Homec4science
Diffusion lammps (efficient_neuronet) Browse

lammps/test/hyb1.gpu1.log
4d96e85601aeefficient_neuronet

Last Change
Raw File

hyb1.gpu1.log
View Options

LAMMPS (25 Oct 2011)
using 1 OpenMP thread(s) per MPI task
package gpu force 0 0 1 threads_per_atom 1
variable x index 1
variable y index 1
variable z index 1
variable xx equal 10*$x
variable xx equal 10*1
variable yy equal 10*$y
variable yy equal 10*1
variable zz equal 10*$z
variable zz equal 10*1
units lj
atom_style charge
newton off
lattice fcc 0.8442
Lattice spacing in x,y,z = 1.6796 1.6796 1.6796
region box block 0 ${xx} 0 ${yy} 0 ${zz}
region box block 0 10 0 ${yy} 0 ${zz}
region box block 0 10 0 10 0 ${zz}
region box block 0 10 0 10 0 10
region half block 0 ${xx} 0 ${yy} 0 4.5
region half block 0 10 0 ${yy} 0 4.5
region half block 0 10 0 10 0 4.5
create_box 2 box
Created orthogonal box = (0 0 0) to (16.796 16.796 16.796)
1 by 1 by 3 processor grid
create_atoms 1 box
Created 4000 atoms
group ga region box
4000 atoms in group ga
group gp region half
2000 atoms in group gp
group gn subtract ga gp
2000 atoms in group gn
set group gp charge 0.5
2000 settings made for charge
set group gn charge -0.5
2000 settings made for charge
set group gn type 2
2000 settings made for type
mass 1 1.0
mass 2 1.1
velocity all create 1.44 87287 loop geom
pair_style hybrid lj/cut/coul/cut/gpu 2.5 5.0 lj/cut 2.5
pair_coeff 1 1 lj/cut/coul/cut/gpu 1.0 1.0
pair_coeff 1 2 lj/cut/coul/cut/gpu 0.95 0.9
pair_coeff 2 2 lj/cut 0.8 0.85
neighbor 0.3 bin
neigh_modify delay 0 every 20 check no
fix 1 all nve
timestep 0.003
thermo 100
thermo_style custom step temp evdwl ecoul epair etotal press
run 400
Memory usage per processor = 13.6845 Mbytes
Step Temp E_vdwl E_coul E_pair TotEng Press
0 1.44 -4.6540199 3.2322455 -1.4217745 0.73768554 -2.9369759
100 1.1663385 -4.0342659 2.6671734 -1.3670924 0.3819779 1.8370984
200 1.2770233 -3.948079 1.9776143 -1.9704647 -0.055408608 2.169048
300 1.3235614 -3.8448674 1.5238187 -2.3210487 -0.3362029 2.5380734
400 1.3704577 -3.7952306 1.2357069 -2.5595236 -0.50435108 2.4809038
Loop time of 2.26206 on 3 procs (3 MPI x 1 OpenMP) for 400 steps with 4000 atoms
Pair time (%) = 1.50871 (66.6962)
Neigh time (%) = 0.620035 (27.4101)
Comm time (%) = 0.110706 (4.89401)
Outpt time (%) = 0.0113494 (0.501726)
Other time (%) = 0.0112642 (0.49796)
Nlocal: 1333.33 ave 1447 max 1126 min
Histogram: 1 0 0 0 0 0 0 0 0 2
Nghost: 8984.67 ave 9146 max 8863 min
Histogram: 1 0 1 0 0 0 0 0 0 1
Neighs: 361729 ave 422276 max 286813 min
Histogram: 1 0 0 0 0 0 1 0 0 1
FullNghs: 482987 ave 543428 max 373737 min
Histogram: 1 0 0 0 0 0 0 0 0 2
Total # of neighbors = 1448960
Ave neighs/atom = 362.24
Neighbor list builds = 20
Dangerous builds = 0
c4science · Help