LAMMPS ACCELERATOR LIBRARY
--------------------------------
   
     W. Michael Brown (ORNL)
      Trung Dac Nguyen (ORNL)
        Peng Wang (NVIDIA)
     Axel Kohlmeyer (Temple)
       Steve Plimpton (SNL)
      Inderaj Bains (NVIDIA)

This directory has source files to build a library that LAMMPS links against when using the GPU package.

This library must be built with a C++ compiler, before LAMMPS is built, so LAMMPS can link against it.

Build the library using one of the provided Makefile.* files or create your own, specific to your compiler and system. For example:

make -f Makefile.linux

When you are done building this library, two files should exist in this directory:

libgpu.a the library LAMMPS will link against Makefile.lammps settings the LAMMPS Makefile will import

Makefile.lammps is created by the make command, by copying one of the Makefile.lammps.* files. See the EXTRAMAKE setting at the top of the Makefile.* files.

Makefile.lammps has settings for 3 variables:

user-gpu_SYSINC = leave blank for this package user-gpu_SYSLIB = CUDA libraries needed by this package user-gpu_SYSPATH = path(s) to where those libraries are

Because you have the CUDA compilers on your system, you should have the needed libraries. If the CUDA developement tools were installed in the standard manner, the settings in the Makefile.lammps.standard file should work.

        GENERAL NOTES
--------------------------------

This library, libgpu.a, provides routines for GPU acceleration of certain LAMMPS styles and neighbor list builds. Compilation of this library requires installing the CUDA GPU driver and CUDA toolkit for your operating system. Installation of the CUDA SDK is not necessary. In addition to the LAMMPS library, the binary nvc_get_devices will also be built. This can be used to query the names and properties of GPU devices on your system. A Makefile for OpenCL compilation is provided, but support for OpenCL use is not currently provided by the developers. Details of the implementation are provided in:

Brown, W.M., Wang, P. Plimpton, S.J., Tharrington, A.N. Implementing Molecular Dynamics on Hybrid High Performance Computers - Short Range Forces. Computer Physics Communications. 2011. 182: p. 898-911.

and

Brown, W.M., Kohlmeyer, A. Plimpton, S.J., Tharrington, A.N. Implementing Molecular Dynamics on Hybrid High Performance Computers - Particle-Particle Particle-Mesh. Computer Physics Communications. 2012. 183: p. 449-459.

and

Brown, W.M., Masako, Y. Implementing Molecular Dynamics on Hybrid High Performance Computers - Three-Body Potentials. Computer Physics Communications.

2013. 184: p. 2785–2793.

Current styles supporting GPU acceleration:

 1  beck
 2  born/coul/long
 3  born/coul/wolf
 4  born
 5  buck/coul/cut
 6  buck/coul/long
 7  buck
 8  colloid
 9  coul/dsf
10  coul/long
11  eam/alloy
12  eam/fs
13  eam
14  gauss
15  gayberne
16  lj96/cut
17  lj/charmm/coul/long
18  lj/class2/coul/long
19  lj/class2
20  lj/cut/coul/cut
21  lj/cut/coul/debye
22  lj/cut/coul/dsf
23  lj/cut/coul/long
24  lj/cut/coul/msm
25  lj/cut/dipole/cut
26  lj/cut
27  lj/expand
28  lj/gromacs
29  lj/sdk/coul/long
30  lj/sdk
31  lj/sf/dipole/sf
32  mie/cut
33  morse
34  resquared
35  soft
36  sw
37  table
38  yukawa/colloid
39  yukawa
40  pppm


                 MULTIPLE LAMMPS PROCESSES
              --------------------------------

Multiple LAMMPS MPI processes can share GPUs on the system, but multiple GPUs cannot be utilized by a single MPI process. In many cases, the best performance will be obtained by running as many MPI processes as CPU cores available with the condition that the number of MPI processes is an integer multiple of the number of GPUs being used. See the LAMMPS user manual for details on running with GPU acceleration.

  BUILDING AND PRECISION MODES
--------------------------------

To build, edit the CUDA_ARCH, CUDA_PRECISION, CUDA_HOME variables in one of the Makefiles. CUDA_ARCH should be set based on the compute capability of your GPU. This can be verified by running the nvc_get_devices executable after the build is complete. Additionally, the GPU package must be installed and compiled for LAMMPS. This may require editing the gpu_SYSPATH variable in the LAMMPS makefile.

Please note that the GPU library accesses the CUDA driver library directly, so it needs to be linked not only to the CUDA runtime library (libcudart.so) that ships with the CUDA toolkit, but also with the CUDA driver library (libcuda.so) that ships with the Nvidia driver. If you are compiling LAMMPS on the head node of a GPU cluster, this library may not be installed, so you may need to copy it over from one of the compute nodes (best into this directory).

The gpu library supports 3 precision modes as determined by the CUDA_PRECISION variable:

CUDA_PREC = -D_SINGLE_SINGLE  # Single precision for all calculations
CUDA_PREC = -D_DOUBLE_DOUBLE  # Double precision for all calculations
CUDA_PREC = -D_SINGLE_DOUBLE  # Accumulation of forces, etc. in double

    EXAMPLE BUILD PROCESS
--------------------------------

cd ~/lammps/lib/gpu emacs Makefile.linux make -f Makefile.linux ./nvc_get_devices cd ../../src emacs ./MAKE/Makefile.linux make yes-asphere make yes-kspace make yes-gpu make linux