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rLAMMPS lammps
pppm_kokkos.cpp
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/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
http://lammps.sandia.gov, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
/* ----------------------------------------------------------------------
Contributing author: Stan Moore (SNL)
------------------------------------------------------------------------- */
#include <mpi.h>
#include <string.h>
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include "pppm_kokkos.h"
#include "atom_kokkos.h"
#include "comm.h"
#include "gridcomm_kokkos.h"
#include "neighbor.h"
#include "force.h"
#include "pair.h"
#include "bond.h"
#include "angle.h"
#include "domain.h"
#include "fft3d_wrap.h"
#include "remap_wrap.h"
#include "memory.h"
#include "error.h"
#include "atom_masks.h"
#include "math_const.h"
#include "math_special_kokkos.h"
using namespace LAMMPS_NS;
using namespace MathConst;
using namespace MathSpecialKokkos;
#define MAXORDER 7
#define OFFSET 16384
#define LARGE 10000.0
#define SMALL 0.00001
#define EPS_HOC 1.0e-7
enum{REVERSE_RHO};
enum{FORWARD_IK,FORWARD_IK_PERATOM};
#ifdef FFT_SINGLE
#define ZEROF 0.0f
#define ONEF 1.0f
#else
#define ZEROF 0.0
#define ONEF 1.0
#endif
/* ---------------------------------------------------------------------- */
template<class DeviceType>
PPPMKokkos<DeviceType>::PPPMKokkos(LAMMPS *lmp, int narg, char **arg) : PPPM(lmp, narg, arg)
{
if (narg < 1) error->all(FLERR,"Illegal kspace_style pppm command");
atomKK = (AtomKokkos *) atom;
execution_space = ExecutionSpaceFromDevice<DeviceType>::space;
datamask_read = X_MASK | F_MASK | TYPE_MASK | Q_MASK;
datamask_modify = F_MASK;
pppmflag = 1;
group_group_enable = 0;
triclinic_support = 0;
accuracy_relative = fabs(force->numeric(FLERR,arg[0]));
nfactors = 3;
//factors = new int[nfactors];
factors[0] = 2;
factors[1] = 3;
factors[2] = 5;
MPI_Comm_rank(world,&me);
MPI_Comm_size(world,&nprocs);
//density_brick = d_vdx_brick = d_vdy_brick = d_vdz_brick = NULL;
//d_density_fft = NULL;
//d_u_brick = NULL;
//d_v0_brick = d_v1_brick = d_v2_brick = d_v3_brick = d_v4_brick = d_v5_brick = NULL;
//greensfn = NULL;
//d_work1 = d_work2 = NULL;
//vg = NULL;
//d_fkx = d_fky = d_fkz = NULL;
//gf_b = NULL;
//rho1d = rho_coeff = drho1d = drho_coeff = NULL;
fft1 = fft2 = NULL;
remap = NULL;
cg = NULL;
cg_peratom = NULL;
nmax = 0;
//part2grid = NULL;
peratom_allocate_flag = 0;
// define acons coefficients for estimation of kspace errors
// see JCP 109, pg 7698 for derivation of coefficients
// higher order coefficients may be computed if needed
acons = typename Kokkos::DualView<F_FLOAT[8][7],Kokkos::LayoutRight,LMPDeviceType>::t_host("pppm:acons");
acons(1,0) = 2.0 / 3.0;
acons(2,0) = 1.0 / 50.0;
acons(2,1) = 5.0 / 294.0;
acons(3,0) = 1.0 / 588.0;
acons(3,1) = 7.0 / 1440.0;
acons(3,2) = 21.0 / 3872.0;
acons(4,0) = 1.0 / 4320.0;
acons(4,1) = 3.0 / 1936.0;
acons(4,2) = 7601.0 / 2271360.0;
acons(4,3) = 143.0 / 28800.0;
acons(5,0) = 1.0 / 23232.0;
acons(5,1) = 7601.0 / 13628160.0;
acons(5,2) = 143.0 / 69120.0;
acons(5,3) = 517231.0 / 106536960.0;
acons(5,4) = 106640677.0 / 11737571328.0;
acons(6,0) = 691.0 / 68140800.0;
acons(6,1) = 13.0 / 57600.0;
acons(6,2) = 47021.0 / 35512320.0;
acons(6,3) = 9694607.0 / 2095994880.0;
acons(6,4) = 733191589.0 / 59609088000.0;
acons(6,5) = 326190917.0 / 11700633600.0;
acons(7,0) = 1.0 / 345600.0;
acons(7,1) = 3617.0 / 35512320.0;
acons(7,2) = 745739.0 / 838397952.0;
acons(7,3) = 56399353.0 / 12773376000.0;
acons(7,4) = 25091609.0 / 1560084480.0;
acons(7,5) = 1755948832039.0 / 36229939200000.0;
acons(7,6) = 4887769399.0 / 37838389248.0;
k_flag = DAT::tdual_int_scalar("PPPM:flag");
}
/* ----------------------------------------------------------------------
free all memory
------------------------------------------------------------------------- */
template<class DeviceType>
PPPMKokkos<DeviceType>::~PPPMKokkos()
{
if (copymode) return;
//delete [] factors;
deallocate();
if (peratom_allocate_flag) deallocate_peratom();
//memory->destroy(part2grid);
//memory->destroy(acons);
memory->destroy_kokkos(k_eatom,eatom);
memory->destroy_kokkos(k_vatom,vatom);
eatom = NULL;
vatom = NULL;
}
/* ----------------------------------------------------------------------
called once before run
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::init()
{
if (me == 0) {
if (screen) fprintf(screen,"PPPM initialization ...\n");
if (logfile) fprintf(logfile,"PPPM initialization ...\n");
}
// error check
if (differentiation_flag == 1)
error->all(FLERR,"Cannot (yet) use PPPM Kokkos with 'kspace_modify diff ad'");
triclinic_check();
if (domain->triclinic && slabflag)
error->all(FLERR,"Cannot (yet) use PPPM with triclinic box and "
"slab correction");
if (domain->dimension == 2) error->all(FLERR,
"Cannot use PPPM with 2d simulation");
if (comm->style != 0)
error->universe_all(FLERR,"PPPM can only currently be used with "
"comm_style brick");
if (!atomKK->q_flag) error->all(FLERR,"Kspace style requires atomKK attribute q");
if (slabflag == 0 && domain->nonperiodic > 0)
error->all(FLERR,"Cannot use nonperiodic boundaries with PPPM");
if (slabflag) {
if (domain->xperiodic != 1 || domain->yperiodic != 1 ||
domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1)
error->all(FLERR,"Incorrect boundaries with slab PPPM");
}
if (order < 2 || order > MAXORDER) {
char str[128];
sprintf(str,"PPPM order cannot be < 2 or > than %d",MAXORDER);
error->all(FLERR,str);
}
// extract short-range Coulombic cutoff from pair style
triclinic = domain->triclinic;
pair_check();
int itmp = 0;
double *p_cutoff = (double *) force->pair->extract("cut_coul",itmp);
if (p_cutoff == NULL)
error->all(FLERR,"KSpace style is incompatible with Pair style");
cutoff = *p_cutoff;
// if kspace is TIP4P, extract TIP4P params from pair style
// bond/angle are not yet init(), so insure equilibrium request is valid
qdist = 0.0;
if (tip4pflag)
error->all(FLERR,"Cannot (yet) use PPPM Kokkos TIP4P");
// compute qsum & qsqsum and warn if not charge-neutral
scale = 1.0;
qqrd2e = force->qqrd2e;
qsum_qsq();
natoms_original = atomKK->natoms;
// set accuracy (force units) from accuracy_relative or accuracy_absolute
if (accuracy_absolute >= 0.0) accuracy = accuracy_absolute;
else accuracy = accuracy_relative * two_charge_force;
// free all arrays previously allocated
deallocate();
if (peratom_allocate_flag) deallocate_peratom();
// setup FFT grid resolution and g_ewald
// normally one iteration thru while loop is all that is required
// if grid stencil does not extend beyond neighbor proc
// or overlap is allowed, then done
// else reduce order and try again
int (*procneigh)[2] = comm->procneigh;
GridCommKokkos<DeviceType> *cgtmp = NULL;
int iteration = 0;
while (order >= minorder) {
if (iteration && me == 0)
error->warning(FLERR,"Reducing PPPM order b/c stencil extends "
"beyond nearest neighbor processor");
set_grid_global();
set_grid_local();
if (overlap_allowed) break;
cgtmp = new GridCommKokkos<DeviceType>(lmp,world,1,1,
nxlo_in,nxhi_in,nylo_in,nyhi_in,nzlo_in,nzhi_in,
nxlo_out,nxhi_out,nylo_out,nyhi_out,nzlo_out,nzhi_out,
procneigh[0][0],procneigh[0][1],procneigh[1][0],
procneigh[1][1],procneigh[2][0],procneigh[2][1]);
cgtmp->ghost_notify();
if (!cgtmp->ghost_overlap()) break;
delete cgtmp;
order--;
iteration++;
}
if (order < minorder) error->all(FLERR,"PPPM order < minimum allowed order");
if (!overlap_allowed && cgtmp->ghost_overlap())
error->all(FLERR,"PPPM grid stencil extends "
"beyond nearest neighbor processor");
if (cgtmp) delete cgtmp;
// adjust g_ewald
if (!gewaldflag) adjust_gewald();
// calculate the final accuracy
double estimated_accuracy = final_accuracy();
// print stats
int ngrid_max,nfft_both_max;
MPI_Allreduce(&ngrid,&ngrid_max,1,MPI_INT,MPI_MAX,world);
MPI_Allreduce(&nfft_both,&nfft_both_max,1,MPI_INT,MPI_MAX,world);
if (me == 0) {
#ifdef FFT_SINGLE
const char fft_prec[] = "single";
#else
const char fft_prec[] = "double";
#endif
if (screen) {
fprintf(screen," G vector (1/distance) = %g\n",g_ewald);
fprintf(screen," grid = %d %d %d\n",nx_pppm,ny_pppm,nz_pppm);
fprintf(screen," stencil order = %d\n",order);
fprintf(screen," estimated absolute RMS force accuracy = %g\n",
estimated_accuracy);
fprintf(screen," estimated relative force accuracy = %g\n",
estimated_accuracy/two_charge_force);
fprintf(screen," using %s precision FFTs\n",fft_prec);
fprintf(screen," 3d grid and FFT values/proc = %d %d\n",
ngrid_max,nfft_both_max);
}
if (logfile) {
fprintf(logfile," G vector (1/distance) = %g\n",g_ewald);
fprintf(logfile," grid = %d %d %d\n",nx_pppm,ny_pppm,nz_pppm);
fprintf(logfile," stencil order = %d\n",order);
fprintf(logfile," estimated absolute RMS force accuracy = %g\n",
estimated_accuracy);
fprintf(logfile," estimated relative force accuracy = %g\n",
estimated_accuracy/two_charge_force);
fprintf(logfile," using %s precision FFTs\n",fft_prec);
fprintf(logfile," 3d grid and FFT values/proc = %d %d\n",
ngrid_max,nfft_both_max);
}
}
// allocate K-space dependent memory
// don't invoke allocate peratom(), will be allocated when needed
allocate();
cg->ghost_notify();
cg->setup();
// pre-compute Green's function denomiator expansion
// pre-compute 1d charge distribution coefficients
compute_gf_denom();
compute_rho_coeff();
k_rho_coeff.template modify<LMPHostType>();
k_rho_coeff.template sync<DeviceType>();
}
/* ----------------------------------------------------------------------
adjust PPPM coeffs, called initially and whenever volume has changed
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::setup()
{
if (triclinic) {
setup_triclinic();
return;
}
// perform some checks to avoid illegal boundaries with read_data
if (slabflag == 0 && domain->nonperiodic > 0)
error->all(FLERR,"Cannot use nonperiodic boundaries with PPPM");
if (slabflag) {
