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compute_centro_atom.html
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Wed, Nov 27, 05:39
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rLAMMPS lammps
compute_centro_atom.html
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<HTML>
<CENTER><A
HREF =
"http://lammps.sandia.gov"
>
LAMMPS WWW Site
</A>
-
<A
HREF =
"Manual.html"
>
LAMMPS Documentation
</A>
-
<A
HREF =
"Section_commands.html#comm"
>
LAMMPS Commands
</A>
</CENTER>
<HR>
<H3>
compute centro/atom command
</H3>
<P><B>
Syntax:
</B>
</P>
<PRE>
compute ID group-ID centro/atom
</PRE>
<UL><LI>
ID, group-ID are documented in
<A
HREF =
"compute.html"
>
compute
</A>
command
<LI>
centro/atom = style name of this compute command
</UL>
<P><B>
Examples:
</B>
</P>
<PRE>
compute 1 all centro/atom
</PRE>
<P><B>
Description:
</B>
</P>
<P>
Define a computation that calculates the centro-symmetry parameter for
each atom in a group. This can be output via the
<A
HREF =
"dump.html"
>
dump
custom
</A>
command.
</P>
<P>
This parameter is computed using the following formula from
<A
HREF =
"#Kelchner"
>
(Kelchner)
</A>
</P>
<CENTER><IMG
SRC =
"Eqs/centro_symmetry.jpg"
>
</CENTER>
<P>
where the 12 nearest neighbors are found and Ri and Ri+6 are the
vectors from the central atom to the opposite pair of nearest
neighbors. In solid state systems this is a useful measure of the
local lattice disorder around an atom and can be used to characterize
whether the atom is part of a perfect lattice, a local defect (e.g. a
dislocation or stacking fault), or at a surface.
</P>
<P>
The neighbor list needed to compute this quantity is constructed each
time the calculation is performed (i.e. each time a snapshot of atoms
is dumped). Thus it can be inefficient to compute/dump this quantity
too frequently or to have multiple compute/dump commands, each of a
<I>
centro/atom
</I>
style.
</P>
<P><B>
Restrictions:
</B>
none
</P>
<P><B>
Related commands:
</B>
none
</P>
<P><B>
Default:
</B>
none
</P>
<HR>
<A
NAME =
"Kelchner"
></A>
<P><B>
(Kelchner)
</B>
Kelchner, Plimpton, Hamilton, Phys Rev B, 58, 11085 (1998).
</P>
</HTML>
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