units lj dimension 3 boundary p p p atom_style atomic # truncated and shifted LJ potential pair_style lj/cut 2.5 pair_modify shift yes read_data data.halfhalf pair_coeff 1 1 1.0 1.0 2.5 mass 1 1.0 # simulation parameters neighbor 0.6 bin timestep 0.004 run_style verlet velocity all create 0.8 1 mom yes rot yes fix ensemble all npt temp 0.8 0.8 4.0 z 2.185 2.185 8.0 fix 100 all momentum 100 linear 1 1 1 # harmonic rho_k bias-field # nx ny nz K a fix bias all rhok 16 0 0 4.0 26.00 # output U_bias rho_k_RE rho_k_IM |rho_k| thermo_style custom step temp pzz pe lz f_bias f_bias[1] f_bias[2] f_bias[3] thermo 50 # dump dumpXYZ all xyz 500 traj.xyz # NOTE: run reduced for demonstration purposes # run 50000 run 5000