in.obstacle
775e8f3cc8f5lammm-master-deprecated

in.obstacle
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			# 2d LJ obstacle flow

			dimension 2
			boundary p s p

			atom_style atomic
			neighbor 0.3 bin
			neigh_modify delay 5

			# create geometry

			lattice hex 0.7
			region box block 0 40 0 10 -0.25 0.25
			create_box 3 box
			create_atoms 1 box

			mass 1 1.0
			mass 2 1.0
			mass 3 1.0

			# LJ potentials

			pair_style lj/cut 1.12246
			pair_coeff * * 1.0 1.0 1.12246

			# define groups

			region 1 block INF INF INF 1.25 INF INF
			group lower region 1
			region 2 block INF INF 8.75 INF INF INF
			group upper region 2
			group boundary union lower upper
			group flow subtract all boundary

			set group lower type 2
			set group upper type 3

			# initial velocities

			compute mobile flow temp
			velocity flow create 1.0 482748 temp mobile
			fix 1 all nve
			fix 2 flow temp/rescale 200 1.0 1.0 0.02 1.0
			fix_modify 2 temp mobile

			# Poiselle flow

			velocity boundary set 0.0 0.0 0.0
			fix 3 lower setforce 0.0 0.0 0.0
			fix 4 upper setforce 0.0 NULL 0.0
			fix 5 upper aveforce 0.0 -0.5 0.0
			fix 6 flow addforce 1.0 0.0 0.0

			# 2 obstacles

			region void1 sphere 10 4 0 3
			delete_atoms region void1
			region void2 sphere 20 7 0 3
			delete_atoms region void2

			fix 7 flow indent 100 sphere 10 4 0 4
			fix 8 flow indent 100 sphere 20 7 0 4
			fix 9 all enforce2d

			# Run

			timestep 0.003
			thermo 1000
			thermo_modify temp mobile

			#dump 1 all atom 100 dump.obstacle

			#dump 2 all image 500 image.*.jpg type type &
			# zoom 1.6 adiam 1.5
			#dump_modify 2 pad 5

			#dump 3 all movie 500 movie.mpg type type &
			# zoom 1.6 adiam 1.5
			#dump_modify 3 pad 5

			run 25000