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<li class="toctree-l1"><a class="reference internal" href="Section_intro.html">1. Introduction</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_start.html">2. Getting Started</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_commands.html">3. Commands</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_packages.html">4. Packages</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_accelerate.html">5. Accelerating LAMMPS performance</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_howto.html">6. How-to discussions</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_example.html">7. Example problems</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_perf.html">8. Performance &amp; scalability</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_tools.html">9. Additional tools</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_modify.html">10. Modifying &amp; extending LAMMPS</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_python.html">11. Python interface to LAMMPS</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_errors.html">12. Errors</a></li>
<li class="toctree-l1"><a class="reference internal" href="Section_history.html">13. Future and history</a></li>
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<p class="caption"><span class="caption-text">Index</span></p>
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<li class="toctree-l1"><a class="reference internal" href="tutorials.html">Tutorials</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Commands</a><ul>
<li class="toctree-l2"><a class="reference internal" href="angle_coeff.html">angle_coeff command</a></li>
<li class="toctree-l2"><a class="reference internal" href="angle_style.html">angle_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="atom_modify.html">atom_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="atom_style.html">atom_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="balance.html">balance command</a></li>
<li class="toctree-l2"><a class="reference internal" href="bond_coeff.html">bond_coeff command</a></li>
<li class="toctree-l2"><a class="reference internal" href="bond_style.html">bond_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="bond_write.html">bond_write command</a></li>
<li class="toctree-l2"><a class="reference internal" href="boundary.html">boundary command</a></li>
<li class="toctree-l2"><a class="reference internal" href="box.html">box command</a></li>
<li class="toctree-l2"><a class="reference internal" href="change_box.html">change_box command</a></li>
<li class="toctree-l2"><a class="reference internal" href="clear.html">clear command</a></li>
<li class="toctree-l2"><a class="reference internal" href="comm_modify.html">comm_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="comm_style.html">comm_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="compute.html">compute command</a></li>
<li class="toctree-l2"><a class="reference internal" href="compute_modify.html">compute_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="create_atoms.html">create_atoms command</a></li>
<li class="toctree-l2"><a class="reference internal" href="create_bonds.html">create_bonds command</a></li>
<li class="toctree-l2"><a class="reference internal" href="create_box.html">create_box command</a></li>
<li class="toctree-l2"><a class="reference internal" href="delete_atoms.html">delete_atoms command</a></li>
<li class="toctree-l2"><a class="reference internal" href="delete_bonds.html">delete_bonds command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dielectric.html">dielectric command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dihedral_coeff.html">dihedral_coeff command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dihedral_style.html">dihedral_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dimension.html">dimension command</a></li>
<li class="toctree-l2"><a class="reference internal" href="displace_atoms.html">displace_atoms command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump.html">dump command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump.html#dump-custom-vtk-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">custom/vtk</span></code> command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump.html#dump-h5md-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">h5md</span></code> command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump.html#dump-image-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">image</span></code> command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump.html#dump-movie-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">movie</span></code> command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump.html#dump-molfile-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">molfile</span></code> command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump_custom_vtk.html">dump custom/vtk command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump_h5md.html">dump h5md command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump_image.html">dump image command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump_image.html#dump-movie-command">dump movie command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump_modify.html">dump_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="dump_molfile.html">dump molfile command</a></li>
<li class="toctree-l2"><a class="reference internal" href="echo.html">echo command</a></li>
<li class="toctree-l2"><a class="reference internal" href="fix.html">fix command</a></li>
<li class="toctree-l2"><a class="reference internal" href="fix_modify.html">fix_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="group.html">group command</a></li>