if (domain->xperiodic != 1 || domain->yperiodic != 1 ||
domain->boundary[2][0] != 1 || domain->boundary[2][1] != 1)
error->all(FLERR,"Incorrect boundaries with slab PPPM");
}
int i,j,k,n;
double *prd;
// volume-dependent factors
// adjust z dimension for 2d slab PPPM
// z dimension for 3d PPPM is zprd since slab_volfactor = 1.0
if (triclinic == 0) prd = domain->prd;
else prd = domain->prd_lamda;
double xprd = prd[0];
double yprd = prd[1];
double zprd = prd[2];
double zprd_slab = zprd*slab_volfactor;
volume = xprd * yprd * zprd_slab;
delxinv = nx_pppm/xprd;
delyinv = ny_pppm/yprd;
delzinv = nz_pppm/zprd_slab;
delvolinv = delxinv*delyinv*delzinv;
unitkx = (MY_2PI/xprd);
unitky = (MY_2PI/yprd);
unitkz = (MY_2PI/zprd_slab);
// d_fkx,d_fky,d_fkz for my FFT grid pts
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_setup1>(nxlo_fft,nxhi_fft+1),*this);
DeviceType::fence();
copymode = 0;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_setup2>(nylo_fft,nyhi_fft+1),*this);
DeviceType::fence();
copymode = 0;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_setup3>(nzlo_fft,nzhi_fft+1),*this);
DeviceType::fence();
copymode = 0;
// virial coefficients
double sqk,vterm;
// merge three outer loops into one for better threading
numz_fft = nzhi_fft-nzlo_fft + 1;
numy_fft = nyhi_fft-nylo_fft + 1;
numx_fft = nxhi_fft-nxlo_fft + 1;
const int inum_fft = numz_fft*numy_fft*numx_fft;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_setup4>(0,inum_fft),*this);
DeviceType::fence();
copymode = 0;
compute_gf_ik();
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_setup1, const int &i) const
{
double per = i - nx_pppm*(2*i/nx_pppm);
d_fkx[i-nxlo_fft] = unitkx*per;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_setup2, const int &i) const
{
double per = i - ny_pppm*(2*i/ny_pppm);
d_fky[i-nylo_fft] = unitky*per;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_setup3, const int &i) const
{
double per = i - nz_pppm*(2*i/nz_pppm);
d_fkz[i-nzlo_fft] = unitkz*per;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_setup4, const int &n) const
{
const int k = n/(numy_fft*numx_fft);
const int j = (n - k*numy_fft*numx_fft) / numx_fft;
const int i = n - k*numy_fft*numx_fft - j*numx_fft;
const double sqk = d_fkx[i]*d_fkx[i] + d_fky[j]*d_fky[j] + d_fkz[k]*d_fkz[k];
if (sqk == 0.0) {
d_vg(n,0) = 0.0;
d_vg(n,1) = 0.0;
d_vg(n,2) = 0.0;
d_vg(n,3) = 0.0;
d_vg(n,4) = 0.0;
d_vg(n,5) = 0.0;
} else {
const double vterm = -2.0 * (1.0/sqk + 0.25/(g_ewald*g_ewald));
d_vg(n,0) = 1.0 + vterm*d_fkx[i]*d_fkx[i];
d_vg(n,1) = 1.0 + vterm*d_fky[j]*d_fky[j];
d_vg(n,2) = 1.0 + vterm*d_fkz[k]*d_fkz[k];
d_vg(n,3) = vterm*d_fkx[i]*d_fky[j];
d_vg(n,4) = vterm*d_fkx[i]*d_fkz[k];
d_vg(n,5) = vterm*d_fky[j]*d_fkz[k];
}
}
/* ----------------------------------------------------------------------
adjust PPPM coeffs, called initially and whenever volume has changed
for a triclinic system
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::setup_triclinic()
{
// int i,j,k,n;
// double *prd;
//
// // volume-dependent factors
// // adjust z dimension for 2d slab PPPM
// // z dimension for 3d PPPM is zprd since slab_volfactor = 1.0
//
// prd = domain->prd;
//
// double xprd = prd[0];
// double yprd = prd[1];
// double zprd = prd[2];
// double zprd_slab = zprd*slab_volfactor;
// volume = xprd * yprd * zprd_slab;
//
// // use lamda (0-1) coordinates
//
// delxinv = nx_pppm;
// delyinv = ny_pppm;
// delzinv = nz_pppm;
// delvolinv = delxinv*delyinv*delzinv/volume;
//
// // d_fkx,d_fky,d_fkz for my FFT grid pts
//
// double per_i,per_j,per_k;
//
// n = 0;
// for (k = nzlo_fft; k <= nzhi_fft; k++) { // parallel_for
// per_k = k - nz_pppm*(2*k/nz_pppm);
// for (j = nylo_fft; j <= nyhi_fft; j++) {
// per_j = j - ny_pppm*(2*j/ny_pppm);
// for (i = nxlo_fft; i <= nxhi_fft; i++) {
// per_i = i - nx_pppm*(2*i/nx_pppm);
//
// double unitk_lamda[3];
// unitk_lamda[0] = 2.0*MY_PI*per_i;
// unitk_lamda[1] = 2.0*MY_PI*per_j;
// unitk_lamda[2] = 2.0*MY_PI*per_k;
// x2lamdaT(&unitk_lamda[0],&unitk_lamda[0]);
// d_fkx[n] = unitk_lamda[0];
// d_fky[n] = unitk_lamda[1];
// d_fkz[n] = unitk_lamda[2];
// n++;
// }
// }
// }
//
// // virial coefficients
//
// double sqk,vterm;
//
// for (n = 0; n < nfft; n++) { // parallel_for
// sqk = d_fkx[n]*d_fkx[n] + d_fky[n]*d_fky[n] + d_fkz[n]*d_fkz[n];
// if (sqk == 0.0) {
// d_vg(n,0) = 0.0;
// d_vg(n,1) = 0.0;
// d_vg(n,2) = 0.0;
// d_vg(n,3) = 0.0;
// d_vg(n,4) = 0.0;
// d_vg(n,5) = 0.0;
// } else {
// vterm = -2.0 * (1.0/sqk + 0.25/(g_ewald*g_ewald));
// d_vg(n,0) = 1.0 + vterm*d_fkx[n]*d_fkx[n];
// d_vg(n,1) = 1.0 + vterm*d_fky[n]*d_fky[n];
// d_vg(n,2) = 1.0 + vterm*d_fkz[n]*d_fkz[n];
// d_vg(n,3) = vterm*d_fkx[n]*d_fky[n];
// d_vg(n,4) = vterm*d_fkx[n]*d_fkz[n];
// d_vg(n,5) = vterm*d_fky[n]*d_fkz[n];
// }
// }
//
// compute_gf_ik_triclinic();
}
/* ----------------------------------------------------------------------
reset local grid arrays and communication stencils
called by fix balance b/c it changed sizes of processor sub-domains
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::setup_grid()
{
// free all arrays previously allocated
deallocate();
if (peratom_allocate_flag) deallocate_peratom();
// reset portion of global grid that each proc owns
set_grid_local();
// reallocate K-space dependent memory
// check if grid communication is now overlapping if not allowed
// don't invoke allocate peratom(), will be allocated when needed
allocate();
cg->ghost_notify();
if (overlap_allowed == 0 && cg->ghost_overlap())
error->all(FLERR,"PPPM grid stencil extends "
"beyond nearest neighbor processor");
cg->setup();
// pre-compute Green's function denomiator expansion
// pre-compute 1d charge distribution coefficients
compute_gf_denom();
compute_rho_coeff();
// pre-compute volume-dependent coeffs
setup();
}
/* ----------------------------------------------------------------------
compute the PPPM long-range force, energy, virial
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::compute(int eflag, int vflag)
{
int i,j;
// set energy/virial flags
// invoke allocate_peratom() if needed for first time
if (eflag || vflag) ev_setup(eflag,vflag);
else evflag = evflag_atom = eflag_global = vflag_global =
eflag_atom = vflag_atom = 0;
// reallocate per-atom arrays if necessary
if (eflag_atom) {
memory->destroy_kokkos(k_eatom,eatom);
memory->create_kokkos(k_eatom,eatom,maxeatom,"pair:eatom");
d_eatom = k_eatom.view<DeviceType>();
}
if (vflag_atom) {
memory->destroy_kokkos(k_vatom,vatom);
memory->create_kokkos(k_vatom,vatom,maxvatom,6,"pair:vatom");
d_vatom = k_vatom.view<DeviceType>();
}
if (evflag_atom && !peratom_allocate_flag) {
allocate_peratom();
cg_peratom->ghost_notify();
cg_peratom->setup();
}
x = atomKK->k_x.view<DeviceType>();
f = atomKK->k_f.view<DeviceType>();
q = atomKK->k_q.view<DeviceType>();
atomKK->sync(execution_space,datamask_read);
atomKK->modified(execution_space,datamask_modify);
//nlocal = atomKK->nlocal;
//nall = atomKK->nlocal + atomKK->nghost;
//newton_pair = force->newton_pair;
// if atomKK count has changed, update qsum and qsqsum
if (atomKK->natoms != natoms_original) {
qsum_qsq();
natoms_original = atomKK->natoms;
}
// return if there are no charges
if (qsqsum == 0.0) return;
// convert atoms from box to lamda coords
if (triclinic == 0) {
boxlo[0] = domain->boxlo[0];
boxlo[1] = domain->boxlo[1];
boxlo[2] = domain->boxlo[2];
} else {
boxlo[0] = domain->boxlo_lamda[0];
boxlo[1] = domain->boxlo_lamda[1];
boxlo[2] = domain->boxlo_lamda[2];
domain->x2lamda(atomKK->nlocal);
}
// extend size of per-atomKK arrays if necessary
if (atomKK->nmax > nmax) {
//memory->destroy(part2grid);
nmax = atomKK->nmax;
//memory->create(part2grid,nmax,3,"pppm:part2grid");
d_part2grid = typename AT::t_int_1d_3("pppm:part2grid",nmax);
d_rho1d = typename AT::t_FFT_SCALAR_2d_3("pppm:rho1d",nmax,order/2+order/2+1);
}
// find grid points for all my particles
// map my particle charge onto my local 3d density grid
particle_map();
make_rho();
// all procs communicate density values from their ghost cells
// to fully sum contribution in their 3d bricks
// remap from 3d decomposition to FFT decomposition
cg->reverse_comm(this,REVERSE_RHO);
brick2fft();
// compute potential gradient on my FFT grid and
// portion of e_long on this proc's FFT grid
// return gradients (electric fields) in 3d brick decomposition
// also performs per-atomKK calculations via poisson_peratom()
poisson();
// all procs communicate E-field values
// to fill ghost cells surrounding their 3d bricks
cg->forward_comm(this,FORWARD_IK);
// extra per-atomKK energy/virial communication
if (evflag_atom)
cg_peratom->forward_comm(this,FORWARD_IK_PERATOM);
// calculate the force on my particles
fieldforce();
// extra per-atomKK energy/virial communication
if (evflag_atom) fieldforce_peratom();
// sum global energy across procs and add in volume-dependent term
qscale = qqrd2e * scale;
if (eflag_global) {
double energy_all;
MPI_Allreduce(&energy,&energy_all,1,MPI_DOUBLE,MPI_SUM,world);
energy = energy_all;
energy *= 0.5*volume;
energy -= g_ewald*qsqsum/MY_PIS +
MY_PI2*qsum*qsum / (g_ewald*g_ewald*volume);
energy *= qscale;
}
// sum global virial across procs
if (vflag_global) {
double virial_all[6];
MPI_Allreduce(virial,virial_all,6,MPI_DOUBLE,MPI_SUM,world);
for (i = 0; i < 6; i++) virial[i] = 0.5*qscale*volume*virial_all[i];
}
// per-atomKK energy/virial
// energy includes self-energy correction
// notal accounts for TIP4P tallying d_eatom/vatom for ghost atoms
if (evflag_atom) {
int nlocal = atomKK->nlocal;
int ntotal = nlocal;
//if (tip4pflag) ntotal += atomKK->nghost;
if (eflag_atom) {
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_self1>(0,nlocal),*this);
DeviceType::fence();
copymode = 0;
//for (i = nlocal; i < ntotal; i++) d_eatom[i] *= 0.5*qscale;
}
if (vflag_atom) {
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_self2>(0,ntotal),*this);
