Homec4science
Diffusion lammps (efficient_neuronet) Browse

lammps/tools/phonon/interpolate.cpp
49804d97059fefficient_neuronet

Last Change
Raw File

interpolate.cpp
View Options

#include "interpolate.h"
#include "math.h"
#include "global.h"
/* ----------------------------------------------------------------------------
* Constructor used to get info from caller, and prepare other necessary data
* ---------------------------------------------------------------------------- */
Interpolate::Interpolate(int nx, int ny, int nz, int ndm, doublecomplex **DM)
{
Nx = nx;
Ny = ny;
Nz = nz;
Npt = Nx*Ny*Nz;
ndim = ndm;
memory = new Memory();
which = UseGamma = 0;
data = DM;
Dfdx = Dfdy = Dfdz = D2fdxdy = D2fdxdz = D2fdydz = D3fdxdydz = NULL;
flag_reset_gamma = flag_allocated_dfs = 0;
return;
}
/* ----------------------------------------------------------------------------
* Private method to initialize tricubic interpolations
* ---------------------------------------------------------------------------- */
void Interpolate::tricubic_init()
{
// prepare necessary data for tricubic
if (flag_allocated_dfs == 0){
memory->create(Dfdx, Npt, ndim, "Interpolate_Interpolate:Dfdx");
memory->create(Dfdy, Npt, ndim, "Interpolate_Interpolate:Dfdy");
memory->create(Dfdz, Npt, ndim, "Interpolate_Interpolate:Dfdz");
memory->create(D2fdxdy, Npt, ndim, "Interpolate_Interpolate:D2fdxdy");
memory->create(D2fdxdz, Npt, ndim, "Interpolate_Interpolate:D2fdxdz");
memory->create(D2fdydz, Npt, ndim, "Interpolate_Interpolate:D2fdydz");
memory->create(D3fdxdydz, Npt, ndim, "Interpolate_Interpolate:D2fdxdydz");
flag_allocated_dfs = 1;
}
// get the derivatives
int n=0;
const double half = 0.5, one4 = 0.25, one8 = 0.125;
for (int ii = 0; ii < Nx; ++ii)
for (int jj = 0; jj < Ny; ++jj)
for (int kk = 0; kk < Nz; ++kk){
int ip = (ii+1)%Nx, jp = (jj+1)%Ny, kp = (kk+1)%Nz;
int im = (ii-1+Nx)%Nx, jm = (jj-1+Ny)%Ny, km = (kk-1+Nz)%Nz;
int p100 = (ip*Ny+jj)*Nz+kk;
int p010 = (ii*Ny+jp)*Nz+kk;
int p001 = (ii*Ny+jj)*Nz+kp;
int p110 = (ip*Ny+jp)*Nz+kk;
int p101 = (ip*Ny+jj)*Nz+kp;
int p011 = (ii*Ny+jp)*Nz+kp;
int pm00 = (im*Ny+jj)*Nz+kk;
int p0m0 = (ii*Ny+jm)*Nz+kk;
int p00m = (ii*Ny+jj)*Nz+km;
int pmm0 = (im*Ny+jm)*Nz+kk;
int pm0m = (im*Ny+jj)*Nz+km;
int p0mm = (ii*Ny+jm)*Nz+km;
int p1m0 = (ip*Ny+jm)*Nz+kk;
int p10m = (ip*Ny+jj)*Nz+km;
int p01m = (ii*Ny+jp)*Nz+km;
int pm10 = (im*Ny+jp)*Nz+kk;
int pm01 = (im*Ny+jj)*Nz+kp;
int p0m1 = (ii*Ny+jm)*Nz+kp;
int p111 = (ip*Ny+jp)*Nz+kp;
int pm11 = (im*Ny+jp)*Nz+kp;
int p1m1 = (ip*Ny+jm)*Nz+kp;
int p11m = (ip*Ny+jp)*Nz+km;
int pm1m = (im*Ny+jp)*Nz+km;
int p1mm = (ip*Ny+jm)*Nz+km;
int pmm1 = (im*Ny+jm)*Nz+kp;
int pmmm = (im*Ny+jm)*Nz+km;
for (int idim=0; idim<ndim; idim++){
Dfdx[n][idim].r = (data[p100][idim].r - data[pm00][idim].r) * half;
Dfdx[n][idim].i = (data[p100][idim].i - data[pm00][idim].i) * half;
Dfdy[n][idim].r = (data[p010][idim].r - data[p0m0][idim].r) * half;
Dfdy[n][idim].i = (data[p010][idim].i - data[p0m0][idim].i) * half;
Dfdz[n][idim].r = (data[p001][idim].r - data[p00m][idim].r) * half;
Dfdz[n][idim].i = (data[p001][idim].i - data[p00m][idim].i) * half;
D2fdxdy[n][idim].r = (data[p110][idim].r - data[p1m0][idim].r - data[pm10][idim].r + data[pmm0][idim].r) * one4;
D2fdxdy[n][idim].i = (data[p110][idim].i - data[p1m0][idim].i - data[pm10][idim].i + data[pmm0][idim].i) * one4;
D2fdxdz[n][idim].r = (data[p101][idim].r - data[p10m][idim].r - data[pm01][idim].r + data[pm0m][idim].r) * one4;
