Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F80858397
genindex.html
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Mon, Sep 2, 23:08
Size
47 KB
Mime Type
text/html
Expires
Wed, Sep 4, 23:08 (2 d)
Engine
blob
Format
Raw Data
Handle
20460764
Attached To
rLAMMPS lammps
genindex.html
View Options
<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!-->
<html
class=
"no-js"
lang=
"en"
>
<!--<![endif]-->
<head>
<meta
charset=
"utf-8"
>
<meta
name=
"viewport"
content=
"width=device-width, initial-scale=1.0"
>
<title>
Index
—
LAMMPS 15 Dec 2015 documentation
</title>
<link
rel=
"stylesheet"
href=
"_static/css/theme.css"
type=
"text/css"
/>
<link
rel=
"stylesheet"
href=
"_static/sphinxcontrib-images/LightBox2/lightbox2/css/lightbox.css"
type=
"text/css"
/>
<link
rel=
"top"
title=
"LAMMPS 15 Dec 2015 documentation"
href=
"index.html"
/>
<script
src=
"_static/js/modernizr.min.js"
></script>
</head>
<body
class=
"wy-body-for-nav"
role=
"document"
>
<div
class=
"wy-grid-for-nav"
>
<nav
data-toggle=
"wy-nav-shift"
class=
"wy-nav-side"
>
<div
class=
"wy-side-nav-search"
>
<a
href=
"Manual.html"
class=
"icon icon-home"
>
LAMMPS
</a>
<div
role=
"search"
>
<form
id=
"rtd-search-form"
class=
"wy-form"
action=
"search.html"
method=
"get"
>
<input
type=
"text"
name=
"q"
placeholder=
"Search docs"
/>
<input
type=
"hidden"
name=
"check_keywords"
value=
"yes"
/>
<input
type=
"hidden"
name=
"area"
value=
"default"
/>
</form>
</div>
</div>
<div
class=
"wy-menu wy-menu-vertical"
data-spy=
"affix"
role=
"navigation"
aria-label=
"main navigation"
>
<ul>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_intro.html"
>
1. Introduction
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_start.html"
>
2. Getting Started
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_commands.html"
>
3. Commands
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_packages.html"
>
4. Packages
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_accelerate.html"
>
5. Accelerating LAMMPS performance
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_howto.html"
>
6. How-to discussions
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_example.html"
>
7. Example problems
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_perf.html"
>
8. Performance
&
scalability
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_tools.html"
>
9. Additional tools
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_modify.html"
>
10. Modifying
&
extending LAMMPS
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_python.html"
>
11. Python interface to LAMMPS
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_errors.html"
>
12. Errors
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_history.html"
>
13. Future and history
</a></li>
</ul>
</div>
</nav>
<section
data-toggle=
"wy-nav-shift"
class=
"wy-nav-content-wrap"
>
<nav
class=
"wy-nav-top"
role=
"navigation"
aria-label=
"top navigation"
>
<i
data-toggle=
"wy-nav-top"
class=
"fa fa-bars"
></i>
<a
href=
"Manual.html"
>
LAMMPS
</a>
</nav>
<div
class=
"wy-nav-content"
>
<div
class=
"rst-content"
>
<div
role=
"navigation"
aria-label=
"breadcrumbs navigation"
>
<ul
class=
"wy-breadcrumbs"
>
<li><a
href=
"Manual.html"
>
Docs
</a>
»
</li>
<li></li>
<li
class=
"wy-breadcrumbs-aside"
>
<a
href=
"http://lammps.sandia.gov"
>
Website
</a>
<a
href=
"Section_commands.html#comm"
>
Commands
</a>
</li>
</ul>
<hr/>
</div>
<div
role=
"main"
class=
"document"
itemscope=
"itemscope"
itemtype=
"http://schema.org/Article"
>
<div
itemprop=
"articleBody"
>
<h1
id=
"index"
>
Index
</h1>
<div
class=
"genindex-jumpbox"
>
<a
href=
"#A"
><strong>
A
</strong></a>
|
<a
href=
"#B"
><strong>
B
</strong></a>
|
<a
href=
"#C"
><strong>
C
</strong></a>
|
<a
href=
"#D"
><strong>
D
</strong></a>
|
<a
href=
"#E"
><strong>
E
</strong></a>
|
<a
href=
"#F"
><strong>
F
</strong></a>
|
<a
href=
"#G"
><strong>
G
</strong></a>
|
<a
href=
"#I"
><strong>
I
</strong></a>
|
<a
href=
"#J"
><strong>
J
</strong></a>
|
<a
href=
"#K"
><strong>
K
</strong></a>
|
<a
href=
"#L"
><strong>
L
</strong></a>
|
<a
href=
"#M"
><strong>
M
</strong></a>
|
<a
href=
"#N"
><strong>
N
</strong></a>
|
<a
href=
"#P"
><strong>
P
</strong></a>
|
<a
href=
"#Q"
><strong>
Q
</strong></a>
|
<a
href=
"#R"
><strong>
R
</strong></a>
|
<a
href=
"#S"
><strong>
S
</strong></a>
|
<a
href=
"#T"
><strong>
T
</strong></a>
|
<a
href=
"#U"
><strong>
U
</strong></a>
|
<a
href=
"#V"
><strong>
V
</strong></a>
|
<a
href=
"#W"
><strong>
W
</strong></a>
</div>
<h2
id=
"A"
>
A
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"angle_coeff.html#index-0"
>
angle_coeff
</a>
</dt>
<dt><a
href=
"angle_style.html#index-0"
>
angle_style
</a>
</dt>
<dt><a
href=
"angle_charmm.html#index-0"
>
angle_style charmm
</a>
</dt>
<dt><a
href=
"angle_class2.html#index-0"
>
angle_style class2
</a>
</dt>
<dt><a
href=
"angle_cosine.html#index-0"
>
angle_style cosine
</a>
</dt>
<dt><a
href=
"angle_cosine_delta.html#index-0"
>
angle_style cosine/delta
</a>
</dt>
<dt><a
href=
"angle_cosine_periodic.html#index-0"
>
angle_style cosine/periodic
</a>
</dt>
<dt><a
href=
"angle_cosine_shift.html#index-0"
>
angle_style cosine/shift
</a>
</dt>
<dt><a
href=
"angle_cosine_shift_exp.html#index-0"
>
angle_style cosine/shift/exp
</a>
</dt>
<dt><a
href=