DeviceType::fence();
copymode = 0;
}
}
// 2d slab correction
if (slabflag == 1) slabcorr();
// convert atoms back from lamda to box coords
if (triclinic) domain->lamda2x(atomKK->nlocal);
if (eflag_atom) {
k_eatom.template modify<DeviceType>();
k_eatom.template sync<LMPHostType>();
}
if (vflag_atom) {
k_vatom.template modify<DeviceType>();
k_vatom.template sync<LMPHostType>();
}
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_self1, const int &i) const
{
d_eatom[i] *= 0.5;
d_eatom[i] -= g_ewald*q[i]*q[i]/MY_PIS + MY_PI2*q[i]*qsum /
(g_ewald*g_ewald*volume);
d_eatom[i] *= qscale;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_self2, const int &i) const
{
for (int j = 0; j < 6; j++) d_vatom(i,j) *= 0.5*qscale;
}
/* ----------------------------------------------------------------------
allocate memory that depends on # of K-vectors and order
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::allocate()
{
d_density_brick = typename AT::t_FFT_SCALAR_3d("pppm:density_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
memory->create_kokkos(k_density_fft,density_fft,nfft_both,"pppm:d_density_fft");
d_density_fft = k_density_fft.view<DeviceType>();
d_greensfn = typename AT::t_float_1d("pppm:greensfn",nfft_both);
memory->create_kokkos(k_work1,work1,2*nfft_both,"pppm:work1");
memory->create_kokkos(k_work2,work2,2*nfft_both,"pppm:work2");
d_work1 = k_work1.view<DeviceType>();
d_work2 = k_work2.view<DeviceType>();
d_vg = typename AT::t_virial_array("pppm:vg",nfft_both);
if (triclinic == 0) {
d_fkx = typename AT::t_float_1d("pppm:d_fkx",nxhi_fft-nxlo_fft+1);
d_fky = typename AT::t_float_1d("pppm:d_fky",nyhi_fft-nylo_fft+1);
d_fkz = typename AT::t_float_1d("pppm:d_fkz",nzhi_fft-nzlo_fft+1);
} else {
d_fkx = typename AT::t_float_1d("pppm:d_fkx",nfft_both);
d_fky = typename AT::t_float_1d("pppm:d_fky",nfft_both);
d_fkz = typename AT::t_float_1d("pppm:d_fkz",nfft_both);
}
d_vdx_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_vdx_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
d_vdy_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_vdy_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
d_vdz_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_vdz_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
// summation coeffs
order_allocated = order;
k_gf_b = typename DAT::tdual_float_1d("pppm:gf_b",order);
d_gf_b = k_gf_b.view<DeviceType>();
d_rho1d = typename AT::t_FFT_SCALAR_2d_3("pppm:rho1d",nmax,order/2+order/2+1);
k_rho_coeff = DAT::tdual_FFT_SCALAR_2d("pppm:rho_coeff",order,order/2-(1-order)/2+1);
d_rho_coeff = k_rho_coeff.view<DeviceType>();
h_rho_coeff = k_rho_coeff.h_view;
// create 2 FFTs and a Remap
// 1st FFT keeps data in FFT decompostion
// 2nd FFT returns data in 3d brick decomposition
// remap takes data from 3d brick to FFT decomposition
int tmp;
fft1 = new FFT3d(lmp,world,nx_pppm,ny_pppm,nz_pppm,
nxlo_fft,nxhi_fft,nylo_fft,nyhi_fft,nzlo_fft,nzhi_fft,
nxlo_fft,nxhi_fft,nylo_fft,nyhi_fft,nzlo_fft,nzhi_fft,
0,0,&tmp,collective_flag);
fft2 = new FFT3d(lmp,world,nx_pppm,ny_pppm,nz_pppm,
nxlo_fft,nxhi_fft,nylo_fft,nyhi_fft,nzlo_fft,nzhi_fft,
nxlo_in,nxhi_in,nylo_in,nyhi_in,nzlo_in,nzhi_in,
0,0,&tmp,collective_flag);
remap = new Remap(lmp,world,
nxlo_in,nxhi_in,nylo_in,nyhi_in,nzlo_in,nzhi_in,
nxlo_fft,nxhi_fft,nylo_fft,nyhi_fft,nzlo_fft,nzhi_fft,
1,0,0,FFT_PRECISION,collective_flag);
// create ghost grid object for rho and electric field communication
int (*procneigh)[2] = comm->procneigh;
cg = new GridCommKokkos<DeviceType>(lmp,world,3,1,
nxlo_in,nxhi_in,nylo_in,nyhi_in,nzlo_in,nzhi_in,
nxlo_out,nxhi_out,nylo_out,nyhi_out,nzlo_out,nzhi_out,
procneigh[0][0],procneigh[0][1],procneigh[1][0],
procneigh[1][1],procneigh[2][0],procneigh[2][1]);
}
/* ----------------------------------------------------------------------
deallocate memory that depends on # of K-vectors and order
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::deallocate()
{
memory->destroy_kokkos(d_density_fft,density_fft);
density_fft = NULL;
memory->destroy_kokkos(d_greensfn,greensfn);
greensfn = NULL;
memory->destroy_kokkos(d_work1,work1);
work1 = NULL;
memory->destroy_kokkos(d_work2,work2);
work2 = NULL;
delete fft1;
fft1 = NULL;
delete fft2;
fft2 = NULL;
delete remap;
remap = NULL;
delete cg;
cg = NULL;
}
/* ----------------------------------------------------------------------
allocate per-atomKK memory that depends on # of K-vectors and order
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::allocate_peratom()
{
peratom_allocate_flag = 1;
d_u_brick = typename AT::t_FFT_SCALAR_3d("pppm:u_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
d_v0_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_v0_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
d_v1_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_v1_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
d_v2_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_v2_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
d_v3_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_v3_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
d_v4_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_v4_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
d_v5_brick = typename AT::t_FFT_SCALAR_3d("pppm:d_v5_brick",nzhi_out-nzlo_out+1,nyhi_out-nylo_out+1,nxhi_out-nxlo_out+1);
// create ghost grid object for rho and electric field communication
int (*procneigh)[2] = comm->procneigh;
cg_peratom =
new GridCommKokkos<DeviceType>(lmp,world,7,1,
nxlo_in,nxhi_in,nylo_in,nyhi_in,nzlo_in,nzhi_in,
nxlo_out,nxhi_out,nylo_out,nyhi_out,nzlo_out,nzhi_out,
procneigh[0][0],procneigh[0][1],procneigh[1][0],
procneigh[1][1],procneigh[2][0],procneigh[2][1]);
}
/* ----------------------------------------------------------------------
deallocate per-atomKK memory that depends on # of K-vectors and order
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::deallocate_peratom()
{
peratom_allocate_flag = 0;
delete cg_peratom;
cg_peratom = NULL;
}
/* ----------------------------------------------------------------------
set global size of PPPM grid = nx,ny,nz_pppm
used for charge accumulation, FFTs, and electric field interpolation
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::set_grid_global()
{
// use xprd,yprd,zprd (even if triclinic, and then scale later)
// adjust z dimension for 2d slab PPPM
// 3d PPPM just uses zprd since slab_volfactor = 1.0
double xprd = domain->xprd;
double yprd = domain->yprd;
double zprd = domain->zprd;
double zprd_slab = zprd*slab_volfactor;
// make initial g_ewald estimate
// based on desired accuracy and real space cutoff
// fluid-occupied volume used to estimate real-space error
// zprd used rather than zprd_slab
double h;
bigint natoms = atomKK->natoms;
if (!gewaldflag) {
if (accuracy <= 0.0)
error->all(FLERR,"KSpace accuracy must be > 0");
g_ewald = accuracy*sqrt(natoms*cutoff*xprd*yprd*zprd) / (2.0*q2);
if (g_ewald >= 1.0) g_ewald = (1.35 - 0.15*log(accuracy))/cutoff;
else g_ewald = sqrt(-log(g_ewald)) / cutoff;
}
// set optimal nx_pppm,ny_pppm,nz_pppm based on order and accuracy
// nz_pppm uses extended zprd_slab instead of zprd
// reduce it until accuracy target is met
if (!gridflag) {
double err;
h_x = h_y = h_z = 1.0/g_ewald;
nx_pppm = static_cast<int> (xprd/h_x) + 1;
ny_pppm = static_cast<int> (yprd/h_y) + 1;
nz_pppm = static_cast<int> (zprd_slab/h_z) + 1;
err = estimate_ik_error(h_x,xprd,natoms);
while (err > accuracy) {
err = estimate_ik_error(h_x,xprd,natoms);
nx_pppm++;
h_x = xprd/nx_pppm;
}
err = estimate_ik_error(h_y,yprd,natoms);
while (err > accuracy) {
err = estimate_ik_error(h_y,yprd,natoms);
ny_pppm++;
h_y = yprd/ny_pppm;
}
err = estimate_ik_error(h_z,zprd_slab,natoms);
while (err > accuracy) {
err = estimate_ik_error(h_z,zprd_slab,natoms);
nz_pppm++;
h_z = zprd_slab/nz_pppm;
}
// scale grid for triclinic skew
if (triclinic) {
double tmp[3];
tmp[0] = nx_pppm/xprd;
tmp[1] = ny_pppm/yprd;
tmp[2] = nz_pppm/zprd;
lamda2xT(&tmp[0],&tmp[0]);
nx_pppm = static_cast<int>(tmp[0]) + 1;
ny_pppm = static_cast<int>(tmp[1]) + 1;
nz_pppm = static_cast<int>(tmp[2]) + 1;
}
}
// boost grid size until it is factorable
while (!factorable(nx_pppm)) nx_pppm++;
while (!factorable(ny_pppm)) ny_pppm++;
while (!factorable(nz_pppm)) nz_pppm++;
if (triclinic == 0) {
h_x = xprd/nx_pppm;
h_y = yprd/ny_pppm;
h_z = zprd_slab/nz_pppm;
} else {
double tmp[3];
tmp[0] = nx_pppm;
tmp[1] = ny_pppm;
tmp[2] = nz_pppm;
x2lamdaT(&tmp[0],&tmp[0]);
h_x = 1.0/tmp[0];
h_y = 1.0/tmp[1];
h_z = 1.0/tmp[2];
}
if (nx_pppm >= OFFSET || ny_pppm >= OFFSET || nz_pppm >= OFFSET)
error->all(FLERR,"PPPM grid is too large");
}
/* ----------------------------------------------------------------------
check if all factors of n are in list of factors
return 1 if yes, 0 if no
------------------------------------------------------------------------- */
template<class DeviceType>
int PPPMKokkos<DeviceType>::factorable(int n)
{
int i;
while (n > 1) {
for (i = 0; i < nfactors; i++) {
if (n % factors[i] == 0) {
n /= factors[i];
break;
}
}
if (i == nfactors) return 0;
}
return 1;
}
/* ----------------------------------------------------------------------
compute estimated kspace force error
------------------------------------------------------------------------- */
template<class DeviceType>
double PPPMKokkos<DeviceType>::compute_df_kspace()
{
double xprd = domain->xprd;
double yprd = domain->yprd;
double zprd = domain->zprd;
double zprd_slab = zprd*slab_volfactor;
bigint natoms = atomKK->natoms;
double df_kspace = 0.0;
double lprx = estimate_ik_error(h_x,xprd,natoms);
double lpry = estimate_ik_error(h_y,yprd,natoms);
double lprz = estimate_ik_error(h_z,zprd_slab,natoms);
df_kspace = sqrt(lprx*lprx + lpry*lpry + lprz*lprz) / sqrt(3.0);
return df_kspace;
}
/* ----------------------------------------------------------------------
