Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F91886103
compute_dpd.html
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Fri, Nov 15, 11:36
Size
8 KB
Mime Type
text/html
Expires
Sun, Nov 17, 11:36 (2 d)
Engine
blob
Format
Raw Data
Handle
22342007
Attached To
rLAMMPS lammps
compute_dpd.html
View Options
<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!-->
<html
class=
"no-js"
lang=
"en"
>
<!--<![endif]-->
<head>
<meta
charset=
"utf-8"
>
<meta
name=
"viewport"
content=
"width=device-width, initial-scale=1.0"
>
<title>
compute dpd command
—
LAMMPS documentation
</title>
<link
rel=
"stylesheet"
href=
"_static/css/theme.css"
type=
"text/css"
/>
<link
rel=
"stylesheet"
href=
"_static/sphinxcontrib-images/LightBox2/lightbox2/css/lightbox.css"
type=
"text/css"
/>
<link
rel=
"top"
title=
"LAMMPS documentation"
href=
"index.html"
/>
<script
src=
"_static/js/modernizr.min.js"
></script>
</head>
<body
class=
"wy-body-for-nav"
role=
"document"
>
<div
class=
"wy-grid-for-nav"
>
<nav
data-toggle=
"wy-nav-shift"
class=
"wy-nav-side"
>
<div
class=
"wy-side-nav-search"
>
<a
href=
"Manual.html"
class=
"icon icon-home"
>
LAMMPS
</a>
<div
role=
"search"
>
<form
id=
"rtd-search-form"
class=
"wy-form"
action=
"search.html"
method=
"get"
>
<input
type=
"text"
name=
"q"
placeholder=
"Search docs"
/>
<input
type=
"hidden"
name=
"check_keywords"
value=
"yes"
/>
<input
type=
"hidden"
name=
"area"
value=
"default"
/>
</form>
</div>
</div>
<div
class=
"wy-menu wy-menu-vertical"
data-spy=
"affix"
role=
"navigation"
aria-label=
"main navigation"
>
<ul>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_intro.html"
>
1. Introduction
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_start.html"
>
2. Getting Started
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_commands.html"
>
3. Commands
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_packages.html"
>
4. Packages
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_accelerate.html"
>
5. Accelerating LAMMPS performance
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_howto.html"
>
6. How-to discussions
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_example.html"
>
7. Example problems
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_perf.html"
>
8. Performance
&
scalability
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_tools.html"
>
9. Additional tools
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_modify.html"
>
10. Modifying
&
extending LAMMPS
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_python.html"
>
11. Python interface to LAMMPS
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_errors.html"
>
12. Errors
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_history.html"
>
13. Future and history
</a></li>
</ul>
</div>
</nav>
<section
data-toggle=
"wy-nav-shift"
class=
"wy-nav-content-wrap"
>
<nav
class=
"wy-nav-top"
role=
"navigation"
aria-label=
"top navigation"
>
<i
data-toggle=
"wy-nav-top"
class=
"fa fa-bars"
></i>
<a
href=
"Manual.html"
>
LAMMPS
</a>
</nav>
<div
class=
"wy-nav-content"
>
<div
class=
"rst-content"
>
<div
role=
"navigation"
aria-label=
"breadcrumbs navigation"
>
<ul
class=
"wy-breadcrumbs"
>
<li><a
href=
"Manual.html"
>
Docs
</a>
»
</li>
<li>
compute dpd command
</li>
<li
class=
"wy-breadcrumbs-aside"
>
<a
href=
"http://lammps.sandia.gov"
>
Website
</a>
<a
href=
"Section_commands.html#comm"
>
Commands
</a>
</li>
</ul>
<hr/>
</div>
<div
role=
"main"
class=
"document"
itemscope=
"itemscope"
itemtype=
"http://schema.org/Article"
>
<div
itemprop=
"articleBody"
>
<div
class=
"section"
id=
"compute-dpd-command"
>
<span
id=
"index-0"
></span><h1>
compute dpd command
<a
class=
"headerlink"
href=
"#compute-dpd-command"
title=
"Permalink to this headline"
>
¶
</a></h1>
<div
class=
"section"
id=
"syntax"
>
<h2>
Syntax
<a
class=
"headerlink"
href=
"#syntax"
title=
"Permalink to this headline"
>
¶
</a></h2>
<div
class=
"highlight-python"
><div
class=
"highlight"
><pre>
compute ID group-ID dpd
</pre></div>
</div>
<ul
class=
"simple"
>
<li>
ID, group-ID are documented in
<a
class=
"reference internal"
href=
"compute.html"
><em>
compute
</em></a>
command
</li>
<li>
dpd = style name of this compute command
</li>
</ul>
</div>
<div
class=
"section"
id=
"examples"
>
<h2>
Examples
<a
class=
"headerlink"
href=
"#examples"
title=
"Permalink to this headline"
>
¶
</a></h2>
<div
class=
"highlight-python"
><div
class=
"highlight"
><pre>
compute 1 all dpd
</pre></div>
</div>
</div>
<div
class=
"section"
id=
"description"
>
<h2>
Description
<a
class=
"headerlink"
href=
"#description"
title=
"Permalink to this headline"
>
¶
</a></h2>
<p>
Define a computation that accumulates the total internal conductive
energy (U_cond), the total internal mechanical energy (U_mech), the
total internal energy (U) and the
<em>
harmonic
</em>
average of the internal
temperature (dpdTheta) for the entire system of particles. See the
<a
class=
"reference internal"
href=
"compute_dpd_atom.html"
><em>
compute dpd/atom
</em></a>
command if you want
per-particle internal energies and internal temperatures.