"angle_cosine_squared.html#index-0"
>
angle_style cosine/squared
</a>
</dt>
<dt><a
href=
"angle_dipole.html#index-0"
>
angle_style dipole
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"angle_fourier.html#index-0"
>
angle_style fourier
</a>
</dt>
<dt><a
href=
"angle_fourier_simple.html#index-0"
>
angle_style fourier/simple
</a>
</dt>
<dt><a
href=
"angle_harmonic.html#index-0"
>
angle_style harmonic
</a>
</dt>
<dt><a
href=
"angle_hybrid.html#index-0"
>
angle_style hybrid
</a>
</dt>
<dt><a
href=
"angle_none.html#index-0"
>
angle_style none
</a>
</dt>
<dt><a
href=
"angle_quartic.html#index-0"
>
angle_style quartic
</a>
</dt>
<dt><a
href=
"angle_sdk.html#index-0"
>
angle_style sdk
</a>
</dt>
<dt><a
href=
"angle_table.html#index-0"
>
angle_style table
</a>
</dt>
<dt><a
href=
"atom_modify.html#index-0"
>
atom_modify
</a>
</dt>
<dt><a
href=
"atom_style.html#index-0"
>
atom_style
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"B"
>
B
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"balance.html#index-0"
>
balance
</a>
</dt>
<dt><a
href=
"bond_coeff.html#index-0"
>
bond_coeff
</a>
</dt>
<dt><a
href=
"bond_style.html#index-0"
>
bond_style
</a>
</dt>
<dt><a
href=
"bond_class2.html#index-0"
>
bond_style class2
</a>
</dt>
<dt><a
href=
"bond_fene.html#index-0"
>
bond_style fene
</a>
</dt>
<dt><a
href=
"bond_fene_expand.html#index-0"
>
bond_style fene/expand
</a>
</dt>
<dt><a
href=
"bond_harmonic.html#index-0"
>
bond_style harmonic
</a>
</dt>
<dt><a
href=
"bond_harmonic_shift.html#index-0"
>
bond_style harmonic/shift
</a>
</dt>
<dt><a
href=
"bond_harmonic_shift_cut.html#index-0"
>
bond_style harmonic/shift/cut
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"bond_hybrid.html#index-0"
>
bond_style hybrid
</a>
</dt>
<dt><a
href=
"bond_morse.html#index-0"
>
bond_style morse
</a>
</dt>
<dt><a
href=
"bond_none.html#index-0"
>
bond_style none
</a>
</dt>
<dt><a
href=
"bond_nonlinear.html#index-0"
>
bond_style nonlinear
</a>
</dt>
<dt><a
href=
"bond_quartic.html#index-0"
>
bond_style quartic
</a>
</dt>
<dt><a
href=
"bond_table.html#index-0"
>
bond_style table
</a>
</dt>
<dt><a
href=
"boundary.html#index-0"
>
boundary
</a>
</dt>
<dt><a
href=
"box.html#index-0"
>
box
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"C"
>
C
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"change_box.html#index-0"
>
change_box
</a>
</dt>
<dt><a
href=
"clear.html#index-0"
>
clear
</a>
</dt>
<dt><a
href=
"comm_modify.html#index-0"
>
comm_modify
</a>
</dt>
<dt><a
href=
"comm_style.html#index-0"
>
comm_style
</a>
</dt>
<dt><a
href=
"compute.html#index-0"
>
compute
</a>
</dt>
<dt><a
href=
"compute_ackland_atom.html#index-0"
>
compute ackland/atom
</a>
</dt>
<dt><a
href=
"compute_angle_local.html#index-0"
>
compute angle/local
</a>
</dt>
<dt><a
href=
"compute_angmom_chunk.html#index-0"
>
compute angmom/chunk
</a>
</dt>
<dt><a
href=
"compute_basal_atom.html#index-0"
>
compute basal/atom
</a>
</dt>
<dt><a
href=
"compute_body_local.html#index-0"
>
compute body/local
</a>
</dt>
<dt><a
href=
"compute_bond_local.html#index-0"
>
compute bond/local
</a>
</dt>
<dt><a
href=
"compute_centro_atom.html#index-0"
>
compute centro/atom
</a>
</dt>
<dt><a
href=
"compute_chunk_atom.html#index-0"
>
compute chunk/atom
</a>
</dt>
<dt><a
href=
"compute_cluster_atom.html#index-0"
>
compute cluster/atom
</a>
</dt>
<dt><a
href=
"compute_cna_atom.html#index-0"
>
compute cna/atom
</a>
</dt>
<dt><a
href=
"compute_com.html#index-0"
>
compute com
</a>
</dt>
<dt><a
href=
"compute_com_chunk.html#index-0"
>
compute com/chunk
</a>
</dt>
<dt><a
href=
"compute_contact_atom.html#index-0"
>
compute contact/atom
</a>
</dt>
<dt><a
href=
"compute_coord_atom.html#index-0"
>
compute coord/atom
</a>
</dt>
<dt><a
href=
"compute_damage_atom.html#index-0"
>
compute damage/atom
</a>
</dt>
<dt><a
href=
"compute_dihedral_local.html#index-0"
>
compute dihedral/local
</a>
</dt>
<dt><a
href=
"compute_dilatation_atom.html#index-0"
>
compute dilatation/atom
</a>
</dt>
<dt><a
href=
"compute_displace_atom.html#index-0"
>
compute displace/atom
</a>
</dt>
<dt><a
href=
"compute_erotate_asphere.html#index-0"
>
compute erotate/asphere
</a>
</dt>
<dt><a
href=
"compute_erotate_rigid.html#index-0"
>
compute erotate/rigid
</a>
</dt>
<dt><a
href=
"compute_erotate_sphere.html#index-0"
>
compute erotate/sphere
</a>
</dt>
<dt><a
href=
"compute_erotate_sphere_atom.html#index-0"
>
compute erotate/sphere/atom
</a>
</dt>
<dt><a
href=
"compute_event_displace.html#index-0"
>
compute event/displace
</a>
</dt>
<dt><a
href=
"compute_fep.html#index-0"
>
compute fep
</a>
</dt>
<dt><a
href=
"compute_tally.html#index-0"
>
compute force/tally
</a>
</dt>
<dt><a
href=
"compute_group_group.html#index-0"
>
compute group/group
</a>
</dt>
<dt><a
href=
"compute_gyration.html#index-0"
>
compute gyration
</a>
</dt>
<dt><a
href=
"compute_gyration_chunk.html#index-0"
>
compute gyration/chunk
</a>
</dt>
<dt><a
href=
"compute_heat_flux.html#index-0"
>
compute heat/flux
</a>
</dt>
<dt><a
href=
"compute_hexorder_atom.html#index-0"
>
compute hexorder/atom
</a>
</dt>
<dt><a
href=
"compute_improper_local.html#index-0"
>
compute improper/local
</a>
</dt>
<dt><a
href=
"compute_inertia_chunk.html#index-0"
>
compute inertia/chunk
</a>
</dt>
<dt><a
href=
"compute_ke.html#index-0"
>
compute ke
</a>
</dt>
