in.pppm_disp
8465b417f6b9lammm-master-deprecated

in.pppm_disp
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			# Solvated 5-mer peptide

			units real
			atom_style full
			special_bonds lj/coul 0.0 0.0 1.0

			pair_style lj/long/coul/long long long 8.0
			bond_style harmonic
			angle_style charmm
			dihedral_style charmm
			improper_style harmonic
			kspace_style pppm/disp 0.00001
			kspace_modify collective yes
			#kspace_modify collective no

			read_data data.pppm_disp
			replicate 2 2 2

			neighbor 1.5 bin
			neigh_modify delay 2

			timestep 2.0

			thermo_style multi
			thermo 50

			fix 1 all nvt temp 275.0 275.0 100.0 tchain 1
			fix 2 all shake 0.0001 10 100 b 4 6 8 10 12 14 18 a 31

			group peptide type <= 12

			#dump 1 peptide atom 10 dump.peptide

			#dump 1 peptide image 25 image.*.jpg type type &
			# axes yes 0.8 0.02 view 60 -30 bond atom 0.5
			#dump_modify 1 pad 3

			#compute bnd all property/local btype batom1 batom2
			#dump 2 peptide local 300 dump.bond index c_bnd[1] c_bnd[2] c_bnd[3]

			run 300