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WriteDataFile.c
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Created
Sun, Oct 20, 03:05
Size
8 KB
Mime Type
text/x-c
Expires
Tue, Oct 22, 03:05 (2 d)
Engine
blob
Format
Raw Data
Handle
21805999
Attached To
rLAMMPS lammps
WriteDataFile.c
View Options
/*
* This function creates and writes the data file to be used with LAMMPS
*/
#include "Msi2LMP2.h"
#include "Forcefield.h"
void
WriteDataFile
(
FILE
*
DatF
,
char
*
nameroot
,
int
forcefield
)
{
int
i
,
j
,
k
,
m
;
char
line
[
MAX_LINE_LENGTH
];
if
(
forcefield
==
1
)
total_no_angle_angles
=
0
;
fprintf
(
DatF
,
"LAMMPS data file for %s
\n\n
"
,
nameroot
);
fprintf
(
DatF
,
" %6d atoms
\n
"
,
total_no_atoms
);
fprintf
(
DatF
,
" %6d bonds
\n
"
,
total_no_bonds
);
fprintf
(
DatF
,
" %6d angles
\n
"
,
total_no_angles
);
fprintf
(
DatF
,
" %6d dihedrals
\n
"
,
total_no_dihedrals
);
fprintf
(
DatF
,
" %6d impropers
\n
"
,
total_no_oops
+
total_no_angle_angles
);
fprintf
(
DatF
,
"
\n
"
);
fprintf
(
DatF
,
" %3d atom types
\n
"
,
no_atom_types
);
if
(
no_bond_types
>
0
)
fprintf
(
DatF
,
" %3d bond types
\n
"
,
no_bond_types
);
if
(
no_angle_types
>
0
)
fprintf
(
DatF
,
" %3d angle types
\n
"
,
no_angle_types
);
if
(
no_dihedral_types
>
0
)
fprintf
(
DatF
,
" %3d dihedral types
\n
"
,
no_dihedral_types
);
if
(
forcefield
>
1
)
{
if
((
no_oop_types
+
no_angleangle_types
)
>
0
)
fprintf
(
DatF
,
" %3d improper types
\n
"
,
no_oop_types
+
no_angleangle_types
);
}
else
{
if
(
no_oop_types
>
0
)
fprintf
(
DatF
,
" %3d improper types
\n
"
,
no_oop_types
);
}
fprintf
(
DatF
,
"
\n
"
);
fprintf
(
DatF
,
" %15.9f %15.9f xlo xhi
\n
"
,
pbc
[
0
],
pbc
[
3
]);
fprintf
(
DatF
,
" %15.9f %15.9f ylo yhi
\n
"
,
pbc
[
1
],
pbc
[
4
]);
fprintf
(
DatF
,
" %15.9f %15.9f zlo zhi
\n
"
,
pbc
[
2
],
pbc
[
5
]);
/* MASSES */
fprintf
(
DatF
,
"
\n
Masses
\n\n
"
);
for
(
k
=
0
;
k
<
no_atom_types
;
k
++
)
fprintf
(
DatF
,
" %3d %10.6f
\n
"
,
k
+
1
,
atomtypes
[
k
].
mass
);
fprintf
(
DatF
,
"
\n
"
);
/* COEFFICIENTS */
fprintf
(
DatF
,
"Nonbond Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_atom_types
;
i
++
)
{
fprintf
(
DatF
,
" %3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
2
;
j
++
)
fprintf
(
DatF
,
"%14.10f "
,
atomtypes
[
i
].
params
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
if
(
no_bond_types
>
0
)
{
if
(
forcefield
==
1
)
m
=
2
;
if
(
forcefield
==
2
)
m
=
4
;
fprintf
(
DatF
,
"Bond Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_bond_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
m
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
bondtypes
[
i
].
params
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
}
if
(
no_angle_types
>
0
)
{
if
(
forcefield
==
1
)
m
=
2
;
if
(
forcefield
==
2
)
m
=
4
;
fprintf
(
DatF
,
"Angle Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_angle_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
m
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
angletypes
[
i
].
params
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
}
if
(
no_dihedral_types
>
0
)
{
if
(
forcefield
==
1
)
m
=
3
;
if
(
forcefield
==
2
)
m
=
6
;
fprintf
(
DatF
,
"Dihedral Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_dihedral_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
m
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
dihedraltypes
[
i
].
params
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
}
if
(
forcefield
==
1
)
{
if
(
no_oop_types
>
0
)
{
fprintf
(
DatF
,
"Improper Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_oop_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
3
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
ooptypes
[
i
].
params
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
}
}
else
if
(
forcefield
==
2
)
{
if
((
no_oop_types
+
no_angleangle_types
)
>
0
)
{
fprintf
(
DatF
,
"Improper Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_oop_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
2
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
ooptypes
[
i
].
params
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
for
(
i
=
0
;
i
<
no_angleangle_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
no_oop_types
+
1
);
for
(
j
=
0
;
j
<
2
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
0.0
);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
}
}
if
(
forcefield
==
2
)
{
if
(
no_angle_types
>
0
)
{
fprintf
(
DatF
,
"BondBond Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_angle_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
3
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
angletypes
[
i
].
bondbond_cross_term
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
fprintf
(
DatF
,
"BondAngle Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_angle_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
4
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
angletypes
[
i
].
bondangle_cross_term
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
}
if
((
no_oop_types
+
no_angleangle_types
)
>
0
)
{
fprintf
(
DatF
,
"AngleAngle Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_oop_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
6
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
ooptypes
[
i
].
