LAMMPS (30 Jun 2012) # Gay-Berne benchmark # biaxial ellipsoid mesogens in isotropic phase # shape: 2 1.5 1 # cutoff 4.0 with skin 0.8 # NPT, T=2.4, P=8.0 units lj atom_style ellipsoid # creation #lattice sc 0.22 #region box block 0 32 0 32 0 32 #create_box 1 box #create_atoms 1 box #set group all quat/random 982381 read_data data.gb orthogonal box = (2.19575 2.19575 2.19575) to (50.8124 50.8124 50.8124) 1 by 1 by 1 MPI processor grid 32768 atoms 32768 velocities 32768 ellipsoids compute rot all temp/asphere group spheroid type 1 32768 atoms in group spheroid variable dof equal count(spheroid)+3 compute_modify rot extra ${dof} compute_modify rot extra 32771 velocity all create 2.4 41787 loop geom pair_style gayberne 1.0 3.0 1.0 4.0 pair_coeff 1 1 1.0 1.0 1.0 0.5 0.2 1.0 0.5 0.2 neighbor 0.8 bin timestep 0.002 thermo 20 # equilibration #fix 1 all npt/asphere temp 2.4 2.4 0.1 iso 5.0 8.0 0.1 #compute_modify 1_temp extra ${dof} #run 100 #write_restart tmp.restart fix 1 all npt/asphere temp 2.4 2.4 0.2 iso 8.0 8.0 0.2 run 100 Memory usage per processor = 26.9944 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 2.4 0.50438568 0 4.1042758 6.7818168 114909.09 20 2.7357818 0.26045557 0 4.364003 6.8299368 111715.16 40 2.9201296 0.22570735 0 4.605768 7.0767907 109473.23 60 2.9820039 0.19733812 0 4.6702075 7.1507065 108393.77 80 3.0148529 0.15114819 0 4.6732895 7.1699502 107672.24 100 3.0206703 0.10567623 0 4.6365433 7.154345 107184.83 Loop time of 72.0749 on 1 procs for 100 steps with 32768 atoms Pair time (%) = 70.3565 (97.6157) Neigh time (%) = 0.493162 (0.684236) Comm time (%) = 0.132031 (0.183186) Outpt time (%) = 0.000532866 (0.000739322) Other time (%) = 1.09272 (1.5161) Nlocal: 32768 ave 32768 max 32768 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 25669 ave 25669 max 25669 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 2.30433e+06 ave 2.30433e+06 max 2.30433e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 2304332 Ave neighs/atom = 70.3226 Neighbor list builds = 6 Dangerous builds = 3