<li class="toctree-l2"><a class="reference internal" href="group2ndx.html">group2ndx command</a></li>
<li class="toctree-l2"><a class="reference internal" href="group2ndx.html#ndx2group-command">ndx2group command</a></li>
<li class="toctree-l2"><a class="reference internal" href="if.html">if command</a></li>
<li class="toctree-l2"><a class="reference internal" href="improper_coeff.html">improper_coeff command</a></li>
<li class="toctree-l2"><a class="reference internal" href="improper_style.html">improper_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="include.html">include command</a></li>
<li class="toctree-l2"><a class="reference internal" href="info.html">info command</a></li>
<li class="toctree-l2"><a class="reference internal" href="jump.html">jump command</a></li>
<li class="toctree-l2"><a class="reference internal" href="kspace_modify.html">kspace_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="kspace_style.html">kspace_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="label.html">label command</a></li>
<li class="toctree-l2"><a class="reference internal" href="lattice.html">lattice command</a></li>
<li class="toctree-l2"><a class="reference internal" href="log.html">log command</a></li>
<li class="toctree-l2"><a class="reference internal" href="mass.html">mass command</a></li>
<li class="toctree-l2"><a class="reference internal" href="min_modify.html">min_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="min_style.html">min_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="minimize.html">minimize command</a></li>
<li class="toctree-l2"><a class="reference internal" href="molecule.html">molecule command</a></li>
<li class="toctree-l2"><a class="reference internal" href="neb.html">neb command</a></li>
<li class="toctree-l2"><a class="reference internal" href="neigh_modify.html">neigh_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="neighbor.html">neighbor command</a></li>
<li class="toctree-l2"><a class="reference internal" href="newton.html">newton command</a></li>
<li class="toctree-l2"><a class="reference internal" href="next.html">next command</a></li>
<li class="toctree-l2"><a class="reference internal" href="package.html">package command</a></li>
<li class="toctree-l2"><a class="reference internal" href="pair_coeff.html">pair_coeff command</a></li>
<li class="toctree-l2"><a class="reference internal" href="pair_modify.html">pair_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="pair_style.html">pair_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="pair_write.html">pair_write command</a></li>
<li class="toctree-l2"><a class="reference internal" href="partition.html">partition command</a></li>
<li class="toctree-l2"><a class="reference internal" href="prd.html">prd command</a></li>
<li class="toctree-l2"><a class="reference internal" href="print.html">print command</a></li>
<li class="toctree-l2"><a class="reference internal" href="processors.html">processors command</a></li>
<li class="toctree-l2"><a class="reference internal" href="python.html">python command</a></li>
<li class="toctree-l2"><a class="reference internal" href="quit.html">quit command</a></li>
<li class="toctree-l2"><a class="reference internal" href="read_data.html">read_data command</a></li>
<li class="toctree-l2"><a class="reference internal" href="read_dump.html">read_dump command</a></li>
<li class="toctree-l2"><a class="reference internal" href="read_restart.html">read_restart command</a></li>
<li class="toctree-l2"><a class="reference internal" href="region.html">region command</a></li>
<li class="toctree-l2"><a class="reference internal" href="replicate.html">replicate command</a></li>
<li class="toctree-l2"><a class="reference internal" href="rerun.html">rerun command</a></li>
<li class="toctree-l2"><a class="reference internal" href="reset_timestep.html">reset_timestep command</a></li>
<li class="toctree-l2"><a class="reference internal" href="restart.html">restart command</a></li>
<li class="toctree-l2"><a class="reference internal" href="run.html">run command</a></li>
<li class="toctree-l2"><a class="reference internal" href="run_style.html">run_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="set.html">set command</a></li>
<li class="toctree-l2"><a class="reference internal" href="shell.html">shell command</a></li>
<li class="toctree-l2"><a class="reference internal" href="special_bonds.html">special_bonds command</a></li>
<li class="toctree-l2"><a class="reference internal" href="suffix.html">suffix command</a></li>
<li class="toctree-l2"><a class="reference internal" href="tad.html">tad command</a></li>
<li class="toctree-l2"><a class="reference internal" href="temper.html">temper command</a></li>
<li class="toctree-l2"><a class="reference internal" href="thermo.html">thermo command</a></li>
<li class="toctree-l2"><a class="reference internal" href="thermo_modify.html">thermo_modify command</a></li>
<li class="toctree-l2"><a class="reference internal" href="thermo_style.html">thermo_style command</a></li>
<li class="toctree-l2"><a class="reference internal" href="timer.html">timer command</a></li>
<li class="toctree-l2"><a class="reference internal" href="timestep.html">timestep command</a></li>
<li class="toctree-l2"><a class="reference internal" href="uncompute.html">uncompute command</a></li>
<li class="toctree-l2"><a class="reference internal" href="undump.html">undump command</a></li>
<li class="toctree-l2"><a class="reference internal" href="unfix.html">unfix command</a></li>
<li class="toctree-l2"><a class="reference internal" href="units.html">units command</a></li>
<li class="toctree-l2"><a class="reference internal" href="variable.html">variable command</a></li>
<li class="toctree-l2"><a class="reference internal" href="velocity.html">velocity command</a></li>
<li class="toctree-l2"><a class="reference internal" href="write_coeff.html">write_coeff command</a></li>