<dt><a
href=
"compute_ke_atom.html#index-0"
>
compute ke/atom
</a>
</dt>
<dt><a
href=
"compute_ke_atom_eff.html#index-0"
>
compute ke/atom/eff
</a>
</dt>
<dt><a
href=
"compute_ke_eff.html#index-0"
>
compute ke/eff
</a>
</dt>
<dt><a
href=
"compute_ke_rigid.html#index-0"
>
compute ke/rigid
</a>
</dt>
<dt><a
href=
"compute_meso_e_atom.html#index-0"
>
compute meso_e/atom
</a>
</dt>
<dt><a
href=
"compute_meso_rho_atom.html#index-0"
>
compute meso_rho/atom
</a>
</dt>
<dt><a
href=
"compute_meso_t_atom.html#index-0"
>
compute meso_t/atom
</a>
</dt>
<dt><a
href=
"compute_msd.html#index-0"
>
compute msd
</a>
</dt>
<dt><a
href=
"compute_msd_chunk.html#index-0"
>
compute msd/chunk
</a>
</dt>
<dt><a
href=
"compute_msd_nongauss.html#index-0"
>
compute msd/nongauss
</a>
</dt>
<dt><a
href=
"compute_omega_chunk.html#index-0"
>
compute omega/chunk
</a>
</dt>
<dt><a
href=
"compute_orientorder_atom.html#index-0"
>
compute orientorder/atom
</a>
</dt>
<dt><a
href=
"compute_pair.html#index-0"
>
compute pair
</a>
</dt>
<dt><a
href=
"compute_pair_local.html#index-0"
>
compute pair/local
</a>
</dt>
<dt><a
href=
"compute_pe.html#index-0"
>
compute pe
</a>
</dt>
<dt><a
href=
"compute_pe_atom.html#index-0"
>
compute pe/atom
</a>
</dt>
<dt><a
href=
"compute_plasticity_atom.html#index-0"
>
compute plasticity/atom
</a>
</dt>
<dt><a
href=
"compute_pressure.html#index-0"
>
compute pressure
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"compute_property_atom.html#index-0"
>
compute property/atom
</a>
</dt>
<dt><a
href=
"compute_property_chunk.html#index-0"
>
compute property/chunk
</a>
</dt>
<dt><a
href=
"compute_property_local.html#index-0"
>
compute property/local
</a>
</dt>
<dt><a
href=
"compute_rdf.html#index-0"
>
compute rdf
</a>
</dt>
<dt><a
href=
"compute_reduce.html#index-0"
>
compute reduce
</a>
</dt>
<dt><a
href=
"compute_saed.html#index-0"
>
compute saed
</a>
</dt>
<dt><a
href=
"compute_slice.html#index-0"
>
compute slice
</a>
</dt>
<dt><a
href=
"compute_smd_contact_radius.html#index-0"
>
compute smd/contact_radius
</a>
</dt>
<dt><a
href=
"compute_smd_damage.html#index-0"
>
compute smd/damage
</a>
</dt>
<dt><a
href=
"compute_smd_hourglass_error.html#index-0"
>
compute smd/hourglass_error
</a>
</dt>
<dt><a
href=
"compute_smd_internal_energy.html#index-0"
>
compute smd/internal_energy
</a>
</dt>
<dt><a
href=
"compute_smd_plastic_strain.html#index-0"
>
compute smd/plastic_strain
</a>
</dt>
<dt><a
href=
"compute_smd_plastic_strain_rate.html#index-0"
>
compute smd/plastic_strain_rate
</a>
</dt>
<dt><a
href=
"compute_smd_rho.html#index-0"
>
compute smd/rho
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_defgrad.html#index-0"
>
compute smd/tlsph_defgrad
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_dt.html#index-0"
>
compute smd/tlsph_dt
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_num_neighs.html#index-0"
>
compute smd/tlsph_num_neighs
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_shape.html#index-0"
>
compute smd/tlsph_shape
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_strain.html#index-0"
>
compute smd/tlsph_strain
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_strain_rate.html#index-0"
>
compute smd/tlsph_strain_rate
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_stress.html#index-0"
>
compute smd/tlsph_stress
</a>
</dt>
<dt><a
href=
"compute_smd_ulsph_num_neighs.html#index-0"
>
compute smd/ulsph_num_neighs
</a>
</dt>
<dt><a
href=
"compute_smd_ulsph_strain.html#index-0"
>
compute smd/ulsph_strain
</a>
</dt>
<dt><a
href=
"compute_smd_ulsph_strain_rate.html#index-0"
>
compute smd/ulsph_strain_rate
</a>
</dt>
<dt><a
href=
"compute_smd_ulsph_stress.html#index-0"
>
compute smd/ulsph_stress
</a>
</dt>
<dt><a
href=
"compute_smd_vol.html#index-0"
>
compute smd/vol
</a>
</dt>
<dt><a
href=
"compute_sna_atom.html#index-0"
>
compute sna/atom
</a>
</dt>
<dt><a
href=
"compute_stress_atom.html#index-0"
>
compute stress/atom
</a>
</dt>
<dt><a
href=
"compute_temp.html#index-0"
>
compute temp
</a>
</dt>
<dt><a
href=
"compute_temp_asphere.html#index-0"
>
compute temp/asphere
</a>
</dt>
<dt><a
href=
"compute_temp_body.html#index-0"
>
compute temp/body
</a>
</dt>
<dt><a
href=
"compute_temp_chunk.html#index-0"
>
compute temp/chunk
</a>
</dt>
<dt><a
href=
"compute_temp_com.html#index-0"
>
compute temp/com
</a>
</dt>
<dt><a
href=
"compute_temp_cs.html#index-0"
>
compute temp/cs
</a>
</dt>
<dt><a
href=
"compute_temp_deform.html#index-0"
>
compute temp/deform
</a>
</dt>
<dt><a
href=
"compute_temp_deform_eff.html#index-0"
>
compute temp/deform/eff
</a>
</dt>
<dt><a
href=
"compute_temp_drude.html#index-0"
>
compute temp/drude
</a>
</dt>
<dt><a
href=
"compute_temp_eff.html#index-0"
>
compute temp/eff
</a>
</dt>
<dt><a
href=
"compute_temp_partial.html#index-0"
>
compute temp/partial
</a>
</dt>
<dt><a
href=
"compute_temp_profile.html#index-0"
>
compute temp/profile
</a>
</dt>
<dt><a
href=
"compute_temp_ramp.html#index-0"
>
compute temp/ramp
</a>
</dt>
<dt><a
href=
"compute_temp_region.html#index-0"
>
compute temp/region
</a>
</dt>
<dt><a
href=
"compute_temp_region_eff.html#index-0"
>
compute temp/region/eff
</a>
</dt>
<dt><a
href=
"compute_temp_rotate.html#index-0"
>
compute temp/rotate
</a>
</dt>
<dt><a
href=
"compute_temp_sphere.html#index-0"
>
compute temp/sphere
