sputter.vmd
4e62aa6510fclammm-master-deprecated

sputter.vmd
View Options

			#!/usr/local/bin/vmd
			set viewplist {}
			set fixedlist {}

			# Display settings
			display eyesep 0.065000
			display focallength 2.000000
			display height 6.000000
			display distance -2.000000
			display projection Orthographic
			display nearclip set 0.000100
			display farclip set 10.000000
			display depthcue on
			display cuestart 0.500000
			display cueend 10.000000
			display cuedensity 0.400000
			display cuemode Exp2

			package require topotools
			set thismol [topo readvarxyz sputter.xyz]
			pbc set {33.592 33.592 67.1838 90.0 90.0 90.0} -all
			pbc box

			graphics 0 material Transparent
			graphics 0 color white
			graphics 0 sphere {16.796 16.796 69.00} radius 16.796

			mol delrep 0 top
			mol representation Points 10.000000
			mol color Name
			mol selection {(all) and user > 0}
			mol material Opaque
			mol addrep top
			mol selupdate 0 top 1
			set viewpoints([molinfo top]) {{{1 0 0 -8.21226} {0 1 0 -8.41433} {0 0 1 -4.82487} {0 0 0 1}} {{0.943765 -0.330613 -0.00163335 0} {0.0501411 0.138246 0.989128 0} {-0.326792 -0.933587 0.14705 0} {0 0 0 1}} {{0.0368523 0 0 0} {0 0.0368523 0 0} {0 0 0.0368523 0} {0 0 0 1}} {{1 0 0 0.02} {0 1 0 -0.88} {0 0 1 0} {0 0 0 1}}}
			lappend viewplist [molinfo top]
			set topmol [molinfo top]
			# done with molecule 0
			foreach v $viewplist {
			molinfo $v set {center_matrix rotate_matrix scale_matrix global_matrix} $viewpoints($v)
			}
			foreach v $fixedlist {
			molinfo $v set fixed 1
			}
			unset viewplist
			unset fixedlist
			mol top $topmol
			unset topmol

			animate goto 0
			animate speed 0.7
			animate forward