<li class="toctree-l2"><a class="reference internal" href="write_data.html">write_data command</a></li>
<li class="toctree-l2"><a class="reference internal" href="write_dump.html">write_dump command</a></li>
<li class="toctree-l2"><a class="reference internal" href="write_restart.html">write_restart command</a></li>
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<li class="toctree-l1"><a class="reference internal" href="fixes.html">Fixes</a></li>
<li class="toctree-l1"><a class="reference internal" href="computes.html">Computes</a></li>
<li class="toctree-l1"><a class="reference internal" href="pairs.html">Pair Styles</a></li>
<li class="toctree-l1"><a class="reference internal" href="bonds.html">Bond Styles</a></li>
<li class="toctree-l1"><a class="reference internal" href="angles.html">Angle Styles</a></li>
<li class="toctree-l1"><a class="reference internal" href="dihedrals.html">Dihedral Styles</a></li>
<li class="toctree-l1"><a class="reference internal" href="impropers.html">Improper Styles</a></li>
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<div class="section" id="commands">
<h1>Commands</h1>
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="angle_coeff.html">angle_coeff command</a></li>
<li class="toctree-l1"><a class="reference internal" href="angle_style.html">angle_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="atom_modify.html">atom_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="atom_style.html">atom_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="balance.html">balance command</a></li>
<li class="toctree-l1"><a class="reference internal" href="bond_coeff.html">bond_coeff command</a></li>
<li class="toctree-l1"><a class="reference internal" href="bond_style.html">bond_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="bond_write.html">bond_write command</a></li>
<li class="toctree-l1"><a class="reference internal" href="boundary.html">boundary command</a></li>
<li class="toctree-l1"><a class="reference internal" href="box.html">box command</a></li>
<li class="toctree-l1"><a class="reference internal" href="change_box.html">change_box command</a></li>
<li class="toctree-l1"><a class="reference internal" href="clear.html">clear command</a></li>
<li class="toctree-l1"><a class="reference internal" href="comm_modify.html">comm_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="comm_style.html">comm_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="compute.html">compute command</a></li>
<li class="toctree-l1"><a class="reference internal" href="compute_modify.html">compute_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="create_atoms.html">create_atoms command</a></li>
<li class="toctree-l1"><a class="reference internal" href="create_bonds.html">create_bonds command</a></li>
<li class="toctree-l1"><a class="reference internal" href="create_box.html">create_box command</a></li>
<li class="toctree-l1"><a class="reference internal" href="delete_atoms.html">delete_atoms command</a></li>
<li class="toctree-l1"><a class="reference internal" href="delete_bonds.html">delete_bonds command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dielectric.html">dielectric command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dihedral_coeff.html">dihedral_coeff command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dihedral_style.html">dihedral_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dimension.html">dimension command</a></li>
<li class="toctree-l1"><a class="reference internal" href="displace_atoms.html">displace_atoms command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump.html">dump command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump.html#dump-custom-vtk-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">custom/vtk</span></code> command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump.html#dump-h5md-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">h5md</span></code> command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump.html#dump-image-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">image</span></code> command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump.html#dump-movie-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">movie</span></code> command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump.html#dump-molfile-command"><code class="docutils literal"><span class="pre">dump</span> <span class="pre">molfile</span></code> command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump_custom_vtk.html">dump custom/vtk command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump_h5md.html">dump h5md command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump_image.html">dump image command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump_image.html#dump-movie-command">dump movie command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump_modify.html">dump_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="dump_molfile.html">dump molfile command</a></li>
<li class="toctree-l1"><a class="reference internal" href="echo.html">echo command</a></li>
<li class="toctree-l1"><a class="reference internal" href="fix.html">fix command</a></li>
<li class="toctree-l1"><a class="reference internal" href="fix_modify.html">fix_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="group.html">group command</a></li>
<li class="toctree-l1"><a class="reference internal" href="group2ndx.html">group2ndx command</a></li>
<li class="toctree-l1"><a class="reference internal" href="group2ndx.html#ndx2group-command">ndx2group command</a></li>
<li class="toctree-l1"><a class="reference internal" href="if.html">if command</a></li>
<li class="toctree-l1"><a class="reference internal" href="improper_coeff.html">improper_coeff command</a></li>