</a>
</dt>
<dt><a
href=
"compute_ti.html#index-0"
>
compute ti
</a>
</dt>
<dt><a
href=
"compute_torque_chunk.html#index-0"
>
compute torque/chunk
</a>
</dt>
<dt><a
href=
"compute_vacf.html#index-0"
>
compute vacf
</a>
</dt>
<dt><a
href=
"compute_vcm_chunk.html#index-0"
>
compute vcm/chunk
</a>
</dt>
<dt><a
href=
"compute_voronoi_atom.html#index-0"
>
compute voronoi/atom
</a>
</dt>
<dt><a
href=
"compute_xrd.html#index-0"
>
compute xrd
</a>
</dt>
<dt><a
href=
"compute_modify.html#index-0"
>
compute_modify
</a>
</dt>
<dt><a
href=
"create_atoms.html#index-0"
>
create_atoms
</a>
</dt>
<dt><a
href=
"create_bonds.html#index-0"
>
create_bonds
</a>
</dt>
<dt><a
href=
"create_box.html#index-0"
>
create_box
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"D"
>
D
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"delete_atoms.html#index-0"
>
delete_atoms
</a>
</dt>
<dt><a
href=
"delete_bonds.html#index-0"
>
delete_bonds
</a>
</dt>
<dt><a
href=
"dielectric.html#index-0"
>
dielectric
</a>
</dt>
<dt><a
href=
"dihedral_coeff.html#index-0"
>
dihedral_coeff
</a>
</dt>
<dt><a
href=
"dihedral_style.html#index-0"
>
dihedral_style
</a>
</dt>
<dt><a
href=
"dihedral_charmm.html#index-0"
>
dihedral_style charmm
</a>
</dt>
<dt><a
href=
"dihedral_class2.html#index-0"
>
dihedral_style class2
</a>
</dt>
<dt><a
href=
"dihedral_cosine_shift_exp.html#index-0"
>
dihedral_style cosine/shift/exp
</a>
</dt>
<dt><a
href=
"dihedral_fourier.html#index-0"
>
dihedral_style fourier
</a>
</dt>
<dt><a
href=
"dihedral_harmonic.html#index-0"
>
dihedral_style harmonic
</a>
</dt>
<dt><a
href=
"dihedral_helix.html#index-0"
>
dihedral_style helix
</a>
</dt>
<dt><a
href=
"dihedral_hybrid.html#index-0"
>
dihedral_style hybrid
</a>
</dt>
<dt><a
href=
"dihedral_multi_harmonic.html#index-0"
>
dihedral_style multi/harmonic
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"dihedral_nharmonic.html#index-0"
>
dihedral_style nharmonic
</a>
</dt>
<dt><a
href=
"dihedral_none.html#index-0"
>
dihedral_style none
</a>
</dt>
<dt><a
href=
"dihedral_opls.html#index-0"
>
dihedral_style opls
</a>
</dt>
<dt><a
href=
"dihedral_quadratic.html#index-0"
>
dihedral_style quadratic
</a>
</dt>
<dt><a
href=
"dihedral_table.html#index-0"
>
dihedral_style table
</a>
</dt>
<dt><a
href=
"dimension.html#index-0"
>
dimension
</a>
</dt>
<dt><a
href=
"displace_atoms.html#index-0"
>
displace_atoms
</a>
</dt>
<dt><a
href=
"dump.html#index-0"
>
dump
</a>
</dt>
<dt><a
href=
"dump_h5md.html#index-0"
>
dump h5md
</a>
</dt>
<dt><a
href=
"dump_image.html#index-0"
>
dump image
</a>
</dt>
<dt><a
href=
"dump_molfile.html#index-0"
>
dump molfile
</a>
</dt>
<dt><a
href=
"dump_modify.html#index-0"
>
dump_modify
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"E"
>
E
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"echo.html#index-0"
>
echo
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"F"
>
F
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"fix.html#index-0"
>
fix
</a>
</dt>
<dt><a
href=
"fix_adapt.html#index-0"
>
fix adapt
</a>
</dt>
<dt><a
href=
"fix_adapt_fep.html#index-0"
>
fix adapt/fep
</a>
</dt>
<dt><a
href=
"fix_addforce.html#index-0"
>
fix addforce
</a>
</dt>
<dt><a
href=
"fix_addtorque.html#index-0"
>
fix addtorque
</a>
</dt>
<dt><a
href=
"fix_append_atoms.html#index-0"
>
fix append/atoms
</a>
</dt>
<dt><a
href=
"fix_atc.html#index-0"
>
fix atc
</a>
</dt>
<dt><a
href=
"fix_atom_swap.html#index-0"
>
fix atom/swap
</a>
</dt>
<dt><a
href=
"fix_ave_atom.html#index-0"
>
fix ave/atom
</a>
</dt>
<dt><a
href=
"fix_ave_chunk.html#index-0"
>
fix ave/chunk
</a>
</dt>
<dt><a
href=
"fix_ave_correlate.html#index-0"
>
fix ave/correlate
</a>
</dt>
<dt><a
href=
"fix_ave_correlate_long.html#index-0"
>
fix ave/correlate/long
</a>
</dt>
<dt><a
href=
"fix_ave_histo.html#index-0"
>
fix ave/histo
</a>
</dt>
<dt><a
href=
"fix_ave_spatial.html#index-0"
>
fix ave/spatial
</a>
</dt>
<dt><a
href=
"fix_ave_spatial_sphere.html#index-0"
>
fix ave/spatial/sphere
</a>
</dt>
<dt><a
href=
"fix_ave_time.html#index-0"
>
fix ave/time
</a>
</dt>
<dt><a
href=
"fix_aveforce.html#index-0"
>
fix aveforce
</a>
</dt>
<dt><a
href=
"fix_balance.html#index-0"
>
fix balance
</a>
</dt>
<dt><a
href=
"fix_bond_break.html#index-0"
>
fix bond/break
</a>
</dt>
<dt><a
href=
"fix_bond_create.html#index-0"
>
fix bond/create
</a>
</dt>
<dt><a
href=
"fix_bond_swap.html#index-0"
>
fix bond/swap
</a>
</dt>
<dt><a
href=
"fix_box_relax.html#index-0"
>
fix box/relax
</a>
</dt>
<dt><a
href=
"fix_colvars.html#index-0"
>
fix colvars
</a>
</dt>
<dt><a
href=
"fix_deform.html#index-0"
>
fix deform
</a>
</dt>
<dt><a
href=
"fix_deposit.html#index-0"
>
fix deposit
</a>
</dt>
<dt><a
href=
"fix_drag.html#index-0"
>
fix drag
</a>
</dt>
<dt><a
href=
"fix_drude.html#index-0"
>
fix drude
</a>
</dt>
<dt><a
href=
"fix_drude_transform.html#index-0"
>
fix drude/transform/direct
</a>
</dt>
<dt><a
href=
"fix_dt_reset.html#index-0"
>
fix dt/reset
</a>
</dt>
<dt><a
href=
"fix_efield.html#index-0"
>
fix efield
</a>
</dt>
<dt><a
href=
"fix_enforce2d.html#index-0"
>
fix enforce2d
</a>
</dt>
<dt><a
href=
"fix_evaporate.html#index-0"
>
fix evaporate
</a>
</dt>
<dt><a
href=
"fix_external.html#index-0"
>
fix external
</a>
</dt>
<dt><a
href=
"fix_freeze.html#index-0"
>
fix freeze
</a>
</dt>
<dt><a
href=
"fix_gcmc.html#index-0"
