Homec4science
Diffusion lammps (efficient_neuronet) Browse

lammps/tools/README
576c6315c7f1efficient_neuronet

Last Change
Raw File

README
View Options

LAMMPS pre- and post-processing tools
This directory contains several stand-alone tools for creating LAMMPS
input files and massaging LAMMPS output data. Instructions on how to
use the tools are discussed in the "Additional Tools" section of the
LAMMPS documentation.
Tools that are single source files in this directory have additional
comments that may be useful at the top of the source file. Tools that
reside in their own sub-directories have README files you should look
at.
These are the included tools:
amber2lmp python scripts for using AMBER to setup LAMMPS input
binary2txt convert a LAMMPS dump file from binary to ASCII text
ch2lmp convert CHARMM files to LAMMPS input
chain create a data file of bead-spring chains
colvars post-process output of the fix colvars command
createatoms generate lattices of atoms within a geometry
data2xmovie convert a data file to a snapshot that xmovie can viz
drude create Drude core/electron atom pairs in a data file
eam_database one tool to generate EAM alloy potential files
eam_generate 2nd tool to generate EAM alloy potential files
eff scripts for working with the eFF (electron force field)
emacs add-ons to EMACS editor for editing LAMMPS input scripts
fep scripts for free-energy perturbation with USER-FEP pkg
i-pi Python wrapper for performing path-integral MD (PIMD)
ipp input pre-processor Perl tool for creating input scripts
lmp2arc convert LAMMPS output to Accelrys Insight format
lmp2cfg convert LAMMPS output to CFG files for AtomEye viz
lmp2traj convert LAMMPS output to contour, density profiles
lmp2vmd tools for visualizing and analyzing LAMMPS data with VMD
matlab MatLab scripts for post-processing LAMMPS output
micelle2d create a data file of small lipid chains in solvent
msi2lmp use Accelrys Insight code to setup LAMMPS input
phonon post-process output of the fix phonon command
pymol_asphere convert LAMMPS output of ellipsoids to PyMol format
python Python scripts for post-processing LAMMPS output
reax Tools for analyzing output of ReaxFF simulations
vim add-ons to VIM editor for editing LAMMPS input scripts
xmovie a quick/simple viz package (2d projections of 3d)
xmgrace a collection of scripts to generate xmgrace plots
For tools that are single C, C++, or Fortran files, a Makefile for
building them is included in this directory. You may need to edit it
for the compilers and paths on your system.
For tools in their own sub-directories, see their README file for info
on how to build and use it.
c4science · Help