
idx = hash_func(key) % s->nbuckets;
tmp = s->buckets + idx;
while (tmp->next != NULL) {
if (strcmp(tmp->key,key) == 0) return 1;
tmp = tmp->next;
}
return 0;
}
static int set_size(set_t *s)
{
if (s) return s->count;
return 0;
}
/************************************************************************
* map functions
************************************************************************/
/* initialize empty map */
static map_t *map_init(int num)
{
map_t *m = (map_t *)malloc(sizeof(map_t));
if (!m) return NULL;
m->nbuckets = next_prime(num);
m->buckets = malloc(m->nbuckets*sizeof(mapnode_t));
memset(m->buckets,0,m->nbuckets*sizeof(mapnode_t));
m->count = 0;
return m;
}
/* destroy a map and free the associated storage */
static void map_free(map_t *m)
{
mapnode_t *tmp, *next;
int i;
if (!m) return;
for (i = 0; i < m->nbuckets; ++i) {
tmp = m->buckets + i;
while (tmp->next != NULL) {
free((void *)tmp->key);
set_free(tmp->val);
next = tmp->next->next;
tmp->key = tmp->next->key;
tmp->val = tmp->next->val;
free((void *)tmp->next);
tmp->next = next;
}
}
free((void *)m->buckets);
free((void *)m);
}
/* add an entry to the map */
static void map_add(map_t *m, const char *key, const char *val)
{
mapnode_t *tmp;
unsigned int idx;
if (!m) return;
idx = hash_func(key) % m->nbuckets;
tmp = m->buckets + idx;
while (tmp->next != NULL) {
if (strcmp(tmp->key,key) == 0) break;
tmp = tmp->next;
}
/* add new entry to map */
if (tmp->next == NULL) {
m->count ++;
tmp->key = my_strdup(key);
tmp->val = set_init(50); /* XXX: chosen arbitrarily */
tmp->next = (mapnode_t *)malloc(sizeof(mapnode_t));
tmp->next->key = NULL;
tmp->next->val = NULL;
tmp->next->next = NULL;
}
set_add(tmp->val,val);
}
/* return an entry in the map */
static set_t *map_find(map_t *m, const char *key)
{
mapnode_t *tmp;
unsigned int idx;
if (!m) return 0;
idx = hash_func(key) % m->nbuckets;
tmp = m->buckets + idx;
while (tmp->next != NULL) {
if (strcmp(tmp->key,key) == 0) return tmp->val;
tmp = tmp->next;
}
return NULL;
}
static int map_size(map_t *m)
{
if (m) return m->count;
return 0;
}
/************************************************************************/
/* combine search for file across paths */
static void make_path(const char *file, llist_t *paths, char *buffer)
{
llnode_t *tmp;
const char *val;
int i;
tmp = paths->head;
buffer[0] = '\0';
while (tmp->next != NULL) {
i = 0;
val = tmp->key;
while (*val) buffer[i++] = *val++;
#if defined(_WIN32)
buffer[i++] = '\\';
#else
buffer[i++] = '/';
#endif
val = file;
while (*val) buffer[i++] = *val++;
buffer[i] = '\0';
if (file_exists(buffer)) return;
tmp = tmp->next;
}
buffer[0] = '\0';
}
/************************************************************************/
static void find_includes(llnode_t *head, llist_t *todo, llist_t *paths,
set_t *incl, map_t *deps)
{
FILE *fp;
llnode_t *tmp;
char *buffer,*full,*ptr,*end;
const char *file;
buffer = (char *)malloc(4096);
full = (char *)malloc(4096);
tmp = head;
while (tmp->next != NULL) {
file = tmp->key;
fp = fopen(file,"r");
if (fp == NULL) {
perror("Cannot read source");
fprintf(stderr,"For file: %s\n",file);
exit(EXIT_FAILURE);
}
/* read file line by line and look for #include "..." */
while (!feof(fp) && !ferror(fp)) {
if (fgets(buffer,4096,fp) == NULL) continue;
ptr = buffer;
while (*ptr == ' ' || *ptr == '\t') ++ptr;
if (*ptr != '#') continue;
while (*ptr == ' ' || *ptr == '\t') ++ptr;
if (*++ptr != 'i') continue;
if (*++ptr != 'n') continue;
if (*++ptr != 'c') continue;
if (*++ptr != 'l') continue;
if (*++ptr != 'u') continue;
if (*++ptr != 'd') continue;
if (*++ptr != 'e') continue;
++ptr;
while (*ptr == ' ' || *ptr == '\t') ++ptr;
if (*ptr != '"') continue;
++ptr;
end = ptr;
while (*end != '"') {
if (*end == '\0') {