estimate kspace force error for ik method
------------------------------------------------------------------------- */
template<class DeviceType>
double PPPMKokkos<DeviceType>::estimate_ik_error(double h, double prd, bigint natoms)
{
double sum = 0.0;
for (int m = 0; m < order; m++)
sum += acons(order,m) * pow(h*g_ewald,2.0*m);
double value = q2 * pow(h*g_ewald,(double)order) *
sqrt(g_ewald*prd*sqrt(MY_2PI)*sum/natoms) / (prd*prd);
return value;
}
/* ----------------------------------------------------------------------
adjust the g_ewald parameter to near its optimal value
using a Newton-Raphson solver
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::adjust_gewald()
{
double dx;
for (int i = 0; i < LARGE; i++) {
dx = newton_raphson_f() / derivf();
g_ewald -= dx;
if (fabs(newton_raphson_f()) < SMALL) return;
}
char str[128];
sprintf(str, "Could not compute g_ewald");
error->all(FLERR, str);
}
/* ----------------------------------------------------------------------
calculate f(x) using Newton-Raphson solver
------------------------------------------------------------------------- */
template<class DeviceType>
double PPPMKokkos<DeviceType>::newton_raphson_f()
{
double xprd = domain->xprd;
double yprd = domain->yprd;
double zprd = domain->zprd;
bigint natoms = atomKK->natoms;
double df_rspace = 2.0*q2*exp(-g_ewald*g_ewald*cutoff*cutoff) /
sqrt(natoms*cutoff*xprd*yprd*zprd);
double df_kspace = compute_df_kspace();
return df_rspace - df_kspace;
}
/* ----------------------------------------------------------------------
calculate numerical derivative f'(x) using forward difference
[f(x + h) - f(x)] / h
------------------------------------------------------------------------- */
template<class DeviceType>
double PPPMKokkos<DeviceType>::derivf()
{
double h = 0.000001; //Derivative step-size
double df,f1,f2,g_ewald_old;
f1 = newton_raphson_f();
g_ewald_old = g_ewald;
g_ewald += h;
f2 = newton_raphson_f();
g_ewald = g_ewald_old;
df = (f2 - f1)/h;
return df;
}
/* ----------------------------------------------------------------------
calculate the final estimate of the accuracy
------------------------------------------------------------------------- */
template<class DeviceType>
double PPPMKokkos<DeviceType>::final_accuracy()
{
double xprd = domain->xprd;
double yprd = domain->yprd;
double zprd = domain->zprd;
bigint natoms = atomKK->natoms;
double df_kspace = compute_df_kspace();
double q2_over_sqrt = q2 / sqrt(natoms*cutoff*xprd*yprd*zprd);
double df_rspace = 2.0 * q2_over_sqrt * exp(-g_ewald*g_ewald*cutoff*cutoff);
double df_table = estimate_table_accuracy(q2_over_sqrt,df_rspace);
double estimated_accuracy = sqrt(df_kspace*df_kspace + df_rspace*df_rspace +
df_table*df_table);
return estimated_accuracy;
}
/* ----------------------------------------------------------------------
set local subset of PPPM/FFT grid that I own
n xyz lo/hi in = 3d brick that I own (inclusive)
n xyz lo/hi out = 3d brick + ghost cells in 6 directions (inclusive)
n xyz lo/hi fft = FFT columns that I own (all of x dim, 2d decomp in yz)
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::set_grid_local()
{
// global indices of PPPM grid range from 0 to N-1
// nlo_in,nhi_in = lower/upper limits of the 3d sub-brick of
// global PPPM grid that I own without ghost cells
// for slab PPPM, assign z grid as if it were not extended
nxlo_in = static_cast<int> (comm->xsplit[comm->myloc[0]] * nx_pppm);
nxhi_in = static_cast<int> (comm->xsplit[comm->myloc[0]+1] * nx_pppm) - 1;
nylo_in = static_cast<int> (comm->ysplit[comm->myloc[1]] * ny_pppm);
nyhi_in = static_cast<int> (comm->ysplit[comm->myloc[1]+1] * ny_pppm) - 1;
nzlo_in = static_cast<int>
(comm->zsplit[comm->myloc[2]] * nz_pppm/slab_volfactor);
nzhi_in = static_cast<int>
(comm->zsplit[comm->myloc[2]+1] * nz_pppm/slab_volfactor) - 1;
// nlower,nupper = stencil size for mapping particles to PPPM grid
nlower = -(order-1)/2;
nupper = order/2;
// shift values for particle <-> grid mapping
// add/subtract OFFSET to avoid int(-0.75) = 0 when want it to be -1
if (order % 2) shift = OFFSET + 0.5;
else shift = OFFSET;
if (order % 2) shiftone = 0.0;
else shiftone = 0.5;
// nlo_out,nhi_out = lower/upper limits of the 3d sub-brick of
// global PPPM grid that my particles can contribute charge to
// effectively nlo_in,nhi_in + ghost cells
// nlo,nhi = global coords of grid pt to "lower left" of smallest/largest
// position a particle in my box can be at
// dist[3] = particle position bound = subbox + skin/2.0 + qdist
// qdist = offset due to TIP4P fictitious charge
// convert to triclinic if necessary
// nlo_out,nhi_out = nlo,nhi + stencil size for particle mapping
// for slab PPPM, assign z grid as if it were not extended
double *prd,*sublo,*subhi;
if (triclinic == 0) {
prd = domain->prd;
boxlo[0] = domain->boxlo[0];
boxlo[1] = domain->boxlo[1];
boxlo[2] = domain->boxlo[2];
sublo = domain->sublo;
subhi = domain->subhi;
} else {
prd = domain->prd_lamda;
boxlo[0] = domain->boxlo_lamda[0];
boxlo[1] = domain->boxlo_lamda[1];
boxlo[2] = domain->boxlo_lamda[2];
domain->x2lamda(atomKK->nlocal);
sublo = domain->sublo_lamda;
subhi = domain->subhi_lamda;
}
double xprd = prd[0];
double yprd = prd[1];
double zprd = prd[2];
double zprd_slab = zprd*slab_volfactor;
double dist[3];
double cuthalf = 0.5*neighbor->skin + qdist;
if (triclinic == 0) dist[0] = dist[1] = dist[2] = cuthalf;
else kspacebbox(cuthalf,&dist[0]);
int nlo,nhi;
nlo = static_cast<int> ((sublo[0]-dist[0]-boxlo[0]) *
nx_pppm/xprd + shift) - OFFSET;
nhi = static_cast<int> ((subhi[0]+dist[0]-boxlo[0]) *
nx_pppm/xprd + shift) - OFFSET;
nxlo_out = nlo + nlower;
nxhi_out = nhi + nupper;
nlo = static_cast<int> ((sublo[1]-dist[1]-boxlo[1]) *
ny_pppm/yprd + shift) - OFFSET;
nhi = static_cast<int> ((subhi[1]+dist[1]-boxlo[1]) *
ny_pppm/yprd + shift) - OFFSET;
nylo_out = nlo + nlower;
nyhi_out = nhi + nupper;
nlo = static_cast<int> ((sublo[2]-dist[2]-boxlo[2]) *
nz_pppm/zprd_slab + shift) - OFFSET;
nhi = static_cast<int> ((subhi[2]+dist[2]-boxlo[2]) *
nz_pppm/zprd_slab + shift) - OFFSET;
nzlo_out = nlo + nlower;
nzhi_out = nhi + nupper;
// for slab PPPM, change the grid boundary for processors at +z end
// to include the empty volume between periodically repeating slabs
// for slab PPPM, want charge data communicated from -z proc to +z proc,
// but not vice versa, also want field data communicated from +z proc to
// -z proc, but not vice versa
// this is accomplished by nzhi_in = nzhi_out on +z end (no ghost cells)
// also insure no other procs use ghost cells beyond +z limit
if (slabflag == 1) {
if (comm->myloc[2] == comm->procgrid[2]-1)
nzhi_in = nzhi_out = nz_pppm - 1;
nzhi_out = MIN(nzhi_out,nz_pppm-1);
}
// decomposition of FFT mesh
// global indices range from 0 to N-1
// proc owns entire x-dimension, clumps of columns in y,z dimensions
// npey_fft,npez_fft = # of procs in y,z dims
// if nprocs is small enough, proc can own 1 or more entire xy planes,
// else proc owns 2d sub-blocks of yz plane
// me_y,me_z = which proc (0-npe_fft-1) I am in y,z dimensions
// nlo_fft,nhi_fft = lower/upper limit of the section
// of the global FFT mesh that I own
int npey_fft,npez_fft;
if (nz_pppm >= nprocs) {
npey_fft = 1;
npez_fft = nprocs;
} else procs2grid2d(nprocs,ny_pppm,nz_pppm,&npey_fft,&npez_fft);
int me_y = me % npey_fft;
int me_z = me / npey_fft;
nxlo_fft = 0;
nxhi_fft = nx_pppm - 1;
nylo_fft = me_y*ny_pppm/npey_fft;
nyhi_fft = (me_y+1)*ny_pppm/npey_fft - 1;
nzlo_fft = me_z*nz_pppm/npez_fft;
nzhi_fft = (me_z+1)*nz_pppm/npez_fft - 1;
// PPPM grid pts owned by this proc, including ghosts
ngrid = (nxhi_out-nxlo_out+1) * (nyhi_out-nylo_out+1) *
(nzhi_out-nzlo_out+1);
// FFT grids owned by this proc, without ghosts
// nfft = FFT points in FFT decomposition on this proc
// nfft_brick = FFT points in 3d brick-decomposition on this proc
// nfft_both = greater of 2 values
nfft = (nxhi_fft-nxlo_fft+1) * (nyhi_fft-nylo_fft+1) *
(nzhi_fft-nzlo_fft+1);
int nfft_brick = (nxhi_in-nxlo_in+1) * (nyhi_in-nylo_in+1) *
(nzhi_in-nzlo_in+1);
nfft_both = MAX(nfft,nfft_brick);
}
/* ----------------------------------------------------------------------
pre-compute Green's function denominator expansion coeffs, Gamma(2n)
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::compute_gf_denom()
{
int k,l,m;
for (l = 1; l < order; l++) k_gf_b.h_view[l] = 0.0;
k_gf_b.h_view[0] = 1.0;
for (m = 1; m < order; m++) {
for (l = m; l > 0; l--)
k_gf_b.h_view[l] = 4.0 * (k_gf_b.h_view[l]*(l-m)*(l-m-0.5)-k_gf_b.h_view[l-1]*(l-m-1)*(l-m-1));
k_gf_b.h_view[0] = 4.0 * (k_gf_b.h_view[0]*(l-m)*(l-m-0.5));
}
bigint ifact = 1;
for (k = 1; k < 2*order; k++) ifact *= k;
double gaminv = 1.0/ifact;
for (l = 0; l < order; l++) k_gf_b.h_view[l] *= gaminv;
k_gf_b.template modify<LMPHostType>();
k_gf_b.template sync<DeviceType>();
}
/* ----------------------------------------------------------------------
pre-compute modified (Hockney-Eastwood) Coulomb Green's function
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::compute_gf_ik()
{
const double * const prd = domain->prd;
xprd = prd[0];
yprd = prd[1];
const double zprd = prd[2];
zprd_slab = zprd*slab_volfactor;
unitkx = (MY_2PI/xprd);
unitky = (MY_2PI/yprd);
unitkz = (MY_2PI/zprd_slab);
nbx = static_cast<int> ((g_ewald*xprd/(MY_PI*nx_pppm)) *
pow(-log(EPS_HOC),0.25));
nby = static_cast<int> ((g_ewald*yprd/(MY_PI*ny_pppm)) *
pow(-log(EPS_HOC),0.25));
nbz = static_cast<int> ((g_ewald*zprd_slab/(MY_PI*nz_pppm)) *
pow(-log(EPS_HOC),0.25));
twoorder = 2*order;
// merge three outer loops into one for better threading
numz_fft = nzhi_fft-nzlo_fft + 1;
numy_fft = nyhi_fft-nylo_fft + 1;
numx_fft = nxhi_fft-nxlo_fft + 1;
const int inum_fft = numz_fft*numy_fft*numx_fft;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_compute_gf_ik>(0,inum_fft),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_compute_gf_ik, const int &n) const
