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lammps/examples/rigid/log.rigid.poems.1Oct06.linux.1
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LAMMPS (1 Oct 2006)
# Simple rigid body system
units lj
atom_style atomic
pair_style lj/cut 2.5
read_data data.rigid
1 by 1 by 1 processor grid
81 atoms
velocity all create 100.0 4928459
# unconnected bodies
#group clump1 id <> 1 9
#group clump2 id <> 10 18
#group clump3 id <> 19 27
#group clump4 id <> 28 36
#group clump5 id <> 37 45
#group clump6 id <> 46 54
#group clump7 id <> 55 63
#group clump8 id <> 64 72
#group clump9 id <> 73 81
#fix 1 all rigid group clump1 clump2 clump3 clump4 clump5 # clump6 clump7 clump8 clump9
# 1 chain of connected bodies
group clump1 id <> 1 9
9 atoms in group clump1
group clump2 id <> 9 18
10 atoms in group clump2
group clump3 id <> 18 27
10 atoms in group clump3
group clump4 id <> 27 36
10 atoms in group clump4
group clump5 id <> 36 45
10 atoms in group clump5
group clump6 id <> 45 54
10 atoms in group clump6
group clump7 id <> 54 63
10 atoms in group clump7
group clump8 id <> 63 72
10 atoms in group clump8
group clump9 id <> 72 81
10 atoms in group clump9
fix 1 all poems group clump1 clump2 clump3 clump4 clump5 clump6 clump7 clump8 clump9
1 clusters, 9 bodies, 8 joints, 81 atoms
# 2 chains of connected bodies
#group clump1 id <> 1 9
#group clump2 id <> 9 18
#group clump3 id <> 18 27
#group clump4 id <> 27 36
#group clump5 id <> 37 45
#group clump6 id <> 45 54
#group clump7 id <> 54 63
#group clump8 id <> 63 72
#group clump9 id <> 72 81
#fix 1 all poems group clump1 clump2 clump3 clump4
#fix 2 all poems group clump5 clump6 clump7 clump8 clump9
neigh_modify exclude group clump1 clump1
neigh_modify exclude group clump2 clump2
neigh_modify exclude group clump3 clump3
neigh_modify exclude group clump4 clump4
neigh_modify exclude group clump5 clump5
neigh_modify exclude group clump6 clump6
neigh_modify exclude group clump7 clump7
neigh_modify exclude group clump8 clump8
neigh_modify exclude group clump9 clump9
thermo 100
dump 1 all atom 50 dump.rigid
timestep 0.0001
thermo 50
run 10000
Memory usage per processor = 1.50473 Mbytes
Step Temp E_pair E_mol TotEng Press
0 217.7783 3430.3907 0 3466.6871 -2.7403788
50 13679.637 1404.2468 0 3684.1863 12.446066
100 16777.225 888.87665 0 3685.0808 -31.828677
150 19595.365 418.45042 0 3684.3446 40.709078
200 18524.188 596.47273 0 3683.8375 -0.8159371
250 21015.789 180.96521 0 3683.5967 -10.042469
300 20785.513 219.25314 0 3683.5053 2.6452719
350 21072.46 171.2554 0 3683.3321 7.0609024
400 19956.414 356.36381 0 3682.4328 19.320259
450 20724.42 227.73284 0 3681.8028 8.1259249
500 20152.578 322.71466 0 3681.4777 5.4929878
550 20017.022 345.29701 0 3681.4673 5.4661666
600 17897.743 698.72196 0 3681.6791 3.2854742
650 17297.758 796.60256 0 3679.5623 15.191113
700 18581.934 584.29715 0 3681.2861 5.1588289
750 21774.158 52.821062 0 3681.8474 -10.775664
800 21604.055 81.188546 0 3681.8644 -3.2045743
850 17821.483 711.53827 0 3681.7854 7.4384278
900 21033.292 175.98127 0 3681.5299 -16.345167
950 20968.166 186.59847 0 3681.2929 -2.330456
1000 20490.66 266.19375 0 3681.3037 11.787983
1050 20222.396 310.94072 0 3681.34 -8.3459539
1100 21321.687 127.61533 0 3681.2299 -1.2184717
1150 20849.582 206.01695 0 3680.9472 -0.86699147
1200 21815.003 45.317414 0 3681.1512 1.5988314
1250 18655.437 572.41453 0 3681.654 10.064078
1300 20780.781 217.36507 0 3680.8286 6.0538618
1350 20558.971 254.36483 0 3680.8601 -3.6773945
1400 21485.029 99.812915 0 3680.6511 -16.185473
1450 21771.107 52.159616 0 3680.6775 -2.4756671
1500 21520.948 93.503919 0 3680.3286 2.1023577
1550 21351.418 121.68136 0 3680.2511 5.5159939
1600 20778.805 216.92179 0 3680.0559 15.08919