>
fix gcmc
</a>
</dt>
<dt><a
href=
"fix_gld.html#index-0"
>
fix gld
</a>
</dt>
<dt><a
href=
"fix_gle.html#index-0"
>
fix gle
</a>
</dt>
<dt><a
href=
"fix_gravity.html#index-0"
>
fix gravity
</a>
</dt>
<dt><a
href=
"fix_heat.html#index-0"
>
fix heat
</a>
</dt>
<dt><a
href=
"fix_imd.html#index-0"
>
fix imd
</a>
</dt>
<dt><a
href=
"fix_indent.html#index-0"
>
fix indent
</a>
</dt>
<dt><a
href=
"fix_ipi.html#index-0"
>
fix ipi
</a>
</dt>
<dt><a
href=
"fix_langevin.html#index-0"
>
fix langevin
</a>
</dt>
<dt><a
href=
"fix_langevin_drude.html#index-0"
>
fix langevin/drude
</a>
</dt>
<dt><a
href=
"fix_langevin_eff.html#index-0"
>
fix langevin/eff
</a>
</dt>
<dt><a
href=
"fix_lb_fluid.html#index-0"
>
fix lb/fluid
</a>
</dt>
<dt><a
href=
"fix_lb_momentum.html#index-0"
>
fix lb/momentum
</a>
</dt>
<dt><a
href=
"fix_lb_pc.html#index-0"
>
fix lb/pc
</a>
</dt>
<dt><a
href=
"fix_lb_rigid_pc_sphere.html#index-0"
>
fix lb/rigid/pc/sphere
</a>
</dt>
<dt><a
href=
"fix_lb_viscous.html#index-0"
>
fix lb/viscous
</a>
</dt>
<dt><a
href=
"fix_lineforce.html#index-0"
>
fix lineforce
</a>
</dt>
<dt><a
href=
"fix_meso.html#index-0"
>
fix meso
</a>
</dt>
<dt><a
href=
"fix_meso_stationary.html#index-0"
>
fix meso/stationary
</a>
</dt>
<dt><a
href=
"fix_momentum.html#index-0"
>
fix momentum
</a>
</dt>
<dt><a
href=
"fix_move.html#index-0"
>
fix move
</a>
</dt>
<dt><a
href=
"fix_msst.html#index-0"
>
fix msst
</a>
</dt>
<dt><a
href=
"fix_neb.html#index-0"
>
fix neb
</a>
</dt>
<dt><a
href=
"fix_nph_asphere.html#index-0"
>
fix nph/asphere
</a>
</dt>
<dt><a
href=
"fix_nph_body.html#index-0"
>
fix nph/body
</a>
</dt>
<dt><a
href=
"fix_nph_sphere.html#index-0"
>
fix nph/sphere
</a>
</dt>
<dt><a
href=
"fix_nphug.html#index-0"
>
fix nphug
</a>
</dt>
<dt><a
href=
"fix_npt_asphere.html#index-0"
>
fix npt/asphere
</a>
</dt>
<dt><a
href=
"fix_npt_body.html#index-0"
>
fix npt/body
</a>
</dt>
<dt><a
href=
"fix_npt_sphere.html#index-0"
>
fix npt/sphere
</a>
</dt>
<dt><a
href=
"fix_nve.html#index-0"
>
fix nve
</a>
</dt>
<dt><a
href=
"fix_nve_asphere.html#index-0"
>
fix nve/asphere
</a>
</dt>
<dt><a
href=
"fix_nve_asphere_noforce.html#index-0"
>
fix nve/asphere/noforce
</a>
</dt>
<dt><a
href=
"fix_nve_body.html#index-0"
>
fix nve/body
</a>
</dt>
<dt><a
href=
"fix_nve_eff.html#index-0"
>
fix nve/eff
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"fix_nve_limit.html#index-0"
>
fix nve/limit
</a>
</dt>
<dt><a
href=
"fix_nve_line.html#index-0"
>
fix nve/line
</a>
</dt>
<dt><a
href=
"fix_nve_noforce.html#index-0"
>
fix nve/noforce
</a>
</dt>
<dt><a
href=
"fix_nve_sphere.html#index-0"
>
fix nve/sphere
</a>
</dt>
<dt><a
href=
"fix_nve_tri.html#index-0"
>
fix nve/tri
</a>
</dt>
<dt><a
href=
"fix_nh.html#index-0"
>
fix nvt
</a>
</dt>
<dt><a
href=
"fix_nvt_asphere.html#index-0"
>
fix nvt/asphere
</a>
</dt>
<dt><a
href=
"fix_nvt_body.html#index-0"
>
fix nvt/body
</a>
</dt>
<dt><a
href=
"fix_nh_eff.html#index-0"
>
fix nvt/eff
</a>
</dt>
<dt><a
href=
"fix_nvt_sllod.html#index-0"
>
fix nvt/sllod
</a>
</dt>
<dt><a
href=
"fix_nvt_sllod_eff.html#index-0"
>
fix nvt/sllod/eff
</a>
</dt>
<dt><a
href=
"fix_nvt_sphere.html#index-0"
>
fix nvt/sphere
</a>
</dt>
<dt><a
href=
"fix_oneway.html#index-0"
>
fix oneway
</a>
</dt>
<dt><a
href=
"fix_orient_fcc.html#index-0"
>
fix orient/fcc
</a>
</dt>
<dt><a
href=
"fix_phonon.html#index-0"
>
fix phonon
</a>
</dt>
<dt><a
href=
"fix_pimd.html#index-0"
>
fix pimd
</a>
</dt>
<dt><a
href=
"fix_planeforce.html#index-0"
>
fix planeforce
</a>
</dt>
<dt><a
href=
"fix_pour.html#index-0"
>
fix pour
</a>
</dt>
<dt><a
href=
"fix_press_berendsen.html#index-0"
>
fix press/berendsen
</a>
</dt>
<dt><a
href=
"fix_print.html#index-0"
>
fix print
</a>
</dt>
<dt><a
href=
"fix_property_atom.html#index-0"
>
fix property/atom
</a>
</dt>
<dt><a
href=
"fix_qbmsst.html#index-0"
>
fix qbmsst
</a>
</dt>
<dt><a
href=
"fix_qeq_comb.html#index-0"
>
fix qeq/comb
</a>
</dt>
<dt><a
href=
"fix_qeq.html#index-0"
>
fix qeq/point
</a>
</dt>
<dt><a
href=
"fix_qeq_reax.html#index-0"
>
fix qeq/reax
</a>
</dt>
<dt><a
href=
"fix_qmmm.html#index-0"
>
fix qmmm
</a>
</dt>
<dt><a
href=
"fix_qtb.html#index-0"
>
fix qtb
</a>
</dt>
<dt><a
href=
"fix_reax_bonds.html#index-0"
>
fix reax/bonds
</a>
</dt>
<dt><a
href=
"fix_reaxc_species.html#index-0"
>
fix reax/c/species
</a>
</dt>
<dt><a
href=
"fix_recenter.html#index-0"
>
fix recenter
</a>
</dt>
<dt><a
href=
"fix_restrain.html#index-0"
>
fix restrain
</a>
</dt>
<dt><a
href=
"fix_rigid.html#index-0"
>
fix rigid
</a>
</dt>
<dt><a
href=
"fix_saed_vtk.html#index-0"
>
fix saed/vtk
</a>
</dt>
<dt><a
href=
"fix_setforce.html#index-0"
>
fix setforce
</a>
</dt>
<dt><a
href=
"fix_shake.html#index-0"
>
fix shake
</a>
</dt>
<dt><a
href=
"fix_smd.html#index-0"
>
fix smd
</a>
</dt>
<dt><a
href=
"fix_smd_adjust_dt.html#index-0"
>
fix smd/adjust_dt
</a>
</dt>
<dt><a
href=
"fix_smd_integrate_tlsph.html#index-0"
>
fix smd/integrate_tlsph
</a>
</dt>
<dt><a
href=
"fix_smd_integrate_ulsph.html#index-0"
>
fix smd/integrate_ulsph
</a>
</dt>
<dt><a
href=
"fix_smd_move_triangulated_surface.html#index-0"
>
fix smd/move_tri_surf
</a>
</dt>
<dt><a
href=
"fix_smd_setvel.html#index-0"
>
fix smd/setvel
</a>
</dt>
<dt><a
href=
"fix_smd_wall_surface.html#index-0"
>
fix smd/wall_surface
</a>
</dt>
<dt><a
href=
