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pair_list.h
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Sun, Oct 13, 02:48
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rLAMMPS lammps
pair_list.h
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/* -*- c++ -*- ----------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
http://lammps.sandia.gov, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#ifdef PAIR_CLASS
PairStyle
(
list
,
PairList
)
#else
#ifndef LMP_PAIR_LIST_H
#define LMP_PAIR_LIST_H
#include "pair.h"
namespace
LAMMPS_NS
{
class
PairList
:
public
Pair
{
public:
PairList
(
class
LAMMPS
*
);
virtual
~
PairList
();
virtual
void
compute
(
int
,
int
);
virtual
void
settings
(
int
,
char
**
);
virtual
void
coeff
(
int
,
char
**
);
virtual
void
init_style
();
virtual
double
init_one
(
int
,
int
);
virtual
double
memory_usage
();
protected:
void
allocate
();
enum
{
NONE
=
0
,
HARM
,
MORSE
,
LJ126
};
// potential specific parameters
struct
harm_p
{
double
k
,
r0
;
};
struct
morse_p
{
double
d0
,
alpha
,
r0
;
};
struct
lj126_p
{
double
epsilon
,
sigma
;
};
union
parm_u
{
struct
harm_p
harm
;
struct
morse_p
morse
;
struct
lj126_p
lj126
;
};
typedef
struct
{
tagint
id1
,
id2
;
// global atom ids
double
cutsq
;
// cutoff**2 for this pair
double
offset
;
// energy offset
union
parm_u
parm
;
// parameters for style
}
list_parm_t
;
protected:
double
cut_global
;
// global cutoff distance
int
*
style
;
// list of styles for pair interactions
list_parm_t
*
params
;
// lisf of pair interaction parameters
int
npairs
;
// # of atom pairs in global list
int
check_flag
;
// 1 if checking for missing pairs
};
}
#endif
#endif
/* ERROR/WARNING messages:
E: Not all pairs processed in pair_style list
Not all interacting pairs for which coefficients were found. This can be intentional
and then you need to set the 'nocheck' option. If not, it usually means that the
communication cutoff is too small. This can be ameliorated by either increasing
the cutoff in the pair_style command or the communication cutoff.
E: Illegal ... command
Self-explanatory. Check the input script syntax and compare to the
documentation for the command. You can use -echo screen as a
command-line option when running LAMMPS to see the offending line.
E: Cannot open pair list file
Self-explanatory. The file with the list of pairs cannot be open for reading.
Check the path and permissions.
E: Incorrectly formatted ...
Self-explanatory. The content of the pair list file does not match the documented
format. Please re-read the documentation and carefully compare it to your file.
E: Unknown pair list potential style
Self-explanatory. You requested a potential type that is not yet implemented or have a typo.
E: Incorrect args for pair coefficients
Self-explanatory. Check the input script or data file.
E: Pair style list requires atom IDs
Self-explanatory. The pairs in the list are identified via atom IDs, so they need to be present.
E: Pair style list requires an atom map
Self-explanatory. Atoms are looked up via an atom map. Create one using the atom_style map command.
*/
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