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lammps/test/lj_bonds.neigh_dyn.log
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lj_bonds.neigh_dyn.log
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LAMMPS (25 Oct 2011)
using 1 OpenMP thread(s) per MPI task
package gpu force/neigh 0 0 -1
units lj
atom_style molecular
newton off
pair_style lj/cut/gpu 2.5
bond_style harmonic
read_data lj_bonds.data
3 = max bonds/atom
orthogonal box = (0 0 0) to (8.39798 8.39798 8.39798)
1 by 1 by 3 processor grid
500 atoms
500 velocities
419 bonds
3 = max # of 1-2 neighbors
6 = max # of 1-3 neighbors
14 = max # of 1-4 neighbors
17 = max # of special neighbors
pair_coeff 1 1 1.0 1.0 2.5
bond_coeff 1 80.0 1.2
special_bonds lj 0.2 0.5 0.9
3 = max # of 1-2 neighbors
6 = max # of 1-3 neighbors
14 = max # of 1-4 neighbors
17 = max # of special neighbors
neighbor 0.3 bin
neigh_modify delay 0 every 20 check no
fix 1 all nve
timestep 0.003
thermo 100
run 400
Memory usage per processor = 3.90247 Mbytes
Step Temp E_pair E_mol TotEng Press
0 1.3466461 -5.109478 1.0635883 -2.0299605 1.1359108
100 1.4593306 -4.7587436 0.54533969 -2.028786 2.4513113
200 1.4771558 -4.7655369 0.52660329 -2.0276314 2.4342735
300 1.4210983 -4.6501381 0.49187358 -2.0308804 2.919219
400 1.4183285 -4.7191594 0.56622864 -2.029693 2.8125912
Loop time of 0.405013 on 3 procs (3 MPI x 1 OpenMP) for 400 steps with 500 atoms
Pair time (%) = 0.351959 (86.9005)
Bond time (%) = 0.00291165 (0.718901)
Neigh time (%) = 0.000145753 (0.0359873)
Comm time (%) = 0.0482068 (11.9025)
Outpt time (%) = 0.000240723 (0.0594359)
Other time (%) = 0.00154964 (0.382615)
Nlocal: 166.667 ave 180 max 156 min
Histogram: 1 0 0 1 0 0 0 0 0 1
Nghost: 1261.33 ave 1272 max 1248 min
Histogram: 1 0 0 0 0 0 1 0 0 1
Neighs: 0 ave 0 max 0 min
Histogram: 3 0 0 0 0 0 0 0 0 0
Total # of neighbors = 0
Ave neighs/atom = 0
Ave special neighs/atom = 5.732
Neighbor list builds = 20
Dangerous builds = 0
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