D2fdxdz[n][idim].i = (data[p101][idim].i - data[p10m][idim].i - data[pm01][idim].i + data[pm0m][idim].i) * one4;
D2fdydz[n][idim].r = (data[p011][idim].r - data[p01m][idim].r - data[p0m1][idim].r + data[p0mm][idim].r) * one4;
D2fdydz[n][idim].i = (data[p011][idim].i - data[p01m][idim].i - data[p0m1][idim].i + data[p0mm][idim].i) * one4;
D3fdxdydz[n][idim].r = (data[p111][idim].r-data[pm11][idim].r - data[p1m1][idim].r - data[p11m][idim].r +
data[p1mm][idim].r+data[pm1m][idim].r + data[pmm1][idim].r - data[pmmm][idim].r) * one8;
D3fdxdydz[n][idim].i = (data[p111][idim].i-data[pm11][idim].i - data[p1m1][idim].i - data[p11m][idim].i +
data[p1mm][idim].i+data[pm1m][idim].i + data[pmm1][idim].i - data[pmmm][idim].i) * one8;
}
n++;
}
return;
}
/* ----------------------------------------------------------------------------
* Deconstructor used to free memory
* ---------------------------------------------------------------------------- */
Interpolate::~Interpolate()
{
data = NULL;
memory->destroy(Dfdx);
memory->destroy(Dfdy);
memory->destroy(Dfdz);
memory->destroy(D2fdxdy);
memory->destroy(D2fdxdz);
memory->destroy(D2fdydz);
memory->destroy(D3fdxdydz);
delete memory;
}
/* ----------------------------------------------------------------------------
* Tricubic interpolation, by calling the tricubic library
* ---------------------------------------------------------------------------- */
void Interpolate::tricubic(double *qin, doublecomplex *DMq)
{
// qin should be in unit of 2*pi/L
double q[3];
for (int i = 0; i < 3; ++i) q[i] = qin[i];
for (int i = 0; i < 3; ++i){
while (q[i] < 0.) q[i] += 1.;
while (q[i] >= 1.) q[i] -= 1.;
}
int ix = int(q[0]*double(Nx));
int iy = int(q[1]*double(Ny));
int iz = int(q[2]*double(Nz));
double x = q[0]*double(Nx)-double(ix);
double y = q[1]*double(Ny)-double(iy);
double z = q[2]*double(Nz)-double(iz);
int ixp = (ix+1)%Nx, iyp = (iy+1)%Ny, izp = (iz+1)%Nz;
vidx[0] = (ix*Ny+iy)*Nz+iz;
vidx[1] = (ixp*Ny+iy)*Nz+iz;
vidx[2] = (ix*Ny+iyp)*Nz+iz;
vidx[3] = (ixp*Ny+iyp)*Nz+iz;
vidx[4] = (ix*Ny+iy)*Nz+izp;
vidx[5] = (ixp*Ny+iy)*Nz+izp;
vidx[6] = (ix*Ny+iyp)*Nz+izp;
vidx[7] = (ixp*Ny+iyp)*Nz+izp;
for (int i=0; i<8; i++) if (vidx[i] == 0) UseGamma = 1;
for (int idim = 0; idim < ndim; ++idim){
for (int i = 0; i < 8; ++i){
f[i] = data[vidx[i]][idim].r;
dfdx[i] = Dfdx[vidx[i]][idim].r;
dfdy[i] = Dfdy[vidx[i]][idim].r;
dfdz[i] = Dfdz[vidx[i]][idim].r;
d2fdxdy[i] = D2fdxdy[vidx[i]][idim].r;
d2fdxdz[i] = D2fdxdz[vidx[i]][idim].r;
d2fdydz[i] = D2fdydz[vidx[i]][idim].r;
d3fdxdydz[i] = D3fdxdydz[vidx[i]][idim].r;
}
tricubic_get_coeff(&a[0],&f[0],&dfdx[0],&dfdy[0],&dfdz[0],&d2fdxdy[0],&d2fdxdz[0],&d2fdydz[0],&d3fdxdydz[0]);
DMq[idim].r = tricubic_eval(&a[0],x,y,z);
for (int i = 0; i < 8; ++i){
f[i] = data[vidx[i]][idim].i;
dfdx[i] = Dfdx[vidx[i]][idim].i;
dfdy[i] = Dfdy[vidx[i]][idim].i;
dfdz[i] = Dfdz[vidx[i]][idim].i;
d2fdxdy[i] = D2fdxdy[vidx[i]][idim].i;
d2fdxdz[i] = D2fdxdz[vidx[i]][idim].i;
d2fdydz[i] = D2fdydz[vidx[i]][idim].i;
d3fdxdydz[i] = D3fdxdydz[vidx[i]][idim].i;
}
tricubic_get_coeff(&a[0],&f[0],&dfdx[0],&dfdy[0],&dfdz[0],&d2fdxdy[0],&d2fdxdz[0],&d2fdydz[0],&d3fdxdydz[0]);
DMq[idim].i = tricubic_eval(&a[0],x,y,z);
}
return;
}
/* ----------------------------------------------------------------------------
* method to interpolate the DM at an arbitrary q point;
* the input q should be a vector in unit of (2pi/a 2pi/b 2pi/c).
