<p>Define a computation that calculates the center-of-mass for multiple
chunks of atoms.</p>
<p>In LAMMPS, chunks are collections of atoms defined by a <aclass="reference internal"href="compute_chunk_atom.html"><spanclass="doc">compute chunk/atom</span></a> command, which assigns each atom
to a single chunk (or no chunk). The ID for this command is specified
as chunkID. For example, a single chunk could be the atoms in a
molecule or atoms in a spatial bin. See the <aclass="reference internal"href="compute_chunk_atom.html"><spanclass="doc">compute chunk/atom</span></a> doc page and <aclass="reference internal"href="Section_howto.html#howto-23"><spanclass="std std-ref">Section 6.23</span></a> for details of how chunks can be
defined and examples of how they can be used to measure properties of
a system.</p>
<p>This compute calculates the x,y,z coordinates of the center-of-mass
for each chunk, which includes all effects due to atoms passing thru
periodic boundaries.</p>
<p>Note that only atoms in the specified group contribute to the
calculation. The <aclass="reference internal"href="compute_chunk_atom.html"><spanclass="doc">compute chunk/atom</span></a> command
defines its own group; atoms will have a chunk ID = 0 if they are not
in that group, signifying they are not assigned to a chunk, and will
thus also not contribute to this calculation. You can specify the
“all” group for this command if you simply want to include atoms with
non-zero chunk IDs.</p>
<divclass="admonition note">
<pclass="first admonition-title">Note</p>
<pclass="last">The coordinates of an atom contribute to the chunk’s
center-of-mass in “unwrapped” form, by using the image flags
associated with each atom. See the <aclass="reference internal"href="dump.html"><spanclass="doc">dump custom</span></a> command
for a discussion of “unwrapped” coordinates. See the Atoms section of
the <aclass="reference internal"href="read_data.html"><spanclass="doc">read_data</span></a> command for a discussion of image flags
and how they are set for each atom. You can reset the image flags
(e.g. to 0) before invoking this compute by using the <aclass="reference internal"href="set.html"><spanclass="doc">set image</span></a> command.</p>
</div>
<p>The simplest way to output the results of the compute com/chunk
calculation to a file is to use the <aclass="reference internal"href="fix_ave_time.html"><spanclass="doc">fix ave/time</span></a>
<p>This compute calculates a global array where the number of rows = the
number of chunks <em>Nchunk</em> as calculated by the specified <aclass="reference internal"href="compute_chunk_atom.html"><spanclass="doc">compute chunk/atom</span></a> command. The number of columns =
3 for the x,y,z center-of-mass coordinates of each chunk. These
values can be accessed by any command that uses global array values
from a compute as input. See <aclass="reference internal"href="Section_howto.html#howto-15"><spanclass="std std-ref">Section 6.15</span></a> for an overview of LAMMPS output
options.</p>
<p>The array values are “intensive”. The array values will be in
Built with <ahref="http://sphinx-doc.org/">Sphinx</a> using a <ahref="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <ahref="https://readthedocs.org">Read the Docs</a>.