{
int m = n/(numy_fft*numx_fft);
int l = (n - m*numy_fft*numx_fft) / numx_fft;
int k = n - m*numy_fft*numx_fft - l*numx_fft;
m += nzlo_fft;
l += nylo_fft;
k += nxlo_fft;
const int mper = m - nz_pppm*(2*m/nz_pppm);
const double snz = square(sin(0.5*unitkz*mper*zprd_slab/nz_pppm));
const int lper = l - ny_pppm*(2*l/ny_pppm);
const double sny = square(sin(0.5*unitky*lper*yprd/ny_pppm));
const int kper = k - nx_pppm*(2*k/nx_pppm);
const double snx = square(sin(0.5*unitkx*kper*xprd/nx_pppm));
const double sqk = square(unitkx*kper) + square(unitky*lper) + square(unitkz*mper);
if (sqk != 0.0) {
const double numerator = 12.5663706/sqk;
const double denominator = gf_denom(snx,sny,snz);
double sum1 = 0.0;
for (int nx = -nbx; nx <= nbx; nx++) {
const double qx = unitkx*(kper+nx_pppm*nx);
const double sx = exp(-0.25*square(qx/g_ewald));
const double argx = 0.5*qx*xprd/nx_pppm;
const double wx = powsinxx(argx,twoorder);
for (int ny = -nby; ny <= nby; ny++) {
const double qy = unitky*(lper+ny_pppm*ny);
const double sy = exp(-0.25*square(qy/g_ewald));
const double argy = 0.5*qy*yprd/ny_pppm;
const double wy = powsinxx(argy,twoorder);
for (int nz = -nbz; nz <= nbz; nz++) {
const double qz = unitkz*(mper+nz_pppm*nz);
const double sz = exp(-0.25*square(qz/g_ewald));
const double argz = 0.5*qz*zprd_slab/nz_pppm;
const double wz = powsinxx(argz,twoorder);
const double dot1 = unitkx*kper*qx + unitky*lper*qy + unitkz*mper*qz;
const double dot2 = qx*qx+qy*qy+qz*qz;
sum1 += (dot1/dot2) * sx*sy*sz * wx*wy*wz;
}
}
}
d_greensfn[n] = numerator*sum1/denominator;
} else d_greensfn[n] = 0.0;
}
/* ----------------------------------------------------------------------
pre-compute modified (Hockney-Eastwood) Coulomb Green's function
for a triclinic system
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::compute_gf_ik_triclinic()
{
double tmp[3];
tmp[0] = (g_ewald/(MY_PI*nx_pppm)) * pow(-log(EPS_HOC),0.25);
tmp[1] = (g_ewald/(MY_PI*ny_pppm)) * pow(-log(EPS_HOC),0.25);
tmp[2] = (g_ewald/(MY_PI*nz_pppm)) * pow(-log(EPS_HOC),0.25);
lamda2xT(&tmp[0],&tmp[0]);
nbx = static_cast<int> (tmp[0]);
nby = static_cast<int> (tmp[1]);
nbz = static_cast<int> (tmp[2]);
twoorder = 2*order;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_compute_gf_ik_triclinic>(nzlo_fft,nzhi_fft+1),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_compute_gf_ik_triclinic, const int &m) const
{
//int n = (m - nzlo_fft)*(nyhi_fft+1 - nylo_fft)*(nxhi_fft+1 - nxlo_fft);
//
//const int mper = m - nz_pppm*(2*m/nz_pppm);
//const double snz = square(sin(MY_PI*mper/nz_pppm));
//
//for (int l = nylo_fft; l <= nyhi_fft; l++) {
// const int lper = l - ny_pppm*(2*l/ny_pppm);
// const double sny = square(sin(MY_PI*lper/ny_pppm));
//
// for (int k = nxlo_fft; k <= nxhi_fft; k++) {
// const int kper = k - nx_pppm*(2*k/nx_pppm);
// const double snx = square(sin(MY_PI*kper/nx_pppm));
//
// double unitk_lamda[3];
// unitk_lamda[0] = 2.0*MY_PI*kper;
// unitk_lamda[1] = 2.0*MY_PI*lper;
// unitk_lamda[2] = 2.0*MY_PI*mper;
// x2lamdaT(&unitk_lamda[0],&unitk_lamda[0]);
//
// const double sqk = square(unitk_lamda[0]) + square(unitk_lamda[1]) + square(unitk_lamda[2]);
//
// if (sqk != 0.0) {
// const double numerator = 12.5663706/sqk;
// const double denominator = gf_denom(snx,sny,snz);
// double sum1 = 0.0;
//
// for (int nx = -nbx; nx <= nbx; nx++) {
// const double argx = MY_PI*kper/nx_pppm + MY_PI*nx;
// const double wx = powsinxx(argx,twoorder);
//
// for (int ny = -nby; ny <= nby; ny++) {
// const double argy = MY_PI*lper/ny_pppm + MY_PI*ny;
// const double wy = powsinxx(argy,twoorder);
//
// for (int nz = -nbz; nz <= nbz; nz++) {
// const double argz = MY_PI*mper/nz_pppm + MY_PI*nz;
// const double wz = powsinxx(argz,twoorder);
//
// double b[3];
// b[0] = 2.0*MY_PI*nx_pppm*nx;
// b[1] = 2.0*MY_PI*ny_pppm*ny;
// b[2] = 2.0*MY_PI*nz_pppm*nz;
// x2lamdaT(&b[0],&b[0]);
//
// const double qx = unitk_lamda[0]+b[0];
// const double sx = exp(-0.25*square(qx/g_ewald));
//
// const double qy = unitk_lamda[1]+b[1];
// const double sy = exp(-0.25*square(qy/g_ewald));
//
// const double qz = unitk_lamda[2]+b[2];
// const double sz = exp(-0.25*square(qz/g_ewald));
//
// const double dot1 = unitk_lamda[0]*qx + unitk_lamda[1]*qy + unitk_lamda[2]*qz;
// const double dot2 = qx*qx+qy*qy+qz*qz;
// sum1 += (dot1/dot2) * sx*sy*sz * wx*wy*wz;
// }
// }
// }
// d_greensfn[n++] = numerator*sum1/denominator;
// } else d_greensfn[n++] = 0.0;
// }
//}
}
/* ----------------------------------------------------------------------
find center grid pt for each of my particles
check that full stencil for the particle will fit in my 3d brick
store central grid pt indices in part2grid array
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::particle_map()
{
int nlocal = atomKK->nlocal;
k_flag.h_view() = 0;
k_flag.template modify<LMPHostType>();
k_flag.template sync<DeviceType>();
if (!ISFINITE(boxlo[0]) || !ISFINITE(boxlo[1]) || !ISFINITE(boxlo[2]))
error->one(FLERR,"Non-numeric box dimensions - simulation unstable");
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_particle_map>(0,nlocal),*this);
DeviceType::fence();
copymode = 0;
k_flag.template modify<DeviceType>();
k_flag.template sync<LMPHostType>();
if (k_flag.h_view()) error->one(FLERR,"Out of range atoms - cannot compute PPPM");
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_particle_map, const int &i) const
{
// (nx,ny,nz) = global coords of grid pt to "lower left" of charge
// current particle coord can be outside global and local box
// add/subtract OFFSET to avoid int(-0.75) = 0 when want it to be -1
const int nx = static_cast<int> ((x(i,0)-boxlo[0])*delxinv+shift) - OFFSET;
const int ny = static_cast<int> ((x(i,1)-boxlo[1])*delyinv+shift) - OFFSET;
const int nz = static_cast<int> ((x(i,2)-boxlo[2])*delzinv+shift) - OFFSET;
d_part2grid(i,0) = nx;
d_part2grid(i,1) = ny;
d_part2grid(i,2) = nz;
// check that entire stencil around nx,ny,nz will fit in my 3d brick
if (nx+nlower < nxlo_out || nx+nupper > nxhi_out ||
ny+nlower < nylo_out || ny+nupper > nyhi_out ||
nz+nlower < nzlo_out || nz+nupper > nzhi_out)
k_flag.view<DeviceType>()() = 1;
}
/* ----------------------------------------------------------------------
create discretized "density" on section of global grid due to my particles
density(x,y,z) = charge "density" at grid points of my 3d brick
(nxlo:nxhi,nylo:nyhi,nzlo:nzhi) is extent of my brick (including ghosts)
in global grid
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::make_rho()
{
int l,m,n,nx,ny,nz,mx,my,mz;
FFT_SCALAR dx,dy,dz,x0,y0,z0;
// clear 3d density array
//memset(&(density_brick(nzlo_out,nylo_out,nxlo_out)),0,
// ngrid*sizeof(FFT_SCALAR));
numz_out = nzhi_out-nzlo_out + 1;
numy_out = nyhi_out-nylo_out + 1;
numx_out = nxhi_out-nxlo_out + 1;
const int inum_out = numz_out*numy_out*numx_out;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_make_rho_zero>(0,inum_out),*this);
DeviceType::fence();
copymode = 0;
// loop over my charges, add their contribution to nearby grid points
// (nx,ny,nz) = global coords of grid pt to "lower left" of charge
// (dx,dy,dz) = distance to "lower left" grid pt
// (mx,my,mz) = global coords of moving stencil pt
nlocal = atomKK->nlocal;
#ifdef KOKKOS_HAVE_CUDA
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_make_rho_atomic>(0,nlocal),*this);
DeviceType::fence();
copymode = 0;
#else
ix = nxhi_out-nxlo_out + 1;
iy = nyhi_out-nylo_out + 1;
copymode = 1;
Kokkos::TeamPolicy<DeviceType, TagPPPM_make_rho> config(lmp->kokkos->num_threads,1);
Kokkos::parallel_for(config,*this);
DeviceType::fence();
copymode = 0;
#endif
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_make_rho_zero, const int &ii) const
{
int iz = ii/(numy_out*numx_out);
int iy = (ii - iz*numy_out*numx_out) / numx_out;
int ix = ii - iz*numy_out*numx_out - iy*numx_out;
d_density_brick(iz,iy,ix) = 0.0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_make_rho_atomic, const int &i) const
{
// The density_brick array is atomic for Half/Thread neighbor style
Kokkos::View<FFT_SCALAR***,Kokkos::LayoutRight,DeviceType,Kokkos::MemoryTraits<Kokkos::Atomic|Kokkos::Unmanaged> > a_density_brick = d_density_brick;
int nx = d_part2grid(i,0);
int ny = d_part2grid(i,1);
int nz = d_part2grid(i,2);
const FFT_SCALAR dx = nx+shiftone - (x(i,0)-boxlo[0])*delxinv;
const FFT_SCALAR dy = ny+shiftone - (x(i,1)-boxlo[1])*delyinv;
const FFT_SCALAR dz = nz+shiftone - (x(i,2)-boxlo[2])*delzinv;
nz -= nzlo_out;
ny -= nylo_out;
nx -= nxlo_out;
compute_rho1d(i,dx,dy,dz);
const FFT_SCALAR z0 = delvolinv * q[i];
for (int n = nlower; n <= nupper; n++) {
const int mz = n+nz;
const FFT_SCALAR y0 = z0*d_rho1d(i,n+order/2,2);
for (int m = nlower; m <= nupper; m++) {
const int my = m+ny;
const FFT_SCALAR x0 = y0*d_rho1d(i,m+order/2,1);
for (int l = nlower; l <= nupper; l++) {
const int mx = l+nx;
a_density_brick(mz,my,mx) += x0*d_rho1d(i,l+order/2,0);
}
}
}
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator() (TagPPPM_make_rho, typename Kokkos::TeamPolicy<DeviceType, TagPPPM_make_rho>::member_type dev) const {
// adapted from USER-OMP/pppm.cpp:
// determine range of grid points handled by this thread
int tid = dev.league_rank();
// each thread works on a fixed chunk of grid points
const int nthreads = dev.league_size();
const int idelta = 1 + ngrid/nthreads;
int ifrom = tid*idelta;
int ito = ((ifrom + idelta) > ngrid) ? ngrid : ifrom + idelta;
// loop over my charges, add their contribution to nearby grid points
// (nx,ny,nz) = global coords of grid pt to "lower left" of charge
// (dx,dy,dz) = distance to "lower left" grid pt
// loop over all local atoms for all threads
for (int i = 0; i < nlocal; i++) {
int nx = d_part2grid(i,0);
int ny = d_part2grid(i,1);
int nz = d_part2grid(i,2);
// pre-screen whether this atom will ever come within
// reach of the data segement this thread is updating.
