Homec4science
Diffusion lammps (lammm-master-deprecated) Browse

lammps/doc/Manual.html
b704a82dafc5lammm-master-deprecated

Last Change
Raw File

Manual.html
View Options

<HTML>
<CENTER><A HREF = "http://lammps.sandia.gov">LAMMPS WWW Site</A> - <A HREF = "Manual.html">LAMMPS Documentation</A> - <A HREF = "Section_commands.html#comm">LAMMPS Commands</A>
</CENTER>
<HR>
<H1></H1>
<CENTER><H3>LAMMPS Documentation
</H3></CENTER>
<CENTER>(22 June 2007 version of LAMMPS)
</CENTER>
<P>LAMMPS stands for Large-scale Atomic/Molecular Massively Parallel
Simulator.
</P>
<P>LAMMPS is a classical molecular dynamics simulation code designed to
run efficiently on parallel computers. It was developed at Sandia
National Laboratories, a US Department of Energy facility, with
funding from the DOE. It is an open-source code, distributed freely
under the terms of the GNU Public License (GPL).
</P>
<P>The developers of LAMMPS are <A HREF = "http://www.cs.sandia.gov/~sjplimp">Steve Plimpton</A>, Paul Crozier, and
Aidan Thompson who can be contacted at sjplimp,pscrozi,athomps at
sandia.gov. The <A HREF = "http://lammps.sandia.gov">LAMMPS WWW Site</A> at http://lammps.sandia.gov has
more information about the code and its uses.
</P>
<HR>
<P>The LAMMPS documentation is organized into the following sections. If
you find errors or omissions in this manual or have suggestions for
useful information to add, please send an email to the developers so
we can improve the LAMMPS documentation.
</P>
<P><A HREF = "Manual.pdf">PDF file</A> of the entire manual, generated by
<A HREF = "http://www.easysw.com/htmldoc">htmldoc</A>
</P>
<OL><LI><A HREF = "Section_intro.html">Introduction</A>
<UL> 1.1 <A HREF = "Section_intro.html#1_1">What is LAMMPS</A>
<BR>
1.2 <A HREF = "Section_intro.html#1_2">LAMMPS features</A>
<BR>
1.3 <A HREF = "Section_intro.html#1_3">LAMMPS non-features</A>
<BR>
1.4 <A HREF = "Section_intro.html#1_4">Open source distribution</A>
<BR>
1.5 <A HREF = "Section_intro.html#1_5">Acknowledgments and citations</A>
<BR></UL>
<LI><A HREF = "Section_start.html">Getting started</A>
<UL> 2.1 <A HREF = "Section_start.html#2_1">What's in the LAMMPS distribution</A>
<BR>
2.2 <A HREF = "Section_start.html#2_2">Making LAMMPS</A>
<BR>
2.3 <A HREF = "Section_start.html#2_3">Making LAMMPS with optional packages</A>
<BR>
2.4 <A HREF = "Section_start.html#2_4">Building LAMMPS as a library</A>
<BR>
2.5 <A HREF = "Section_start.html#2_5">Running LAMMPS</A>
<BR>
2.6 <A HREF = "Section_start.html#2_6">Command-line options</A>
<BR>
2.7 <A HREF = "Section_start.html#2_7">Screen output</A>
<BR>
2.8 <A HREF = "Section_start.html#2_8">Tips for users of previous versions</A>
<BR></UL>
<LI><A HREF = "Section_commands.html">Commands</A>
<UL> 3.1 <A HREF = "Section_commands.html#3_1">LAMMPS input script</A>
<BR>
3.2 <A HREF = "Section_commands.html#3_2">Parsing rules</A>
<BR>
3.3 <A HREF = "Section_commands.html#3_3">Input script structure</A>
<BR>
3.4 <A HREF = "Section_commands.html#3_4">Commands listed by category</A>
<BR>
3.5 <A HREF = "Section_commands.html#3_5">Commands listed alphabetically</A>
<BR></UL>
<LI><A HREF = "Section_howto.html">How-to discussions</A>
<UL> 4.1 <A HREF = "Section_howto.html#4_1">Restarting a simulation</A>
<BR>
4.2 <A HREF = "Section_howto.html#4_2">2d simulations</A>
<BR>
4.3 <A HREF = "Section_howto.html#4_3">CHARMM and AMBER force fields</A>
<BR>
4.4 <A HREF = "Section_howto.html#4_4">Running multiple simulations from one input script</A>
<BR>
4.5 <A HREF = "Section_howto.html#4_5">Parallel tempering</A>
<BR>
4.6 <A HREF = "Section_howto.html#4_6">Granular models</A>
<BR>
4.7 <A HREF = "Section_howto.html#4_7">TIP3P water model</A>
<BR>
4.8 <A HREF = "Section_howto.html#4_8">TIP4P water model</A>
<BR>
4.9 <A HREF = "Section_howto.html#4_9">SPC water model</A>
<BR>
4.10 <A HREF = "Section_howto.html#4_10">Coupling LAMMPS to other codes</A>
<BR>
4.11 <A HREF = "Section_howto.html#4_11">Visualizing LAMMPS snapshots</A>
<BR></UL>
<LI><A HREF = "Section_example.html">Example problems</A>
<LI><A HREF = "Section_perf.html">Performance & scalability</A>
<LI><A HREF = "Section_tools.html">Additional tools</A>
<LI><A HREF = "Section_modify.html">Modifying & Extending LAMMPS</A>
<LI><A HREF = "Section_errors.html">Errors</A>
<UL> 9.1 <A HREF = "Section_errors.html#9_1">Common problems</A>
<BR>
9.2 <A HREF = "Section_errors.html#9_2">Reporting bugs</A>
<BR>
9.3 <A HREF = "Section_errors.html#9_3">Error & warning messages</A>
<BR></UL>
<LI><A HREF = "Section_history.html">Future and history</A>
<UL> 10.1 <A HREF = "Section_history.html#10_1">Coming attractions</A>
<BR>
10.2 <A HREF = "Section_history.html#10_2">Past versions</A>
<BR></UL>
</OL>
</HTML>
c4science · Help