"fix_spring.html#index-0"
>
fix spring
</a>
</dt>
<dt><a
href=
"fix_spring_rg.html#index-0"
>
fix spring/rg
</a>
</dt>
<dt><a
href=
"fix_spring_self.html#index-0"
>
fix spring/self
</a>
</dt>
<dt><a
href=
"fix_srd.html#index-0"
>
fix srd
</a>
</dt>
<dt><a
href=
"fix_store_force.html#index-0"
>
fix store/force
</a>
</dt>
<dt><a
href=
"fix_store_state.html#index-0"
>
fix store/state
</a>
</dt>
<dt><a
href=
"fix_temp_berendsen.html#index-0"
>
fix temp/berendsen
</a>
</dt>
<dt><a
href=
"fix_temp_csvr.html#index-0"
>
fix temp/csvr
</a>
</dt>
<dt><a
href=
"fix_temp_rescale.html#index-0"
>
fix temp/rescale
</a>
</dt>
<dt><a
href=
"fix_temp_rescale_eff.html#index-0"
>
fix temp/rescale/eff
</a>
</dt>
<dt><a
href=
"fix_tfmc.html#index-0"
>
fix tfmc
</a>
</dt>
<dt><a
href=
"fix_thermal_conductivity.html#index-0"
>
fix thermal/conductivity
</a>
</dt>
<dt><a
href=
"fix_ti_rs.html#index-0"
>
fix ti/rs
</a>
</dt>
<dt><a
href=
"fix_ti_spring.html#index-0"
>
fix ti/spring
</a>
</dt>
<dt><a
href=
"fix_tmd.html#index-0"
>
fix tmd
</a>
</dt>
<dt><a
href=
"fix_ttm.html#index-0"
>
fix ttm
</a>
</dt>
<dt><a
href=
"fix_tune_kspace.html#index-0"
>
fix tune/kspace
</a>
</dt>
<dt><a
href=
"fix_vector.html#index-0"
>
fix vector
</a>
</dt>
<dt><a
href=
"fix_viscosity.html#index-0"
>
fix viscosity
</a>
</dt>
<dt><a
href=
"fix_viscous.html#index-0"
>
fix viscous
</a>
</dt>
<dt><a
href=
"fix_wall_gran.html#index-0"
>
fix wall/gran
</a>
</dt>
<dt><a
href=
"fix_wall.html#index-0"
>
fix wall/lj93
</a>
</dt>
<dt><a
href=
"fix_wall_piston.html#index-0"
>
fix wall/piston
</a>
</dt>
<dt><a
href=
"fix_wall_reflect.html#index-0"
>
fix wall/reflect
</a>
</dt>
<dt><a
href=
"fix_wall_region.html#index-0"
>
fix wall/region
</a>
</dt>
<dt><a
href=
"fix_wall_srd.html#index-0"
>
fix wall/srd
</a>
</dt>
<dt><a
href=
"fix_modify.html#index-0"
>
fix_modify
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"G"
>
G
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"group.html#index-0"
>
group
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"group2ndx.html#index-0"
>
group2ndx
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"I"
>
I
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"if.html#index-0"
>
if
</a>
</dt>
<dt><a
href=
"improper_coeff.html#index-0"
>
improper_coeff
</a>
</dt>
<dt><a
href=
"improper_style.html#index-0"
>
improper_style
</a>
</dt>
<dt><a
href=
"improper_class2.html#index-0"
>
improper_style class2
</a>
</dt>
<dt><a
href=
"improper_cossq.html#index-0"
>
improper_style cossq
</a>
</dt>
<dt><a
href=
"improper_cvff.html#index-0"
>
improper_style cvff
</a>
</dt>
<dt><a
href=
"improper_distance.html#index-0"
>
improper_style distance
</a>
</dt>
<dt><a
href=
"improper_fourier.html#index-0"
>
improper_style fourier
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"improper_harmonic.html#index-0"
>
improper_style harmonic
</a>
</dt>
<dt><a
href=
"improper_hybrid.html#index-0"
>
improper_style hybrid
</a>
</dt>
<dt><a
href=
"improper_none.html#index-0"
>
improper_style none
</a>
</dt>
<dt><a
href=
"improper_ring.html#index-0"
>
improper_style ring
</a>
</dt>
<dt><a
href=
"improper_umbrella.html#index-0"
>
improper_style umbrella
</a>
</dt>
<dt><a
href=
"include.html#index-0"
>
include
</a>
</dt>
<dt><a
href=
"info.html#index-0"
>
info
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"J"
>
J
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"jump.html#index-0"
>
jump
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"K"
>
K
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"kspace_modify.html#index-0"
>
kspace_modify
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"kspace_style.html#index-0"
>
kspace_style
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"L"
>
L
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"label.html#index-0"
>
label
</a>
</dt>
<dt><a
href=
"lattice.html#index-0"
>
lattice
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"log.html#index-0"
>
log
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"M"
>
M
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"mass.html#index-0"
>
mass
</a>
</dt>
<dt><a
href=
"min_modify.html#index-0"
>
min_modify
</a>
</dt>
<dt><a
href=
"min_style.html#index-0"
>
min_style
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"minimize.html#index-0"
>
minimize
</a>
</dt>
<dt><a
href=
"molecule.html#index-0"
>
molecule
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"N"
>
N
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"neb.html#index-0"
>
neb
</a>
</dt>
<dt><a
href=
"neigh_modify.html#index-0"
>
neigh_modify
</a>
</dt>
<dt><a
href=
"neighbor.html#index-0"
>
neighbor
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"newton.html#index-0"
>
newton
</a>
</dt>
<dt><a
href=
"next.html#index-0"
>
next
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"P"
>
P
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"package.html#index-0"
>
package
</a>
</dt>
<dt><a
href=
"pair_coeff.html#index-0"
>
pair_coeff
</a>
</dt>
<dt><a
href=
"pair_modify.html#index-0"
>
pair_modify
</a>
</dt>
<dt><a
href=
"pair_style.html#index-0"
>
pair_style
</a>
</dt>
<dt><a
href=
"pair_adp.html#index-0"
>
pair_style adp
</a>
</dt>
<dt><a
href=
"pair_airebo.html#index-0"
>
pair_style airebo
</a>
</dt>
<dt><a
href=