if ( ((nz+nlower-nzlo_out)*ix*iy >= ito)
|| ((nz+nupper-nzlo_out+1)*ix*iy < ifrom) ) continue;
const FFT_SCALAR dx = nx+shiftone - (x(i,0)-boxlo[0])*delxinv;
const FFT_SCALAR dy = ny+shiftone - (x(i,1)-boxlo[1])*delyinv;
const FFT_SCALAR dz = nz+shiftone - (x(i,2)-boxlo[2])*delzinv;
nz -= nzlo_out;
ny -= nylo_out;
nx -= nxlo_out;
compute_rho1d(i,dx,dy,dz);
const FFT_SCALAR z0 = delvolinv * q[i];
for (int n = nlower; n <= nupper; n++) {
const int mz = n+nz;
const int in = mz*ix*iy;
const FFT_SCALAR y0 = z0*d_rho1d(i,n+order/2,2);
for (int m = nlower; m <= nupper; m++) {
const int my = m+ny;
const int im = in+my*ix;
const FFT_SCALAR x0 = y0*d_rho1d(i,m+order/2,1);
for (int l = nlower; l <= nupper; l++) {
const int mx = l+nx;
const int il = im+mx;
// make sure each thread only updates
// their elements of the density grid
if (il >= ito) break;
if (il < ifrom) continue;
d_density_brick(mz,my,mx) += x0*d_rho1d(i,l+order/2,0);
}
}
}
}
}
/* ----------------------------------------------------------------------
remap density from 3d brick decomposition to FFT decomposition
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::brick2fft()
{
// copy grabs inner portion of density from 3d brick
// remap could be done as pre-stage of FFT,
// but this works optimally on only double values, not complex values
numz_inout = (nzhi_in-nzlo_out)-(nzlo_in-nzlo_out) + 1;
numy_inout = (nyhi_in-nylo_out)-(nylo_in-nylo_out) + 1;
numx_inout = (nxhi_in-nxlo_out)-(nxlo_in-nxlo_out) + 1;
const int inum_inout = numz_inout*numy_inout*numx_inout;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_brick2fft>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
k_density_fft.template modify<DeviceType>();
k_density_fft.template sync<LMPHostType>();
remap->perform(density_fft,density_fft,work1);
k_density_fft.template modify<LMPHostType>();
k_density_fft.template sync<DeviceType>();
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_brick2fft, const int &ii) const
{
const int n = ii;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_density_fft[n] = d_density_brick(k,j,i);
}
/* ----------------------------------------------------------------------
FFT-based Poisson solver
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::poisson()
{
poisson_ik();
}
/* ----------------------------------------------------------------------
FFT-based Poisson solver for ik
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::poisson_ik()
{
int i,j,k,n;
double eng;
// transform charge density (r -> k)
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik1>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
k_work1.template modify<DeviceType>();
k_work1.template sync<LMPHostType>();
fft1->compute(work1,work1,1);
k_work1.template modify<LMPHostType>();
k_work1.template sync<DeviceType>();
// global energy and virial contribution
scaleinv = 1.0/(nx_pppm*ny_pppm*nz_pppm);
s2 = scaleinv*scaleinv;
if (eflag_global || vflag_global) {
EV_FLOAT ev;
if (vflag_global) {
copymode = 1;
Kokkos::parallel_reduce(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik2>(0,nfft),*this,ev);
DeviceType::fence();
copymode = 0;
for (j = 0; j < 6; j++) virial[j] += ev.v[j];
energy += ev.ecoul;
} else {
n = 0;
copymode = 1;
Kokkos::parallel_reduce(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik3>(0,nfft),*this,ev);
DeviceType::fence();
copymode = 0;
energy += ev.ecoul;
}
}
// scale by 1/total-grid-pts to get rho(k)
// multiply by Green's function to get V(k)
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik4>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
// extra FFTs for per-atomKK energy/virial
if (evflag_atom) poisson_peratom();
// triclinic system
if (triclinic) {
poisson_ik_triclinic();
return;
}
// compute gradients of V(r) in each of 3 dims by transformimg -ik*V(k)
// FFT leaves data in 3d brick decomposition
// copy it into inner portion of vdx,vdy,vdz arrays
// merge three outer loops into one for better threading
numz_fft = nzhi_fft-nzlo_fft + 1;
numy_fft = nyhi_fft-nylo_fft + 1;
numx_fft = nxhi_fft-nxlo_fft + 1;
const int inum_fft = numz_fft*numy_fft*numx_fft;
numz_inout = (nzhi_in-nzlo_out)-(nzlo_in-nzlo_out) + 1;
numy_inout = (nyhi_in-nylo_out)-(nylo_in-nylo_out) + 1;
numx_inout = (nxhi_in-nxlo_out)-(nxlo_in-nxlo_out) + 1;
const int inum_inout = numz_inout*numy_inout*numx_inout;
// x direction gradient
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik5>(0,inum_fft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik6>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
// y direction gradient
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik7>(0,inum_fft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik8>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
// z direction gradient
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik9>(0,inum_fft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_ik10>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik1, const int &i) const
{
d_work1[2*i] = d_density_fft[i];
d_work1[2*i+1] = ZEROF;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik2, const int &i, EV_FLOAT& ev) const
{
const double eng = s2 * d_greensfn[i] * (d_work1[2*i]*d_work1[2*i] + d_work1[2*i+1]*d_work1[2*i+1]);
for (int j = 0; j < 6; j++) ev.v[j] += eng*d_vg(i,j);
if (eflag_global) ev.ecoul += eng;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik3, const int &i, EV_FLOAT& ev) const
{
ev.ecoul +=
s2 * d_greensfn[i] * (d_work1[2*i]*d_work1[2*i] + d_work1[2*i+1]*d_work1[2*i+1]);
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik4, const int &i) const
{
d_work1[2*i] *= scaleinv * d_greensfn[i];
d_work1[2*i+1] *= scaleinv * d_greensfn[i];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik5, const int &ii) const
{
const int n = ii*2;
const int k = ii/(numy_fft*numx_fft);
const int j = (ii - k*numy_fft*numx_fft) / numx_fft;
const int i = ii - k*numy_fft*numx_fft - j*numx_fft;
d_work2[n] = d_fkx[i]*d_work1[n+1];
d_work2[n+1] = -d_fkx[i]*d_work1[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik6, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_vdx_brick(k,j,i) = d_work2[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik7, const int &ii) const
{
const int n = ii*2;
const int k = ii/(numy_fft*numx_fft);
const int j = (ii - k*numy_fft*numx_fft) / numx_fft;
d_work2[n] = d_fky[j]*d_work1[n+1];
d_work2[n+1] = -d_fky[j]*d_work1[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik8, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_vdy_brick(k,j,i) = d_work2[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik9, const int &ii) const
{
const int n = ii*2;
const int k = ii/(numy_fft*numx_fft);
d_work2[n] = d_fkz[k]*d_work1[n+1];
d_work2[n+1] = -d_fkz[k]*d_work1[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik10, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_vdz_brick(k,j,i) = d_work2[n];
}
/* ----------------------------------------------------------------------
FFT-based Poisson solver for ik for a triclinic system
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::poisson_ik_triclinic()
{
// int i,j,k,n;
//
// // compute gradients of V(r) in each of 3 dims by transformimg -ik*V(k)
// // FFT leaves data in 3d brick decomposition
// // copy it into inner portion of vdx,vdy,vdz arrays
//
// // x direction gradient
//
// n = 0;
// for (i = 0; i < nfft; i++) { // parallel_for1
// d_work2[n] = d_fkx[i]*d_work1[n+1];
// d_work2[n+1] = -d_fkx[i]*d_work1[n];
// n += 2;
// }
//
// fft2->compute(d_work2,d_work2,-1);
//
// n = 0;
// for (k = nzlo_in-nzlo_out; k <= nzhi_in-nzlo_out; k++) // parallel_for2
//
//
// // y direction gradient
//
// n = 0;
// for (i = 0; i < nfft; i++) { // parallel_for3
// d_work2[n] = d_fky[i]*d_work1[n+1];
// d_work2[n+1] = -d_fky[i]*d_work1[n];
// n += 2;
// }
//
// fft2->compute(d_work2,d_work2,-1);
//
// n = 0;
// for (k = nzlo_in-nzlo_out; k <= nzhi_in-nzlo_out; k++) // parallel_for4
// for (j = nylo_in-nylo_out; j <= nyhi_in-nylo_out; j++)
// for (i = nxlo_in-nxlo_out; i <= nxhi_in-nxlo_out; i++) {
// d_vdy_brick(k,j,i) = d_work2[n];
// n += 2;
// }
//
// // z direction gradient
//
// n = 0;
// for (i = 0; i < nfft; i++) { // parallel_for5
// d_work2[n] = d_fkz[i]*d_work1[n+1];
// d_work2[n+1] = -d_fkz[i]*d_work1[n];
// n += 2;
// }
//
// fft2->compute(d_work2,d_work2,-1);
//
// n = 0;
// for (k = nzlo_in-nzlo_out; k <= nzhi_in-nzlo_out; k++) // parallel_for6
//
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik_triclinic1, const int &k) const
{
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik_triclinic2, const int &k) const
{
// for (j = nylo_in-nylo_out; j <= nyhi_in-nylo_out; j++)
// for (i = nxlo_in-nxlo_out; i <= nxhi_in-nxlo_out; i++) {
// d_vdx_brick(k,j,i) = d_work2[n];
// n += 2;
// }
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik_triclinic3, const int &k) const
{
// int n = (k - (nzlo_in-nzlo_out))*((nyhi_in-nylo_out) - (nylo_in-nylo_out) + 1)*((nxhi_in-nxlo_out) - (nxlo_in-nxlo_out) + 1)*2;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik_triclinic4, const int &k) const
{
// int n = (k - (nzlo_in-nzlo_out))*((nyhi_in-nylo_out) - (nylo_in-nylo_out) + 1)*((nxhi_in-nxlo_out) - (nxlo_in-nxlo_out) + 1)*2;
//
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik_triclinic5, const int &k) const
{
// int n = (k - (nzlo_in-nzlo_out))*((nyhi_in-nylo_out) - (nylo_in-nylo_out) + 1)*((nxhi_in-nxlo_out) - (nxlo_in-nxlo_out) + 1)*2;
//
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_ik_triclinic6, const int &k) const
{
// int n = (k - (nzlo_in-nzlo_out))*((nyhi_in-nylo_out) - (nylo_in-nylo_out) + 1)*((nxhi_in-nxlo_out) - (nxlo_in-nxlo_out) + 1)*2;
//
// for (j = nylo_in-nylo_out; j <= nyhi_in-nylo_out; j++)
// for (i = nxlo_in-nxlo_out; i <= nxhi_in-nxlo_out; i++) {
// d_vdz_brick(k,j,i) = d_work2[n];
// n += 2;
// }
}
/* ----------------------------------------------------------------------
FFT-based Poisson solver for per-atom energy/virial
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::poisson_peratom()
{
int i,j,k,n;
// merge three outer loops into one for better threading
numz_inout = (nzhi_in-nzlo_out)-(nzlo_in-nzlo_out) + 1;
numy_inout = (nyhi_in-nylo_out)-(nylo_in-nylo_out) + 1;
numx_inout = (nxhi_in-nxlo_out)-(nxlo_in-nxlo_out) + 1;
const int inum_inout = numz_inout*numy_inout*numx_inout;
// energy
if (eflag_atom) {
