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lammps/tools/matlab/readlog.m
cb83fd5c2b24efficient_neuronet

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readlog.m
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function [varargout] = readlog(varargin)
% Read LAMMPS log files
% input is log file name with path
% output is a structure --> out
% out.Chead --> has heading of columns in each run
% out.data --> has the data during each run in the form of string
% Type str2num(out.data{i}) to get the numeric array
%
% Example
% logdata = readlog('log.LAMMPS');
%
% Author : sarunkarthi@gmail.com
% http://web.ics.purdue.edu/~asubrama/pages/Research_Main.htm
% Arun K. Subramaniyan
% School of Aeronautics and Astronautics
% Purdue University, West Lafayette, IN - 47907, USA.
logfile = varargin{1};
try
fid = fopen(logfile,'r');
catch
error('Log file not found!');
end
loop = 1;
while feof(fid) == 0
%----------- To get first line of thermo output --------
while feof(fid) == 0
a = fgetl(fid);
if length(a) > 4 && strcmp(a(1:4),'Step')
findstep = 1;
break;
end
end
%-------------------------------------------------------
%---------Seperate column headings----------------------
j=1;
k=1;
Ch='';
i=1;
while i < length(a) && findstep == 1
for i = k : 1 : length(a)
if strcmp(a(i),' ')
Chead{loop,j} = Ch;
clear Ch;
Ch = '';
k=i+1;
j=j+1;
break;
else
Ch = [Ch a(i)];
end
end
end
if findstep == 1
Chead{loop,j} = Ch; % to get the last column heading
end
%-------------------------------------------------------
%----------------------Get Data-------------------------
id = 1; %row id...
while feof(fid) == 0
a = fgetl(fid);
if strcmp(a(1:4),'Loop')
loop = loop + 1;
break;
else
logdata(id,:) = str2num(a);
id = id+1;
end
end
%--------------------------------------------------------
if feof(fid) == 0
b = num2str(logdata);
data{loop-1} = b;
clear b;
clear logdata;
findstep = 0;
end
end
fclose(fid);
%--------OUTPUT-------------------------------------------
out.Chead = Chead;
out.data = data;
varargout{1} = out;
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