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lammps/examples/USER/atc/hardy/in.consistency
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in.consistency
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# we should see:
# * H = Grad u exact except at the free boundaries where we get u at CM != node
# * \Delta W / \Delta F = P converging with smaller load step / dt
# since W and P are consistent via the balance laws thanks to Hard
echo both
log consistency.log
units metal
atom_style atomic
atom_modify sort 0 1
variable L equal 16
variable E equal 8
# create domain
lattice fcc 3.615 origin 0.25 0.25 0.25
region mdRegion block 0 $L -3 3 -3 3
boundary p p p
create_box 1 mdRegion
# create atoms
create_atoms 1 region mdRegion
mass 1 63.550
group internal region mdRegion
# specify inter-atomic potential
pair_style eam
pair_coeff * * ../../../../potentials/Cu_u3.eam
# specify neighbor/re-neighboring parameters
neighbor 0.3 bin
#neigh_modify every 10 delay 0 check no
neigh_modify delay 10000 check no
min_modify line quadratic
minimize 1.e-10 1.e-10 100000 1000000
# ID group atc PhysicsType ParameterFile
fix AtC all atc hardy
fix_modify AtC transfer internal type internal
fix_modify AtC fem create mesh $E 1 1 mdRegion f p p
fix_modify AtC transfer fields none
fix_modify AtC transfer fields add density displacement stress energy eshelby_stress temperature
fix_modify AtC transfer gradients add displacement
fix_modify AtC transfer set reference_potential_energy
#fix_modify AtC transfer hardy_reset 1
# output
thermo 10
thermo_style custom step pe ke press lx ly lz
fix_modify AtC transfer output consistencyFE 1 text tensor_components
fix_modify AtC transfer atomic_output consistencyMD 1
# displace atoms
# NOTE we need to figure out how to output post minimize w/o a "run"
# or try to interface with "dump"
# this is fine, no integrator is being used
timestep 0.0
# initial before minimization?
run 1
# increment
variable n equal 10
variable i loop $n
# NOTE this does not generate KE
label loop_i
#variable s equal 0.02*$i/$n*$L
#print ">>> step $i, displacement $s"
change_box all x scale 1.001 remap
minimize 1.e-10 1.e-10 100000 1000000
velocity all set 0 0 0
run 1
next i
jump in.consistency loop_i
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