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom1>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom2>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
}
// 6 components of virial in v0 thru v5
if (!vflag_atom) return;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom3>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom4>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom5>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom6>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom7>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom8>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom9>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom10>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom11>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom12>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom13>(0,nfft),*this);
DeviceType::fence();
copymode = 0;
k_work2.template modify<DeviceType>();
k_work2.template sync<LMPHostType>();
fft2->compute(work2,work2,-1);
k_work2.template modify<LMPHostType>();
k_work2.template sync<DeviceType>();
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_poisson_peratom14>(0,inum_inout),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom1, const int &i) const
{
int n = 2*i;
d_work2[n] = d_work1[n];
d_work2[n+1] = d_work1[n+1];
n += 2;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom2, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_u_brick(k,j,i) = d_work2[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom3, const int &i) const
{
int n = 2*i;
d_work2[n] = d_work1[n]*d_vg(i,0);
d_work2[n+1] = d_work1[n+1]*d_vg(i,0);
n += 2;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom4, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_v0_brick(k,j,i) = d_work2[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom5, const int &i) const
{
int n = 2*i;
d_work2[n] = d_work1[n]*d_vg(i,1);
d_work2[n+1] = d_work1[n+1]*d_vg(i,1);
n += 2;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom6, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_v1_brick(k,j,i) = d_work2[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom7, const int &i) const
{
int n = 2*i;
d_work2[n] = d_work1[n]*d_vg(i,2);
d_work2[n+1] = d_work1[n+1]*d_vg(i,2);
n += 2;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom8, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_v2_brick(k,j,i) = d_work2[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom9, const int &i) const
{
int n = 2*i;
d_work2[n] = d_work1[n]*d_vg(i,3);
d_work2[n+1] = d_work1[n+1]*d_vg(i,3);
n += 2;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom10, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_v3_brick(k,j,i) = d_work2[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom11, const int &i) const
{
int n = 2*i;
d_work2[n] = d_work1[n]*d_vg(i,4);
d_work2[n+1] = d_work1[n+1]*d_vg(i,4);
n += 2;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom12, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_v4_brick(k,j,i) = d_work2[n];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom13, const int &i) const
{
int n = 2*i;
d_work2[n] = d_work1[n]*d_vg(i,5);
d_work2[n+1] = d_work1[n+1]*d_vg(i,5);
n += 2;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_poisson_peratom14, const int &ii) const
{
const int n = ii*2;
int k = ii/(numy_inout*numx_inout);
int j = (ii - k*numy_inout*numx_inout) / numx_inout;
int i = ii - k*numy_inout*numx_inout - j*numx_inout;
k += nzlo_in-nzlo_out;
j += nylo_in-nylo_out;
i += nxlo_in-nxlo_out;
d_v5_brick(k,j,i) = d_work2[n];
}
/* ----------------------------------------------------------------------
interpolate from grid to get electric field & force on my particles
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::fieldforce()
{
fieldforce_ik();
}
/* ----------------------------------------------------------------------
interpolate from grid to get electric field & force on my particles for ik
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::fieldforce_ik()
{
// loop over my charges, interpolate electric field from nearby grid points
// (nx,ny,nz) = global coords of grid pt to "lower left" of charge
// (dx,dy,dz) = distance to "lower left" grid pt
// (mx,my,mz) = global coords of moving stencil pt
// ek = 3 components of E-field on particle
int nlocal = atomKK->nlocal;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_fieldforce_ik>(0,nlocal),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_fieldforce_ik, const int &i) const
{
int l,m,n,nx,ny,nz,mx,my,mz;
FFT_SCALAR dx,dy,dz,x0,y0,z0;
FFT_SCALAR ekx,eky,ekz;
nx = d_part2grid(i,0);
ny = d_part2grid(i,1);
nz = d_part2grid(i,2);
dx = nx+shiftone - (x(i,0)-boxlo[0])*delxinv;
dy = ny+shiftone - (x(i,1)-boxlo[1])*delyinv;
dz = nz+shiftone - (x(i,2)-boxlo[2])*delzinv;
nz -= nzlo_out;
ny -= nylo_out;
nx -= nxlo_out;
//compute_rho1d(i,dx,dy,dz); // hasn't changed from make_rho
ekx = eky = ekz = ZEROF;
for (n = nlower; n <= nupper; n++) {
mz = n+nz;
z0 = d_rho1d(i,n+order/2,2);
for (m = nlower; m <= nupper; m++) {
my = m+ny;
y0 = z0*d_rho1d(i,m+order/2,1);
for (l = nlower; l <= nupper; l++) {
mx = l+nx;
x0 = y0*d_rho1d(i,l+order/2,0);
ekx -= x0*d_vdx_brick(mz,my,mx);
eky -= x0*d_vdy_brick(mz,my,mx);
ekz -= x0*d_vdz_brick(mz,my,mx);
}
}
}
// convert E-field to force
const double qfactor = qqrd2e * scale * q[i];
f(i,0) += qfactor*ekx;
f(i,1) += qfactor*eky;
if (slabflag != 2) f(i,2) += qfactor*ekz;
}
/* ----------------------------------------------------------------------
interpolate from grid to get per-atom energy/virial
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::fieldforce_peratom()
{
// loop over my charges, interpolate from nearby grid points
// (nx,ny,nz) = global coords of grid pt to "lower left" of charge
// (dx,dy,dz) = distance to "lower left" grid pt
// (mx,my,mz) = global coords of moving stencil pt
int nlocal = atomKK->nlocal;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_fieldforce_peratom>(0,nlocal),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_fieldforce_peratom, const int &i) const
{
int l,m,n,nx,ny,nz,mx,my,mz;
FFT_SCALAR dx,dy,dz,x0,y0,z0;
FFT_SCALAR u,v0,v1,v2,v3,v4,v5;
nx = d_part2grid(i,0);
ny = d_part2grid(i,1);
nz = d_part2grid(i,2);
dx = nx+shiftone - (x(i,0)-boxlo[0])*delxinv;
dy = ny+shiftone - (x(i,1)-boxlo[1])*delyinv;
dz = nz+shiftone - (x(i,2)-boxlo[2])*delzinv;
nz -= nzlo_out;
ny -= nylo_out;
nx -= nxlo_out;
compute_rho1d(i,dx,dy,dz);
u = v0 = v1 = v2 = v3 = v4 = v5 = ZEROF;
for (n = nlower; n <= nupper; n++) {
mz = n+nz;
z0 = d_rho1d(i,n+order/2,2);
for (m = nlower; m <= nupper; m++) {
my = m+ny;
y0 = z0*d_rho1d(i,m+order/2,1);
for (l = nlower; l <= nupper; l++) {
mx = l+nx;
x0 = y0*d_rho1d(i,l+order/2,0);
if (eflag_atom) u += x0*d_u_brick(mz,my,mx);
if (vflag_atom) {
v0 += x0*d_v0_brick(mz,my,mx);
v1 += x0*d_v1_brick(mz,my,mx);
v2 += x0*d_v2_brick(mz,my,mx);
v3 += x0*d_v3_brick(mz,my,mx);
v4 += x0*d_v4_brick(mz,my,mx);
v5 += x0*d_v5_brick(mz,my,mx);
}
}
}
}
if (eflag_atom) d_eatom[i] += q[i]*u;
if (vflag_atom) {
d_vatom(i,0) += q[i]*v0;
d_vatom(i,1) += q[i]*v1;
d_vatom(i,2) += q[i]*v2;
d_vatom(i,3) += q[i]*v3;
d_vatom(i,4) += q[i]*v4;
d_vatom(i,5) += q[i]*v5;
}
}
/* ----------------------------------------------------------------------
pack own values to buf to send to another proc
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::pack_forward_kokkos(int flag, Kokkos::DualView<FFT_SCALAR*,Kokkos::LayoutRight,LMPDeviceType> &k_buf, int nlist, DAT::tdual_int_2d &k_list, int index)
{
typename AT::t_int_2d_um d_list = k_list.view<DeviceType>();
d_list_index = Kokkos::subview(d_list,index,Kokkos::ALL());
d_buf = k_buf.view<DeviceType>();
nx = (nxhi_out-nxlo_out+1);
ny = (nyhi_out-nylo_out+1);
if (flag == FORWARD_IK) {
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_pack_forward1>(0,nlist),*this);
DeviceType::fence();
copymode = 0;
} else if (flag == FORWARD_IK_PERATOM) {
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_pack_forward2>(0,nlist),*this);
DeviceType::fence();
copymode = 0;
}
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_pack_forward1, const int &i) const
{
const double dlist = (double) d_list_index[i];
const int iz = (int) (dlist/(nx*ny));
const int iy = (int) ((dlist - iz*nx*ny)/nx);
const int ix = d_list_index[i] - iz*nx*ny - iy*nx;
d_buf[3*i] = d_vdx_brick(iz,iy,ix);
d_buf[3*i+1] = d_vdy_brick(iz,iy,ix);
d_buf[3*i+2] = d_vdz_brick(iz,iy,ix);
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_pack_forward2, const int &i) const
{
const double dlist = (double) d_list_index[i];
const int iz = (int) (dlist/(nx*ny));
const int iy = (int) ((dlist - iz*nx*ny)/nx);
const int ix = d_list_index[i] - iz*nx*ny - iy*nx;
if (eflag_atom) d_buf[7*i] = d_u_brick(iz,iy,ix);
if (vflag_atom) {
d_buf[7*i+1] = d_v0_brick(iz,iy,ix);
d_buf[7*i+2] = d_v1_brick(iz,iy,ix);
d_buf[7*i+3] = d_v2_brick(iz,iy,ix);
d_buf[7*i+4] = d_v3_brick(iz,iy,ix);
d_buf[7*i+5] = d_v4_brick(iz,iy,ix);
d_buf[7*i+6] = d_v5_brick(iz,iy,ix);
}
}
/* ----------------------------------------------------------------------
unpack another proc's own values from buf and set own ghost values
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::unpack_forward_kokkos(int flag, Kokkos::DualView<FFT_SCALAR*,Kokkos::LayoutRight,LMPDeviceType> &k_buf, int nlist, DAT::tdual_int_2d &k_list, int index)
{
typename AT::t_int_2d_um d_list = k_list.view<DeviceType>();
d_list_index = Kokkos::subview(d_list,index,Kokkos::ALL());
d_buf = k_buf.view<DeviceType>();
nx = (nxhi_out-nxlo_out+1);
ny = (nyhi_out-nylo_out+1);
if (flag == FORWARD_IK) {
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_unpack_forward1>(0,nlist),*this);
DeviceType::fence();
copymode = 0;
} else if (flag == FORWARD_IK_PERATOM) {
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_unpack_forward2>(0,nlist),*this);
DeviceType::fence();
copymode = 0;
}
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_unpack_forward1, const int &i) const
{
const double dlist = (double) d_list_index[i];
const int iz = (int) (dlist/(nx*ny));
const int iy = (int) ((dlist - iz*nx*ny)/nx);
const int ix = d_list_index[i] - iz*nx*ny - iy*nx;
d_vdx_brick(iz,iy,ix) = d_buf[3*i];
d_vdy_brick(iz,iy,ix) = d_buf[3*i+1];
d_vdz_brick(iz,iy,ix) = d_buf[3*i+2];
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_unpack_forward2, const int &i) const
{
const double dlist = (double) d_list_index[i];
const int iz = (int) (dlist/(nx*ny));