"pair_awpmd.html#index-0"
>
pair_style awpmd/cut
</a>
</dt>
<dt><a
href=
"pair_beck.html#index-0"
>
pair_style beck
</a>
</dt>
<dt><a
href=
"pair_body.html#index-0"
>
pair_style body
</a>
</dt>
<dt><a
href=
"pair_body_rounded_polygon.html#index-0"
>
pair_style body/rounded/polygon
</a>
</dt>
<dt><a
href=
"pair_bop.html#index-0"
>
pair_style bop
</a>
</dt>
<dt><a
href=
"pair_born.html#index-0"
>
pair_style born
</a>
</dt>
<dt><a
href=
"pair_cs.html#index-0"
>
pair_style born/coul/long/cs
</a>
</dt>
<dt><a
href=
"pair_brownian.html#index-0"
>
pair_style brownian
</a>
</dt>
<dt><a
href=
"pair_buck.html#index-0"
>
pair_style buck
</a>
</dt>
<dt><a
href=
"pair_buck_long.html#index-0"
>
pair_style buck/long/coul/long
</a>
</dt>
<dt><a
href=
"pair_colloid.html#index-0"
>
pair_style colloid
</a>
</dt>
<dt><a
href=
"pair_comb.html#index-0"
>
pair_style comb
</a>
</dt>
<dt><a
href=
"pair_coul.html#index-0"
>
pair_style coul/cut
</a>
</dt>
<dt><a
href=
"pair_coul_diel.html#index-0"
>
pair_style coul/diel
</a>
</dt>
<dt><a
href=
"pair_dpd.html#index-0"
>
pair_style dpd
</a>
</dt>
<dt><a
href=
"pair_dsmc.html#index-0"
>
pair_style dsmc
</a>
</dt>
<dt><a
href=
"pair_eam.html#index-0"
>
pair_style eam
</a>
</dt>
<dt><a
href=
"pair_edip.html#index-0"
>
pair_style edip
</a>
</dt>
<dt><a
href=
"pair_eff.html#index-0"
>
pair_style eff/cut
</a>
</dt>
<dt><a
href=
"pair_eim.html#index-0"
>
pair_style eim
</a>
</dt>
<dt><a
href=
"pair_gauss.html#index-0"
>
pair_style gauss
</a>
</dt>
<dt><a
href=
"pair_gayberne.html#index-0"
>
pair_style gayberne
</a>
</dt>
<dt><a
href=
"pair_gran.html#index-0"
>
pair_style gran/hooke
</a>
</dt>
<dt><a
href=
"pair_hbond_dreiding.html#index-0"
>
pair_style hbond/dreiding/lj
</a>
</dt>
<dt><a
href=
"pair_hybrid.html#index-0"
>
pair_style hybrid
</a>
</dt>
<dt><a
href=
"pair_kim.html#index-0"
>
pair_style kim
</a>
</dt>
<dt><a
href=
"pair_lcbop.html#index-0"
>
pair_style lcbop
</a>
</dt>
<dt><a
href=
"pair_line_lj.html#index-0"
>
pair_style line/lj
</a>
</dt>
<dt><a
href=
"pair_list.html#index-0"
>
pair_style list
</a>
</dt>
<dt><a
href=
"pair_charmm.html#index-0"
>
pair_style lj/charmm/coul/charmm
</a>
</dt>
<dt><a
href=
"pair_class2.html#index-0"
>
pair_style lj/class2
</a>
</dt>
<dt><a
href=
"pair_lj_cubic.html#index-0"
>
pair_style lj/cubic
</a>
</dt>
<dt><a
href=
"pair_lj.html#index-0"
>
pair_style lj/cut
</a>
</dt>
<dt><a
href=
"pair_dipole.html#index-0"
>
pair_style lj/cut/dipole/cut
</a>
</dt>
<dt><a
href=
"pair_lj_soft.html#index-0"
>
pair_style lj/cut/soft
</a>
</dt>
<dt><a
href=
"pair_lj_expand.html#index-0"
>
pair_style lj/expand
</a>
</dt>
<dt><a
href=
"pair_gromacs.html#index-0"
>
pair_style lj/gromacs
</a>
</dt>
<dt><a
href=
"pair_lj_long.html#index-0"
>
pair_style lj/long/coul/long
</a>
</dt>
<dt><a
href=
"pair_mdf.html#index-0"
>
pair_style lj/mdf
</a>
</dt>
<dt><a
href=
"pair_sdk.html#index-0"
>
pair_style lj/sdk
</a>
</dt>
<dt><a
href=
"pair_lj_sf.html#index-0"
>
pair_style lj/sf
</a>
</dt>
<dt><a
href=
"pair_lj_smooth.html#index-0"
>
pair_style lj/smooth
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"pair_lj_smooth_linear.html#index-0"
>
pair_style lj/smooth/linear
</a>
</dt>
<dt><a
href=
"pair_lj96.html#index-0"
>
pair_style lj96/cut
</a>
</dt>
<dt><a
href=
"pair_lubricate.html#index-0"
>
pair_style lubricate
</a>
</dt>
<dt><a
href=
"pair_lubricateU.html#index-0"
>
pair_style lubricateU
</a>
</dt>
<dt><a
href=
"pair_meam.html#index-0"
>
pair_style meam
</a>
</dt>
<dt><a
href=
"pair_mgpt.html#index-0"
>
pair_style mgpt
</a>
</dt>
<dt><a
href=
"pair_mie.html#index-0"
>
pair_style mie/cut
</a>
</dt>
<dt><a
href=
"pair_morse.html#index-0"
>
pair_style morse
</a>
</dt>
<dt><a
href=
"pair_nb3b_harmonic.html#index-0"
>
pair_style nb3b/harmonic
</a>
</dt>
<dt><a
href=
"pair_nm.html#index-0"
>
pair_style nm/cut
</a>
</dt>
<dt><a
href=
"pair_none.html#index-0"
>
pair_style none
</a>
</dt>
<dt><a
href=
"pair_peri.html#index-0"
>
pair_style peri/pmb
</a>
</dt>
<dt><a
href=
"pair_polymorphic.html#index-0"
>
pair_style polymorphic
</a>
</dt>
<dt><a
href=
"pair_quip.html#index-0"
>
pair_style quip
</a>
</dt>
<dt><a
href=
"pair_reax.html#index-0"
>
pair_style reax
</a>
</dt>
<dt><a
href=
"pair_reax_c.html#index-0"
>
pair_style reax/c
</a>
</dt>
<dt><a
href=
"pair_resquared.html#index-0"
>
pair_style resquared
</a>
</dt>
<dt><a
href=
"pair_smd_hertz.html#index-0"
>
pair_style smd/hertz
</a>
</dt>
<dt><a
href=
"pair_smd_tlsph.html#index-0"
>
pair_style smd/tlsph
</a>
</dt>
<dt><a
href=
"pair_smd_triangulated_surface.html#index-0"
>
pair_style smd/tri_surface
</a>
</dt>
<dt><a
href=
"pair_smd_ulsph.html#index-0"
>
pair_style smd/ulsph
</a>
</dt>
<dt><a
href=
"pair_smtbq.html#index-0"
>
pair_style smtbq
</a>
</dt>
<dt><a
href=
"pair_snap.html#index-0"
>
pair_style snap
</a>
</dt>
<dt><a
href=
"pair_soft.html#index-0"
>
pair_style soft
</a>
</dt>
<dt><a
href=
"pair_sph_heatconduction.html#index-0"
>
pair_style sph/heatconduction
</a>
</dt>
<dt><a
href=
"pair_sph_idealgas.html#index-0"
>
pair_style sph/idealgas
</a>
</dt>
<dt><a
href=
"pair_sph_lj.html#index-0"
>
pair_style sph/lj
</a>
</dt>
<dt><a
href=
"pair_sph_rhosum.html#index-0"
>
pair_style sph/rhosum
</a>
</dt>
<dt><a
href=
"pair_sph_taitwater.html#index-0"
>
pair_style sph/taitwater
</a>
</dt>
<dt><a
href=
