			This directory contains example data and input files
			and utility scripts for the oxDNA coarse-grained model
			for DNA.

			/examples/duplex1:
			Input, data and log files for a DNA duplex (double-stranded DNA)
			consisiting of 5 base pairs. The duplex contains two strands with
			complementary base pairs. The topology is

			A - A - A - A - A
			\| \| \| \| \|
			T - T - T - T - T

			/examples/duplex2:
			Input, data and log files for a nicked DNA duplex (double-stranded DNA)
			consisiting of 8 base pairs. The duplex contains strands with
			complementary base pairs, but the backbone on one side is not continuous:
			two individual strands on one side form a duplex with a longer single
			strand on the other side. The topology is

			A - A - A - A - A - A - A - A
			\| \| \| \| \| \| \| \|
			T - T - T T - T - T - T - T

			/util:
			This directory contains a simple python setup tool which creates
			single straight or helical DNA strands, DNA duplexes or arrays of DNA
			duplexes.

lammps/examples/USER/cgdna/README
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