const int iy = (int) ((dlist - iz*nx*ny)/nx);
const int ix = d_list_index[i] - iz*nx*ny - iy*nx;
if (eflag_atom) d_u_brick(iz,iy,ix) = d_buf[7*i];
if (vflag_atom) {
d_v0_brick(iz,iy,ix) = d_buf[7*i+1];
d_v1_brick(iz,iy,ix) = d_buf[7*i+2];
d_v2_brick(iz,iy,ix) = d_buf[7*i+3];
d_v3_brick(iz,iy,ix) = d_buf[7*i+4];
d_v4_brick(iz,iy,ix) = d_buf[7*i+5];
d_v5_brick(iz,iy,ix) = d_buf[7*i+6];
}
}
/* ----------------------------------------------------------------------
pack ghost values into buf to send to another proc
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::pack_reverse_kokkos(int flag, Kokkos::DualView<FFT_SCALAR*,Kokkos::LayoutRight,LMPDeviceType> &k_buf, int nlist, DAT::tdual_int_2d &k_list, int index)
{
typename AT::t_int_2d_um d_list = k_list.view<DeviceType>();
d_list_index = Kokkos::subview(d_list,index,Kokkos::ALL());
d_buf = k_buf.view<DeviceType>();
nx = (nxhi_out-nxlo_out+1);
ny = (nyhi_out-nylo_out+1);
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_pack_reverse>(0,nlist),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_pack_reverse, const int &i) const
{
const double dlist = (double) d_list_index[i];
const int iz = (int) (dlist/(nx*ny));
const int iy = (int) ((dlist - iz*nx*ny)/nx);
const int ix = d_list_index[i] - iz*nx*ny - iy*nx;
d_buf[i] = d_density_brick(iz,iy,ix);
}
/* ----------------------------------------------------------------------
unpack another proc's ghost values from buf and add to own values
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::unpack_reverse_kokkos(int flag, Kokkos::DualView<FFT_SCALAR*,Kokkos::LayoutRight,LMPDeviceType> &k_buf, int nlist, DAT::tdual_int_2d &k_list, int index)
{
typename AT::t_int_2d_um d_list = k_list.view<DeviceType>();
d_list_index = Kokkos::subview(d_list,index,Kokkos::ALL());
d_buf = k_buf.view<DeviceType>();
int nx = (nxhi_out-nxlo_out+1);
int ny = (nyhi_out-nylo_out+1);
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_unpack_reverse>(0,nlist),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_unpack_reverse, const int &i) const
{
const double dlist = (double) d_list_index[i];
const int iz = (int) (dlist/(nx*ny));
const int iy = (int) ((dlist - iz*nx*ny)/nx);
const int ix = d_list_index[i] - iz*nx*ny - iy*nx;
d_density_brick(iz,iy,ix) += d_buf[i];
}
/* ----------------------------------------------------------------------
map nprocs to NX by NY grid as PX by PY procs - return optimal px,py
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::procs2grid2d(int nprocs, int nx, int ny, int *px, int *py)
{
// loop thru all possible factorizations of nprocs
// surf = surface area of largest proc sub-domain
// innermost if test minimizes surface area and surface/volume ratio
int bestsurf = 2 * (nx + ny);
int bestboxx = 0;
int bestboxy = 0;
int boxx,boxy,surf,ipx,ipy;
ipx = 1;
while (ipx <= nprocs) {
if (nprocs % ipx == 0) {
ipy = nprocs/ipx;
boxx = nx/ipx;
if (nx % ipx) boxx++;
boxy = ny/ipy;
if (ny % ipy) boxy++;
surf = boxx + boxy;
if (surf < bestsurf ||
(surf == bestsurf && boxx*boxy > bestboxx*bestboxy)) {
bestsurf = surf;
bestboxx = boxx;
bestboxy = boxy;
*px = ipx;
*py = ipy;
}
}
ipx++;
}
}
/* ----------------------------------------------------------------------
charge assignment into rho1d
dx,dy,dz = distance of particle from "lower left" grid point
------------------------------------------------------------------------- */
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::compute_rho1d(const int i, const FFT_SCALAR &dx, const FFT_SCALAR &dy,
const FFT_SCALAR &dz) const
{
int k,l;
FFT_SCALAR r1,r2,r3;
for (k = (1-order)/2; k <= order/2; k++) {
r1 = r2 = r3 = ZEROF;
for (l = order-1; l >= 0; l--) {
r1 = d_rho_coeff(l,k-(1-order)/2) + r1*dx;
r2 = d_rho_coeff(l,k-(1-order)/2) + r2*dy;
r3 = d_rho_coeff(l,k-(1-order)/2) + r3*dz;
}
d_rho1d(i,k+order/2,0) = r1;
d_rho1d(i,k+order/2,1) = r2;
d_rho1d(i,k+order/2,2) = r3;
}
}
/* ----------------------------------------------------------------------
generate coeffients for the weight function of order n
(n-1)
Wn(x) = Sum wn(k,x) , Sum is over every other integer
k=-(n-1)
For k=-(n-1),-(n-1)+2, ....., (n-1)-2,n-1
k is odd integers if n is even and even integers if n is odd
---
| n-1
| Sum a(l,j)*(x-k/2)**l if abs(x-k/2) < 1/2
wn(k,x) = < l=0
|
| 0 otherwise
---
a coeffients are packed into the array rho_coeff to eliminate zeros
rho_coeff(l,((k+mod(n+1,2))/2) = a(l,k)
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::compute_rho_coeff()
{
int j,k,l,m;
FFT_SCALAR s;
//FFT_SCALAR **a;
//memory->create2d_offset(a,order,-order,order,"pppm:a");
FFT_SCALAR a[order][2*order+1];
for (k = 0; k <= 2*order; k++)
for (l = 0; l < order; l++)
a[l][k] = 0.0;
a[0][order] = 1.0;
for (j = 1; j < order; j++) {
for (k = -j; k <= j; k += 2) {
s = 0.0;
for (l = 0; l < j; l++) {
a[l+1][k+order] = (a[l][k+1+order]-a[l][k-1+order]) / (l+1);
#ifdef FFT_SINGLE
s += powf(0.5,(float) l+1) *
(a[l][k-1+order] + powf(-1.0,(float) l) * a[l][k+1+order]) / (l+1);
#else
s += pow(0.5,(double) l+1) *
(a[l][k-1+order] + pow(-1.0,(double) l) * a[l][k+1+order]) / (l+1);
#endif
}
a[0][k+order] = s;
}
}
m = (1-order)/2;
for (k = -(order-1); k < order; k += 2) {
for (l = 0; l < order; l++)
h_rho_coeff(l,m-(1-order)/2) = a[l][k+order];
m++;
}
//memory->destroy2d_offset(a,-order);
}
/* ----------------------------------------------------------------------
Slab-geometry correction term to dampen inter-slab interactions between
periodically repeating slabs. Yields good approximation to 2D Ewald if
adequate empty space is left between repeating slabs (J. Chem. Phys.
111, 3155). Slabs defined here to be parallel to the xy plane. Also
extended to non-neutral systems (J. Chem. Phys. 131, 094107).
------------------------------------------------------------------------- */
template<class DeviceType>
void PPPMKokkos<DeviceType>::slabcorr()
{
// compute local contribution to global dipole moment
zprd = domain->zprd;
int nlocal = atomKK->nlocal;
double dipole = 0.0;
copymode = 1;
Kokkos::parallel_reduce(Kokkos::RangePolicy<DeviceType, TagPPPM_slabcorr1>(0,nlocal),*this,dipole);
DeviceType::fence();
copymode = 0;
// sum local contributions to get global dipole moment
dipole_all;
MPI_Allreduce(&dipole,&dipole_all,1,MPI_DOUBLE,MPI_SUM,world);
// need to make non-neutral systems and/or
// per-atomKK energy translationally invariant
dipole_r2 = 0.0;
if (eflag_atom || fabs(qsum) > SMALL) {
copymode = 1;
Kokkos::parallel_reduce(Kokkos::RangePolicy<DeviceType, TagPPPM_slabcorr2>(0,nlocal),*this,dipole_r2);
DeviceType::fence();
copymode = 0;
// sum local contributions
double tmp;
MPI_Allreduce(&dipole_r2,&tmp,1,MPI_DOUBLE,MPI_SUM,world);
dipole_r2 = tmp;
}
// compute corrections
const double e_slabcorr = MY_2PI*(dipole_all*dipole_all -
qsum*dipole_r2 - qsum*qsum*zprd*zprd/12.0)/volume;
qscale = qqrd2e * scale;
if (eflag_global) energy += qscale * e_slabcorr;
// per-atomKK energy
if (eflag_atom) {
efact = qscale * MY_2PI/volume;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_slabcorr3>(0,nlocal),*this);
DeviceType::fence();
copymode = 0;
}
// add on force corrections
ffact = qscale * (-4.0*MY_PI/volume);
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_slabcorr4>(0,nlocal),*this);
DeviceType::fence();
copymode = 0;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_slabcorr1, const int &i, double &dipole) const
{
dipole += q[i]*x(i,2);
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_slabcorr2, const int &i, double &dipole_r2) const
{
dipole_r2 += q[i]*x(i,2)*x(i,2);
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_slabcorr3, const int &i) const
{
d_eatom[i] += efact * q[i]*(x(i,2)*dipole_all - 0.5*(dipole_r2 +
qsum*x(i,2)*x(i,2)) - qsum*zprd*zprd/12.0);
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_slabcorr4, const int &i) const
{
f(i,2) += ffact * q[i]*(dipole_all - qsum*x(i,2));
}
/* ----------------------------------------------------------------------
perform and time the 1d FFTs required for N timesteps
------------------------------------------------------------------------- */
template<class DeviceType>
int PPPMKokkos<DeviceType>::timing_1d(int n, double &time1d)
{
double time1,time2;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_timing_zero>(0,2*nfft_both),*this);
DeviceType::fence();
copymode = 0;
MPI_Barrier(world);
time1 = MPI_Wtime();
for (int i = 0; i < n; i++) {
fft1->timing1d(work1,nfft_both,1);
fft2->timing1d(work1,nfft_both,-1);
fft2->timing1d(work1,nfft_both,-1);
fft2->timing1d(work1,nfft_both,-1);
}
MPI_Barrier(world);
time2 = MPI_Wtime();
time1d = time2 - time1;
return 4;
}
template<class DeviceType>
KOKKOS_INLINE_FUNCTION
void PPPMKokkos<DeviceType>::operator()(TagPPPM_timing_zero, const int &i) const
{
d_work1[i] = ZEROF;
}
/* ----------------------------------------------------------------------
perform and time the 3d FFTs required for N timesteps
------------------------------------------------------------------------- */
template<class DeviceType>
int PPPMKokkos<DeviceType>::timing_3d(int n, double &time3d)
{
double time1,time2;
copymode = 1;
Kokkos::parallel_for(Kokkos::RangePolicy<DeviceType, TagPPPM_timing_zero>(0,2*nfft_both),*this);
DeviceType::fence();
copymode = 0;
MPI_Barrier(world);
time1 = MPI_Wtime();
for (int i = 0; i < n; i++) {
fft1->compute(work1,work1,1);
fft2->compute(work1,work1,-1);
fft2->compute(work1,work1,-1);
fft2->compute(work1,work1,-1);
}
MPI_Barrier(world);
time2 = MPI_Wtime();
time3d = time2 - time1;
return 4;
}
/* ----------------------------------------------------------------------
memory usage of local arrays
------------------------------------------------------------------------- */
template<class DeviceType>
double PPPMKokkos<DeviceType>::memory_usage()
{
double bytes = nmax*3 * sizeof(double);
int nbrick = (nxhi_out-nxlo_out+1) * (nyhi_out-nylo_out+1) *
(nzhi_out-nzlo_out+1);
bytes += 4 * nbrick * sizeof(FFT_SCALAR);
if (triclinic) bytes += 3 * nfft_both * sizeof(double);
bytes += 6 * nfft_both * sizeof(double);
bytes += nfft_both * sizeof(double);
bytes += nfft_both*5 * sizeof(FFT_SCALAR);
if (peratom_allocate_flag)
bytes += 6 * nbrick * sizeof(FFT_SCALAR);
bytes += cg->memory_usage();
return bytes;
}
namespace LAMMPS_NS {
template class PPPMKokkos<LMPDeviceType>;
#ifdef KOKKOS_HAVE_CUDA
template class PPPMKokkos<LMPHostType>;
#endif
}
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