"pair_sph_taitwater_morris.html#index-0"
>
pair_style sph/taitwater/morris
</a>
</dt>
<dt><a
href=
"pair_srp.html#index-0"
>
pair_style srp
</a>
</dt>
<dt><a
href=
"pair_sw.html#index-0"
>
pair_style sw
</a>
</dt>
<dt><a
href=
"pair_table.html#index-0"
>
pair_style table
</a>
</dt>
<dt><a
href=
"pair_tersoff.html#index-0"
>
pair_style tersoff
</a>
</dt>
<dt><a
href=
"pair_tersoff_mod.html#index-0"
>
pair_style tersoff/mod
</a>
</dt>
<dt><a
href=
"pair_tersoff_zbl.html#index-0"
>
pair_style tersoff/zbl
</a>
</dt>
<dt><a
href=
"pair_thole.html#index-0"
>
pair_style thole
</a>
</dt>
<dt><a
href=
"pair_tri_lj.html#index-0"
>
pair_style tri/lj
</a>
</dt>
<dt><a
href=
"pair_vashishta.html#index-0"
>
pair_style vashishta
</a>
</dt>
<dt><a
href=
"pair_yukawa.html#index-0"
>
pair_style yukawa
</a>
</dt>
<dt><a
href=
"pair_yukawa_colloid.html#index-0"
>
pair_style yukawa/colloid
</a>
</dt>
<dt><a
href=
"pair_zbl.html#index-0"
>
pair_style zbl
</a>
</dt>
<dt><a
href=
"pair_write.html#index-0"
>
pair_write
</a>
</dt>
<dt><a
href=
"partition.html#index-0"
>
partition
</a>
</dt>
<dt><a
href=
"prd.html#index-0"
>
prd
</a>
</dt>
<dt><a
href=
"print.html#index-0"
>
print
</a>
</dt>
<dt><a
href=
"processors.html#index-0"
>
processors
</a>
</dt>
<dt><a
href=
"python.html#index-0"
>
python
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"Q"
>
Q
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"quit.html#index-0"
>
quit
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"R"
>
R
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"read_data.html#index-0"
>
read_data
</a>
</dt>
<dt><a
href=
"read_dump.html#index-0"
>
read_dump
</a>
</dt>
<dt><a
href=
"read_restart.html#index-0"
>
read_restart
</a>
</dt>
<dt><a
href=
"region.html#index-0"
>
region
</a>
</dt>
<dt><a
href=
"replicate.html#index-0"
>
replicate
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"rerun.html#index-0"
>
rerun
</a>
</dt>
<dt><a
href=
"reset_timestep.html#index-0"
>
reset_timestep
</a>
</dt>
<dt><a
href=
"restart.html#index-0"
>
restart
</a>
</dt>
<dt><a
href=
"run.html#index-0"
>
run
</a>
</dt>
<dt><a
href=
"run_style.html#index-0"
>
run_style
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"S"
>
S
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"set.html#index-0"
>
set
</a>
</dt>
<dt><a
href=
"shell.html#index-0"
>
shell
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"special_bonds.html#index-0"
>
special_bonds
</a>
</dt>
<dt><a
href=
"suffix.html#index-0"
>
suffix
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"T"
>
T
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"tad.html#index-0"
>
tad
</a>
</dt>
<dt><a
href=
"temper.html#index-0"
>
temper
</a>
</dt>
<dt><a
href=
"thermo.html#index-0"
>
thermo
</a>
</dt>
<dt><a
href=
"thermo_modify.html#index-0"
>
thermo_modify
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"thermo_style.html#index-0"
>
thermo_style
</a>
</dt>
<dt><a
href=
"timer.html#index-0"
>
timer
</a>
</dt>
<dt><a
href=
"timestep.html#index-0"
>
timestep
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"U"
>
U
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"uncompute.html#index-0"
>
uncompute
</a>
</dt>
<dt><a
href=
"undump.html#index-0"
>
undump
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"unfix.html#index-0"
>
unfix
</a>
</dt>
<dt><a
href=
"units.html#index-0"
>
units
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"V"
>
V
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"variable.html#index-0"
>
variable
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"velocity.html#index-0"
>
velocity
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"W"
>
W
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"write_data.html#index-0"
>
write_data
</a>
</dt>
<dt><a
href=
"write_dump.html#index-0"
>
write_dump
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"write_restart.html#index-0"
>
write_restart
</a>
</dt>
</dl></td>
</tr></table>
</div>
</div>
<footer>
<hr/>
<div
role=
"contentinfo"
>
<p>
©
Copyright 2013 Sandia Corporation.
</p>
</div>
Built with
<a
href=
"http://sphinx-doc.org/"
>
Sphinx
</a>
using a
<a
href=
"https://github.com/snide/sphinx_rtd_theme"
>
theme
</a>
provided by
<a
href=
"https://readthedocs.org"
>
Read the Docs
</a>
.
</footer>
</div>
</div>
</section>
</div>
<script
type=
"text/javascript"
>
var
DOCUMENTATION_OPTIONS
=
{
URL_ROOT
:
'./'
,
VERSION
:
'15 Dec 2015'
,
COLLAPSE_INDEX
:
false
,
FILE_SUFFIX
:
'.html'
,
HAS_SOURCE
:
true
};
</script>
<script
type=
"text/javascript"
src=
"_static/jquery.js"
></script>
<script
type=
"text/javascript"
src=
"_static/underscore.js"
></script>
<script
type=
"text/javascript"
src=
"_static/doctools.js"
></script>
<script
type=
"text/javascript"
src=
"https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2/js/jquery-1.11.0.min.js"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2/js/lightbox.min.js"
></script>
<script
type=
"text/javascript"
src=
"_static/sphinxcontrib-images/LightBox2/lightbox2-customize/jquery-noconflict.js"
></script>
<script
type=
"text/javascript"
src=
"_static/js/theme.js"
></script>
<script
type=
"text/javascript"
>
jQuery
(
function
()
{
SphinxRtdTheme
.
StickyNav
.
enable
();
});
</script>
</body>
</html>
Event Timeline
Log In to Comment