* All q components will be rescaled into [0 1).
* ---------------------------------------------------------------------------- */
void Interpolate::trilinear(double *qin, doublecomplex *DMq)
{
// rescale q[i] into [0 1)
double q[3];
for (int i = 0; i < 3; ++i) q[i] = qin[i];
for (int i = 0; i < 3; ++i){
while (q[i] < 0.) q[i] += 1.;
while (q[i] >= 1.) q[i] -= 1.;
}
// find the index of the eight vertice
int ix, iy, iz, ixp, iyp, izp;
double x, y, z;
q[0] *= double(Nx);
q[1] *= double(Ny);
q[2] *= double(Nz);
ix = int(q[0])%Nx;
iy = int(q[1])%Ny;
iz = int(q[2])%Nz;
ixp = (ix+1)%Nx;
iyp = (iy+1)%Ny;
izp = (iz+1)%Nz;
x = q[0] - double(ix);
y = q[1] - double(iy);
z = q[2] - double(iz);
//--------------------------------------
vidx[0] = ((ix*Ny)+iy)*Nz + iz;
vidx[1] = ((ixp*Ny)+iy)*Nz + iz;
vidx[2] = ((ix*Ny)+iyp)*Nz + iz;
vidx[3] = ((ix*Ny)+iy)*Nz + izp;
vidx[4] = ((ixp*Ny)+iy)*Nz + izp;
vidx[5] = ((ix*Ny)+iyp)*Nz + izp;
vidx[6] = ((ixp*Ny)+iyp)*Nz + iz;
vidx[7] = ((ixp*Ny)+iyp)*Nz + izp;
for (int i = 0; i < 8; ++i) if (vidx[i] == 0) UseGamma = 1;
double fac[8];
fac[0] = (1.-x)*(1.-y)*(1.-z);
fac[1] = x*(1.-y)*(1.-z);
fac[2] = (1.-x)*y*(1.-z);
fac[3] = (1.-x)*(1.-y)*z;
fac[4] = x*(1.-y)*z;
fac[5] = (1.-x)*y*z;
fac[6] = x*y*(1.-z);
fac[7] = x*y*z;
// now to do the interpolation
for (int idim = 0; idim < ndim; ++idim){
DMq[idim].r = 0.;
DMq[idim].i = 0.;
for (int i = 0; i < 8; ++i){
DMq[idim].r += data[vidx[i]][idim].r*fac[i];
DMq[idim].i += data[vidx[i]][idim].i*fac[i];
}
}
return;
}
/* ----------------------------------------------------------------------------
* To invoke the interpolation
* ---------------------------------------------------------------------------- */
void Interpolate::execute(double *qin, doublecomplex *DMq)
{
UseGamma = 0;
if (which == 1) // 1: tricubic
tricubic(qin, DMq);
else // otherwise: trilinear
trilinear(qin, DMq);
return;
}
/* ----------------------------------------------------------------------------
* Public method, to set/reset the interpolation method
* ---------------------------------------------------------------------------- */
void Interpolate::set_method()
{
char str[MAXLINE];
int im = 1;
printf("\n");for(int i=0; i<80; i++) printf("=");
printf("\nWhich interpolation method would you like to use?\n");
printf(" 1. Tricubic;\n 2. Trilinear;\n");
printf("Your choice [1]: ");
fgets(str,MAXLINE,stdin);
char *ptr = strtok(str," \t\n\r\f");
if (ptr) im = atoi(ptr);
which =2-im%2;
printf("Your selection: %d\n", which);
for(int i=0; i<80; i++) printf("="); printf("\n\n");
if (which == 1) tricubic_init();
return;
}
/* ----------------------------------------------------------------------------
* Public method, to reset gamma point data; in this case, the gamma point data
* will be meaningless. should only be called once.
* ---------------------------------------------------------------------------- */
void Interpolate::reset_gamma()
{
if (flag_reset_gamma) return;
flag_reset_gamma = 1;
int p1 = 1%Nx, p2 = 2%Nx;
int m1 = (Nx-1), m2 = (Nx-2+Nx)%Nx;
int ip1 = p1*Ny*Nz, ip2 = p2*Ny*Nz;
int im1 = m1*Ny*Nz, im2 = m2*Ny*Nz;
double const one6 = -1./6., two3 = 2./3.;
for (int idim=0; idim<ndim; idim++){
data[0][idim].i = 0.;
data[0][idim].r = (data[im2][idim].r + data[ip2][idim].r) * one6
+ (data[im1][idim].r + data[ip1][idim].r) * two3;
}
return;
}
/* ---------------------------------------------------------------------------- */
c4science · Help