angleangle_params
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
for
(
i
=
0
;
i
<
no_angleangle_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
no_oop_types
+
1
);
for
(
j
=
0
;
j
<
6
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
angleangletypes
[
i
].
params
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
}
if
(
no_dihedral_types
>
0
)
{
fprintf
(
DatF
,
"AngleAngleTorsion Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_dihedral_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
3
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
dihedraltypes
[
i
].
angleangledihedral_cross_term
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
fprintf
(
DatF
,
"EndBondTorsion Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_dihedral_types
;
i
++
)
{
fprintf
(
DatF
,
"%i "
,
i
+
1
);
for
(
j
=
0
;
j
<
8
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
dihedraltypes
[
i
].
endbonddihedral_cross_term
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
fprintf
(
DatF
,
"MiddleBondTorsion Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_dihedral_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
4
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
dihedraltypes
[
i
].
midbonddihedral_cross_term
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
fprintf
(
DatF
,
"BondBond13 Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_dihedral_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
3
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
dihedraltypes
[
i
].
bond13_cross_term
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
fprintf
(
DatF
,
"AngleTorsion Coeffs
\n\n
"
);
for
(
i
=
0
;
i
<
no_dihedral_types
;
i
++
)
{
fprintf
(
DatF
,
"%3i "
,
i
+
1
);
for
(
j
=
0
;
j
<
8
;
j
++
)
fprintf
(
DatF
,
"%10.4f "
,
dihedraltypes
[
i
].
angledihedral_cross_term
[
j
]);
fprintf
(
DatF
,
"
\n
"
);
}
fprintf
(
DatF
,
"
\n
"
);
}
}
/*--------------------------------------------------------------------*/
/* ATOMS */
fprintf
(
DatF
,
"Atoms
\n\n
"
);
for
(
k
=
0
;
k
<
total_no_atoms
;
k
++
)
{
fprintf
(
DatF
,
" %6i %6i %3i %9.6f %15.9f %15.9f %15.9f
\n
"
,
k
+
1
,
atoms
[
k
].
molecule
,
atoms
[
k
].
type
+
1
,
atoms
[
k
].
q
,
atoms
[
k
].
x
[
0
],
atoms
[
k
].
x
[
1
],
atoms
[
k
].
x
[
2
]);
}
fprintf
(
DatF
,
"
\n
"
);
/***** BONDS *****/
if
(
total_no_bonds
>
0
)
{
fprintf
(
DatF
,
"Bonds
\n\n
"
);
for
(
k
=
0
;
k
<
total_no_bonds
;
k
++
)
fprintf
(
DatF
,
"%6i %3i %6i %6i
\n
"
,
k
+
1
,
bonds
[
k
].
type
+
1
,
bonds
[
k
].
members
[
0
]
+
1
,
bonds
[
k
].
members
[
1
]
+
1
);
fprintf
(
DatF
,
"
\n
"
);
}
/***** ANGLES *****/
if
(
total_no_angles
>
0
)
{
fprintf
(
DatF
,
"Angles
\n\n
"
);
for
(
k
=
0
;
k
<
total_no_angles
;
k
++
)
fprintf
(
DatF
,
"%6i %3i %6i %6i %6i
\n
"
,
k
+
1
,
angles
[
k
].
type
+
1
,
angles
[
k
].
members
[
0
]
+
1
,
angles
[
k
].
members
[
1
]
+
1
,
angles
[
k
].
members
[
2
]
+
1
);
fprintf
(
DatF
,
"
\n
"
);
}
/***** TORSIONS *****/
if
(
total_no_dihedrals
>
0
)
{
fprintf
(
DatF
,
"Dihedrals
\n\n
"
);
for
(
k
=
0
;
k
<
total_no_dihedrals
;
k
++
)
fprintf
(
DatF
,
"%6i %3i %6i %6i %6i %6i
\n
"
,
k
+
1
,
dihedrals
[
k
].
type
+
1
,
dihedrals
[
k
].
members
[
0
]
+
1
,
dihedrals
[
k
].
members
[
1
]
+
1
,
dihedrals
[
k
].
members
[
2
]
+
1
,
dihedrals
[
k
].
members
[
3
]
+
1
);
fprintf
(
DatF
,
"
\n
"
);
}
/***** OUT-OF-PLANES *****/
if
(
total_no_oops
+
total_no_angle_angles
>
0
)
{
fprintf
(
DatF
,
"Impropers
\n\n
"
);
for
(
k
=
0
;
k
<
total_no_oops
;
k
++
)
fprintf
(
DatF
,
"%6i %3i %6i %6i %6i %6i
\n
"
,
k
+
1
,
oops
[
k
].
type
+
1
,
oops
[
k
].
members
[
0
]
+
1
,
oops
[
k
].
members
[
1
]
+
1
,
oops
[
k
].
members
[
2
]
+
1
,
oops
[
k
].
members
[
3
]
+
1
);
if
(
forcefield
==
2
)
{
for
(
k
=
0
;
k
<
total_no_angle_angles
;
k
++
)
fprintf
(
DatF
,
"%6i %3i %6i %6i %6i %6i
\n
"
,
k
+
total_no_oops
+
1
,
angleangles
[
k
].
type
+
no_oop_types
+
1
,
angleangles
[
k
].
members
[
0
]
+
1
,
angleangles
[
k
].
members
[
1
]
+
1
,
angleangles
[
k
].
members
[
2
]
+
1
,
angleangles
[
k
].
members
[
3
]
+
1
);
}
fprintf
(
DatF
,
"
\n
"
);
}
}
Event Timeline
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