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rLAMMPS lammps
pair_brownian.html
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<HTML>
<CENTER><A
HREF =
"http://lammps.sandia.gov"
>
LAMMPS WWW Site
</A>
-
<A
HREF =
"Manual.html"
>
LAMMPS Documentation
</A>
-
<A
HREF =
"Section_commands.html#comm"
>
LAMMPS Commands
</A>
</CENTER>
<HR>
<H3>
pair_style brownian command
</H3>
<H3>
pair_style brownian/omp command
</H3>
<H3>
pair_style brownian/poly command
</H3>
<H3>
pair_style brownian/poly/omp command
</H3>
<P><B>
Syntax:
</B>
</P>
<PRE>
pair_style style mu flaglog flagfld cutinner cutoff t_target seed flagHI flagVF
</PRE>
<UL><LI>
style =
<I>
brownian
</I>
or
<I>
brownian/poly
</I>
<LI>
mu = dynamic viscosity (dynamic viscosity units)
<LI>
flaglog = 0/1 log terms in the lubrication approximation on/off
<LI>
flagfld = 0/1 to include/exclude Fast Lubrication Dynamics effects
<LI>
cutinner = inner cutoff distance (distance units)
<LI>
cutoff = outer cutoff for interactions (distance units)
<LI>
t_target = target temp of the system (temperature units)
<LI>
seed = seed for the random number generator (positive integer)
<LI>
flagHI (optional) = 0/1 to include/exclude 1/r hydrodynamic interactions
<LI>
flagVF (optional) = 0/1 to include/exclude volume fraction corrections in the long-range isotropic terms
</UL>
<P><B>
Examples:
</B>
</P>
<PRE>
pair_style brownian 1.5 1 1 2.01 2.5 2.0 5878567 (assuming radius = 1)
pair_coeff 1 1 2.05 2.8
pair_coeff * *
</PRE>
<P><B>
Description:
</B>
</P>
<P>
Styles
<I>
brownian
</I>
and
<I>
brownain/poly
</I>
compute Brownian forces and
torques on finite-size particles. The former requires monodisperse
spherical particles; the latter allows for polydisperse spherical
particles.
</P>
<P>
These pair styles are designed to be used with either the
<A
HREF =
"pair_lubricate.html"
>
pair_style
lubricate
</A>
or
<A
HREF =
"pair_lubricateU.html"
>
pair_style
lubricateU
</A>
commands to provide thermostatting
when dissipative lubrication forces are acting. Thus the parameters
<I>
mu
</I>
,
<I>
flaglog
</I>
,
<I>
flagfld
</I>
,
<I>
cutinner
</I>
, and
<I>
cutoff
</I>
should be
specified consistent with the settings in the lubrication pair styles.
For details, refer to either of the lubrication pair styles.
</P>
<P>
The
<I>
t_target
</I>
setting is used to specify the target temperature of
the system. The random number
<I>
seed
</I>
is used to generate random
numbers for the thermostatting procedure.
</P>
<P>
The
<I>
flagHI
</I>
and
<I>
flagVF
</I>
settings are optional. Neither should be
used, or both must be defined.
</P>
<HR>
<P>
The following coefficients must be defined for each pair of atoms
types via the
<A
HREF =
"pair_coeff.html"
>
pair_coeff
</A>
command as in the examples
above, or in the data file or restart files read by the
<A
HREF =
"read_data.html"
>
read_data
</A>
or
<A
HREF =
"read_restart.html"
>
read_restart
</A>
commands, or by mixing as described below:
</P>
<UL><LI>
cutinner (distance units)
<LI>
cutoff (distance units)
</UL>
<P>
The two coefficients are optional. If neither is specified, the two
cutoffs specified in the pair_style command are used. Otherwise both
must be specified.
</P>
<HR>
<P>
Styles with a
<I>
cuda
</I>
,
<I>
gpu
</I>
,
<I>
intel
</I>
,
<I>
kk
</I>
,
<I>
omp
</I>
, or
<I>
opt
</I>
suffix are
functionally the same as the corresponding style without the suffix.
They have been optimized to run faster, depending on your available
hardware, as discussed in
<A
HREF =
"Section_accelerate.html"
>
this section
</A>
of
the manual. The accelerated styles take the same arguments and should
produce the same results, except for round-off and precision issues.
</P>
<P>
These accelerated styles are part of the USER-CUDA, GPU, USER-INTEL,
KOKKOS, USER-OMP and OPT packages, respectively. They are only
enabled if LAMMPS was built with those packages. See the
<A
HREF =
"Section_start.html#start_3"
>
Making
LAMMPS
</A>
section for more info.
</P>
<P>
You can specify the accelerated styles explicitly in your input script
by including their suffix, or you can use the
<A
HREF =
"Section_start.html#start_7"
>
-suffix command-line
switch
</A>
when you invoke LAMMPS, or you can
use the
<A
HREF =
"suffix.html"
>
suffix
</A>
command in your input script.
</P>
<P>
See
<A
HREF =
"Section_accelerate.html"
>
this section
</A>
of the manual for more
instructions on how to use the accelerated styles effectively.
</P>
<HR>
<P><B>
Mixing, shift, table, tail correction, restart, rRESPA info
</B>
:
</P>
<P>
For atom type pairs I,J and I != J, the two cutoff distances for this
pair style can be mixed. The default mix value is
<I>
geometric
</I>
. See
the "pair_modify" command for details.
</P>
<P>
This pair style does not support the
<A
HREF =
"pair_modify.html"
>
pair_modify
</A>
shift option for the energy of the pair interaction.
</P>
<P>
The
<A
HREF =
"pair_modify.html"
>
pair_modify
</A>
table option is not relevant
for this pair style.
</P>
<P>
This pair style does not support the
<A
HREF =
"pair_modify.html"
>
pair_modify
</A>
tail option for adding long-range tail corrections to energy and
pressure.
</P>
<P>
This pair style writes its information to
<A
HREF =
"restart.html"
>
binary restart
files
</A>
, so pair_style and pair_coeff commands do not need
to be specified in an input script that reads a restart file.
</P>
<P>
This pair style can only be used via the
<I>
pair
</I>
keyword of the
<A
HREF =
"run_style.html"
>
run_style respa
</A>
command. It does not support the
<I>
inner
</I>
,
<I>
middle
</I>
,
<I>
outer
</I>
keywords.
</P>
<HR>
<P><B>
Restrictions:
</B>
</P>
<P>
These styles are part of the FLD package. They are only enabled if
LAMMPS was built with that package. See the
<A
HREF =
"Section_start.html#2_3"
>
Making
LAMMPS
</A>
section for more info.
</P>
<P>
Only spherical monodisperse particles are allowed for pair_style
brownian.
</P>
<P>
Only spherical particles are allowed for pair_style brownian/poly.
</P>
<P><B>
Related commands:
</B>
</P>
<P><A
HREF =
"pair_coeff.html"
>
pair_coeff
</A>
,
<A
HREF =
"pair_lubricate.html"
>
pair_style
lubricate
</A>
,
<A
HREF =
"pair_lubricateU.html"
>
pair_style
lubricateU
</A>
</P>
<P><B>
Default:
</B>
</P>
<P>
The default settings for the optional args are flagHI = 1 and flagVF =
1.
</P>
</HTML>
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