</p>
<p>
The system internal properties are computed according to the following
relations:
</p>
<img
alt=
"_images/compute_dpd.jpg"
class=
"align-center"
src=
"_images/compute_dpd.jpg"
/>
<p>
where N is the number of particles in the system
</p>
<hr
class=
"docutils"
/>
<p><strong>
Output info:
</strong></p>
<p>
This compute calculates a global vector of length 5 (U_cond, U_mech,
U, dpdTheta, N_particles), which can be accessed by indices 1-5. See
<a
class=
"reference internal"
href=
"Section_howto.html#howto-15"
><span>
this section
</span></a>
for an overview of LAMMPS
output options.
</p>
<p>
The vector values will be in energy and temperature
<a
class=
"reference internal"
href=
"units.html"
><em>
units
</em></a>
.
</p>
</div>
<div
class=
"section"
id=
"restrictions"
>
<h2>
Restrictions
<a
class=
"headerlink"
href=
"#restrictions"
title=
"Permalink to this headline"
>
¶
</a></h2>
<p>
The compute
<em>
dpd
</em>
is only available if LAMMPS is built with the
USER-DPD package and requires the
<a
class=
"reference internal"
href=
"atom_style.html"
><em>
atom_style dpd
</em></a>
.
</p>
</div>
<div
class=
"section"
id=
"related-commands"
>
<h2>
Related commands
<a
class=
"headerlink"
href=
"#related-commands"
title=
"Permalink to this headline"
>
¶
</a></h2>
<p><a
class=
"reference internal"
href=
"compute_dpd_atom.html"
><em>
compute dpd/atom
</em></a>
,
<a
class=
"reference internal"
href=
"thermo_style.html"
><em>
thermo_style
</em></a></p>
<p><strong>
Default:
</strong>
none
</p>
<hr
class=
"docutils"
/>
<p
id=
"larentzos"
><strong>
(Larentzos)
</strong>
J.P. Larentzos, J.K. Brennan, J.D. Moore, and
W.D. Mattson,
“
LAMMPS Implementation of Constant Energy Dissipative
Particle Dynamics (DPD-E)
”
, ARL-TR-6863, U.S. Army Research
Laboratory, Aberdeen Proving Ground, MD (2014).
</p>
</div>
</div>
</div>
</div>
<footer>
<hr/>
<div
role=
"contentinfo"
>
<p>
©
Copyright 2013 Sandia Corporation.
</p>
</div>
Built with
<a
href=
"http://sphinx-doc.org/"
>
Sphinx
</a>
using a
<a
href=
"https://github.com/snide/sphinx_rtd_theme"
>
theme
</a>
provided by
<a
href=
"https://readthedocs.org"
>
Read the Docs
</a>
.
</footer>
</div>
</div>
</section>
</div>
<script
type=
"text/javascript"
>
var
DOCUMENTATION_OPTIONS
=
{
URL_ROOT
:
'./'
,
VERSION
:
''
,
COLLAPSE_INDEX
:
false
,
FILE_SUFFIX
:
'.html'
,
HAS_SOURCE
:
true
};
</script>
<script
type=
"text/javascript"
src=
"_static/jquery.js"
></script>
<script
type=
"text/javascript"
src=
"_static/underscore.js"
></script>
<script
type=
"text/javascript"
src=
"_static/doctools.js"
></script>
<script
type=
"text/javascript"
src=
"https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2/js/jquery-1.11.0.min.js"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2/js/lightbox.min.js"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2-customize/jquery-noconflict.js"
></script>
<script
type=
"text/javascript"
src=
"_static/js/theme.js"
></script>
<script
type=
"text/javascript"
>
jQuery
(
function
()
{
SphinxRtdTheme
.
StickyNav
.
enable
();
});
</script>
</body>
</html>
Event Timeline
Log In to Comment