fprintf(stderr,"Unmatched '\"': %s\n",buffer);
exit(EXIT_FAILURE);
}
++end;
}
*end = '\0';
/* get full path to include file */
make_path(ptr,paths,full);
/* skip, if not found or unreadable. */
if (full[0] == '\0') continue;
/* if this is a yet unknown include, add to the
* todo list, if append is enabled */
if (set_find(incl,full) == 0) {
set_add(incl,full);
llist_append(todo,full);
}
map_add(deps,file,full);
}
fclose(fp);
tmp = tmp->next;
}
free(buffer);
free(full);
}
/************************************************************************/
static void add_depend(const char *source, set_t *incl, map_t *deps)
{
set_t *mydeps;
llnode_t *tmp;
int i,num;
if (source == NULL) return;
mydeps = map_find(deps,source);
if (mydeps != NULL) {
num = mydeps->nbuckets;
for (i = 0; i < num; ++i) {
tmp = mydeps->buckets + i;
while (tmp->next != NULL) {
if (set_find(incl,tmp->key) == 0) {
set_add(incl,tmp->key);
add_depend(tmp->key,incl,deps);
}
tmp = tmp->next;
}
}
}
}
/************************************************************************/
static void do_depend(llnode_t *head, map_t *deps)
{
llnode_t *tmp, *lnk;
set_t *incl;
const char *source;
char *target, *ptr;
int i,num,ext;
tmp = head;
while (tmp->next != NULL) {
source = tmp->key;
target = strrchr(source,'/');
if (target == NULL) {
target = my_strdup(source);
} else {
target = my_strdup(target+1);
}
ext = 0;
ptr = strrchr(target,'.');
if (ptr != NULL) {
for (i = 0; i < numextensions; ++i) {
if (strcmp(ptr,extensions[i]) == 0) ++ext;
}
if (ext > 0) {
ptr[1] = 'o';
ptr[2] = '\0';
}
}
if (ext > 0) {
fputs(target,stdout);
fputs(" : ",stdout);
fputs(source,stdout);
incl = set_init(50);
add_depend(source,incl,deps);
num = incl->nbuckets;
for (i = 0; i < num; ++i) {
lnk = incl->buckets + i;
while (lnk->next != NULL) {
fputc(' ',stdout);
fputs(lnk->key,stdout);
lnk = lnk->next;
}
}
fputc('\n',stdout);
set_free(incl);
}
free((void *)target);
tmp = tmp->next;
}
}
/************************************************************************/
int main(int argc, char **argv)
{
llist_t *paths,*src,*todo;
set_t *incl;
map_t *deps;
if (argc < 2) {
fprintf(stderr,"FastDep v%s for LAMMPS\n"
"Usage: %s [-I <path> ...] -- <src1> [<src2> ...]\n",
version,argv[0]);
fprintf(stderr,"Supported extensions: %d, %s, %s\n",numextensions,
extensions[0], extensions[1]);
return 1;
}
/* hash tables for all known included files and dependencies
* we guesstimate a little over 2x as many entries as sources. */
incl = set_init(2*argc);
deps = map_init(2*argc);
/* list of include search paths. prefixed by "." and "..". */
paths = llist_init();
llist_append(paths,".");
llist_append(paths,"..");
while (++argv, --argc > 0) {
if (strncmp(*argv, "-I", 2) == 0) {
if ((*argv)[2] != '\0') {
llist_append(paths,trim_path(*argv+2));
} else {
++argv;
--argc;
if (argc > 0) {
if (strcmp(*argv,"--") == 0) {
break;
} else {
llist_append(paths,trim_path(*argv));
}
}
}
} else if (strcmp(*argv,"--") == 0) {
break;
} /* ignore all unrecognized arguments before '--'. */
}
src = llist_init();
while (++argv, --argc > 0) {
llist_append(src,*argv);
}
/* process files to look for includes */
todo = llist_init();
find_includes(src->head,todo,paths,incl,deps);
find_includes(todo->head,todo,paths,incl,deps);
llist_free(todo);
fprintf(stdout,"# FastDep v%s for LAMMPS\n",version);
fputs("# Search path: ",stdout);
llist_print(paths);
fprintf(stdout,"# % 5d sources\n# % 5d includes\n# % 5d depfiles\n",
llist_size(src),set_size(incl),map_size(deps));
set_free(incl);
do_depend(src->head,deps);
llist_free(src);
llist_free(paths);
map_free(deps);
return 0;
}
/*
* Local Variables:
* compile-command: "gcc -o fastdep.exe -Wall -g -O fastdep.c"
* c-basic-offset: 4
* End:
*/
c4science · Help