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Sun, Dec 29, 20:00
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rLAMMPS lammps
compute_modify.html
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<HTML>
<CENTER><A
HREF =
"http://lammps.sandia.gov"
>
LAMMPS WWW Site
</A>
-
<A
HREF =
"Manual.html"
>
LAMMPS Documentation
</A>
-
<A
HREF =
"Section_commands.html#comm"
>
LAMMPS Commands
</A>
</CENTER>
<HR>
<H3>
compute_modify command
</H3>
<P><B>
Syntax:
</B>
</P>
<PRE>
compute_modify compute-ID keyword value ...
</PRE>
<UL><LI>
compute-ID = ID of the compute to modify
<LI>
one or more keyword/value pairs may be listed
<LI>
keyword =
<I>
extra
</I>
or
<I>
dynamic
</I>
<PRE>
<I>
extra
</I>
value = N
N = # of extra degrees of freedom to subtract
<I>
dynamic
</I>
value =
<I>
yes
</I>
or
<I>
no
</I>
yes/no = do or do not recompute the number of atoms contributing to the temperature
<I>
thermo
</I>
value =
<I>
yes
</I>
or
<I>
no
</I>
yes/no = do or do not add contributions from fixes to the potential energy
</PRE>
</UL>
<P><B>
Examples:
</B>
</P>
<PRE>
compute_modify myTemp extra 0
compute_modify newtemp dynamic yes extra 600
</PRE>
<P><B>
Description:
</B>
</P>
<P>
Modify one or more parameters of a previously defined compute. Not
all compute styles support all parameters.
</P>
<P>
The
<I>
extra
</I>
keyword refers to how many degrees-of-freedom are
subtracted (typically from 3N) as a normalizing factor in a
temperature computation. Only computes that compute a temperature use
this option. The default is 2 or 3 for
<A
HREF =
"dimension.html"
>
2d or 3d
systems
</A>
which is a correction factor for an ensemble
of velocities with zero total linear momentum. You can use a negative
number for the
<I>
extra
</I>
parameter if you need to add
degrees-of-freedom. See the
<A
HREF =
"compute_temp_asphere.html"
>
compute
temp/asphere
</A>
command for an example.
</P>
<P>
The
<I>
dynamic
</I>
keyword determines whether the number of atoms N in the
compute group is re-computed each time a temperature is computed.
Only compute styles that compute a temperature use this option. By
default, N is assumed to be constant. If you are adding atoms to the
system (see the
<A
HREF =
"fix_pour.html"
>
fix pour
</A>
or
<A
HREF =
"fix_deposit.html"
>
fix
deposit
</A>
commands) or expect atoms to be lost
(e.g. due to evaporation), then this option should be used to insure
the temperature is correctly normalized.
</P>
<P>
The
<I>
thermo
</I>
keyword determines whether the potential energy
contribution calculated by some
<A
HREF =
"fix.html"
>
fixes
</A>
is added to the
potential energy calculated by the compute. Currently, only the
compute of style
<I>
pe
</I>
uses this option. See the doc pages for
<A
HREF =
"fix.html"
>
individual fixes
</A>
for details.
</P>
<P><B>
Restrictions:
</B>
none
</P>
<P><B>
Related commands:
</B>
</P>
<P><A
HREF =
"compute.html"
>
compute
</A>
</P>
<P><B>
Default:
</B>
</P>
<P>
The option defaults are extra = 2 or 3 for 2d or 3d systems and
dynamic = no. Thermo is
<I>
yes
</I>
if the compute of style
<I>
pe
</I>
was
defined with no extra keywords; otherwise it is
<I>
no
</I>
.
</P>
</HTML>
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