<li class="toctree-l1"><a class="reference internal" href="improper_style.html">improper_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="include.html">include command</a></li>
<li class="toctree-l1"><a class="reference internal" href="info.html">info command</a></li>
<li class="toctree-l1"><a class="reference internal" href="jump.html">jump command</a></li>
<li class="toctree-l1"><a class="reference internal" href="kspace_modify.html">kspace_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="kspace_style.html">kspace_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="label.html">label command</a></li>
<li class="toctree-l1"><a class="reference internal" href="lattice.html">lattice command</a></li>
<li class="toctree-l1"><a class="reference internal" href="log.html">log command</a></li>
<li class="toctree-l1"><a class="reference internal" href="mass.html">mass command</a></li>
<li class="toctree-l1"><a class="reference internal" href="min_modify.html">min_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="min_style.html">min_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="minimize.html">minimize command</a></li>
<li class="toctree-l1"><a class="reference internal" href="molecule.html">molecule command</a></li>
<li class="toctree-l1"><a class="reference internal" href="neb.html">neb command</a></li>
<li class="toctree-l1"><a class="reference internal" href="neigh_modify.html">neigh_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="neighbor.html">neighbor command</a></li>
<li class="toctree-l1"><a class="reference internal" href="newton.html">newton command</a></li>
<li class="toctree-l1"><a class="reference internal" href="next.html">next command</a></li>
<li class="toctree-l1"><a class="reference internal" href="package.html">package command</a></li>
<li class="toctree-l1"><a class="reference internal" href="pair_coeff.html">pair_coeff command</a></li>
<li class="toctree-l1"><a class="reference internal" href="pair_modify.html">pair_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="pair_style.html">pair_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="pair_write.html">pair_write command</a></li>
<li class="toctree-l1"><a class="reference internal" href="partition.html">partition command</a></li>
<li class="toctree-l1"><a class="reference internal" href="prd.html">prd command</a></li>
<li class="toctree-l1"><a class="reference internal" href="print.html">print command</a></li>
<li class="toctree-l1"><a class="reference internal" href="processors.html">processors command</a></li>
<li class="toctree-l1"><a class="reference internal" href="python.html">python command</a></li>
<li class="toctree-l1"><a class="reference internal" href="quit.html">quit command</a></li>
<li class="toctree-l1"><a class="reference internal" href="read_data.html">read_data command</a></li>
<li class="toctree-l1"><a class="reference internal" href="read_dump.html">read_dump command</a></li>
<li class="toctree-l1"><a class="reference internal" href="read_restart.html">read_restart command</a></li>
<li class="toctree-l1"><a class="reference internal" href="region.html">region command</a></li>
<li class="toctree-l1"><a class="reference internal" href="replicate.html">replicate command</a></li>
<li class="toctree-l1"><a class="reference internal" href="rerun.html">rerun command</a></li>
<li class="toctree-l1"><a class="reference internal" href="reset_timestep.html">reset_timestep command</a></li>
<li class="toctree-l1"><a class="reference internal" href="restart.html">restart command</a></li>
<li class="toctree-l1"><a class="reference internal" href="run.html">run command</a></li>
<li class="toctree-l1"><a class="reference internal" href="run_style.html">run_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="set.html">set command</a></li>
<li class="toctree-l1"><a class="reference internal" href="shell.html">shell command</a></li>
<li class="toctree-l1"><a class="reference internal" href="special_bonds.html">special_bonds command</a></li>
<li class="toctree-l1"><a class="reference internal" href="suffix.html">suffix command</a></li>
<li class="toctree-l1"><a class="reference internal" href="tad.html">tad command</a></li>
<li class="toctree-l1"><a class="reference internal" href="temper.html">temper command</a></li>
<li class="toctree-l1"><a class="reference internal" href="thermo.html">thermo command</a></li>
<li class="toctree-l1"><a class="reference internal" href="thermo_modify.html">thermo_modify command</a></li>
<li class="toctree-l1"><a class="reference internal" href="thermo_style.html">thermo_style command</a></li>
<li class="toctree-l1"><a class="reference internal" href="timer.html">timer command</a></li>
<li class="toctree-l1"><a class="reference internal" href="timestep.html">timestep command</a></li>
<li class="toctree-l1"><a class="reference internal" href="uncompute.html">uncompute command</a></li>
<li class="toctree-l1"><a class="reference internal" href="undump.html">undump command</a></li>
<li class="toctree-l1"><a class="reference internal" href="unfix.html">unfix command</a></li>
<li class="toctree-l1"><a class="reference internal" href="units.html">units command</a></li>
<li class="toctree-l1"><a class="reference internal" href="variable.html">variable command</a></li>
<li class="toctree-l1"><a class="reference internal" href="velocity.html">velocity command</a></li>
<li class="toctree-l1"><a class="reference internal" href="write_coeff.html">write_coeff command</a></li>
<li class="toctree-l1"><a class="reference internal" href="write_data.html">write_data command</a></li>
<li class="toctree-l1"><a class="reference internal" href="write_dump.html">write_dump command</a></li>
<li class="toctree-l1"><a class="reference internal" href="write_restart.html">write_restart command</a></li>
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