1650 21477.638 100.21841 0 3679.8247 -1.1045676
1700 18501.338 596.47934 0 3680.0357 -15.679693
1750 18563.641 587.34802 0 3681.2882 33.532224
1800 19110.184 494.82361 0 3679.8543 18.024052
1850 21364.189 119.23567 0 3679.9339 2.5290982
1900 20146.623 322.14928 0 3679.9197 5.7313631
1950 20692.672 231.25329 0 3680.0319 4.2977763
2000 20943.904 189.11224 0 3679.7629 -22.644967
2050 19668.032 401.83413 0 3679.8394 3.6250579
2100 20280.405 299.76781 0 3679.8353 7.4807458
2150 19181.776 483.53587 0 3680.4986 22.622025
2200 21300.275 130.68616 0 3680.732 4.7099237
2250 20486.714 266.67751 0 3681.1298 -8.6469998
2300 18652.596 572.33559 0 3681.1016 -5.2628292
2350 21513.777 95.572407 0 3681.202 -9.3648592
2400 21465.849 103.63471 0 3681.2763 -29.550454
2450 20100.961 332.12793 0 3682.2881 35.70449
2500 20765.206 221.53187 0 3682.3996 -12.452833
2550 20442.965 275.09622 0 3682.2571 -22.450229
2600 21465.612 104.67793 0 3682.2799 -10.089769
2650 20840.301 208.97723 0 3682.3607 5.0962323
2700 18566.291 588.29119 0 3682.6731 22.314898
2750 20859.619 205.61533 0 3682.2184 -8.4111045
2800 21152.619 156.74913 0 3682.1856 -7.0841069
2850 17034.124 843.41557 0 3682.4362 31.940811
2900 19433.377 443.20884 0 3682.105 8.154109
2950 20759.601 222.07863 0 3682.0121 0.94860156
3000 20639.898 242.09747 0 3682.0805 -5.0441986
3050 18165.856 654.36056 0 3682.0032 2.0390617
3100 20352.11 290.03669 0 3682.055 -6.4787936
3150 20081.761 335.00558 0 3681.9657 12.403377
3200 20312.335 296.00002 0 3681.3892 6.6521722
3250 20715.141 228.97633 0 3681.4998 0.29254419
3300 21033.583 176.05884 0 3681.656 -0.82749027
3350 20555.686 255.51202 0 3681.4596 -2.6224778
3400 20517.425 261.8331 0 3681.404 5.7965799
3450 21550.686 89.629485 0 3681.4104 1.7369192
3500 18213.776 648.60728 0 3684.2366 25.179084
3550 20181.817 317.95514 0 3681.5914 12.030205
3600 20064.929 336.99155 0 3681.1464 0.46703252
3650 20548.763 256.74258 0 3681.5364 5.6316258
3700 21695.436 65.821167 0 3681.7272 -4.046094
3750 20339.586 291.86983 0 3681.8009 -6.9843488
3800 20556.293 255.92096 0 3681.9698 -2.4803781
3850 20446.56 274.11342 0 3681.8735 -4.7609085
3900 19011.276 513.44779 0 3681.9938 17.583808
3950 20584.829 250.52631 0 3681.3311 2.2444895
4000 20971.029 185.41558 0 3680.5871 -20.990511
4050 18377.385 617.09077 0 3679.9882 7.178804
4100 16844.266 873.0443 0 3680.4219 8.8851101
4150 21182.287 149.12309 0 3679.5043 -5.7838368
4200 20081.816 332.50466 0 3679.4741 11.141881
4250 16039.426 1006.3467 0 3679.5845 19.421993
4300 21194.532 147.15003 0 3679.572 6.1066469
4350 18629.518 575.11052 0 3680.0302 -2.7680889
4400 20141.896 323.11764 0 3680.1004 -12.100591
4450 19515.022 427.59265 0 3680.0963 -11.941524
4500 20713.779 227.58503 0 3679.8816 -2.0762411
4550 20534.825 257.13203 0 3679.6029 3.9506072
4600 16110.778 995.49492 0 3680.6245 39.113403
4650 20050.377 337.60184 0 3679.3313 4.0339243
4700 20714.3 226.37364 0 3678.757 1.6928839
4750 20397.838 278.68649 0 3678.3261 0.72631759
4800 21090.67 163.3683 0 3678.4799 -7.4766616
4850 20410.173 276.47646 0 3678.1719 -0.48404227
4900 17341.87 787.80944 0 3678.1212 4.7714063
4950 20335.7 289.09005 0 3678.3734 -10.795568
5000 20001.497 344.2494 0 3677.8322 14.312823
5050 17359.581 784.91275 0 3678.1762 -15.0609
5100 17595.237 745.73589 0 3678.2753 -8.3672887
5150 17097.012 827.91859 0 3677.4206 15.446196
5200 18757.137 552.19192 0 3678.3814 -6.9635082
5250 20388.016 279.39834 0 3677.401 20.142181
5300 19965.35 350.31245 0 3677.8707 -17.821737
5350 18436.118 605.83431 0 3678.5207 0.84914232
5400 20415.986 276.61546 0 3679.2799 -0.0037894847
5450 20973.245 184.18908 0 3679.73 1.5256563
5500 21320.183 126.74576 0 3680.1096 2.2287329
5550 20328.455 292.4549 0 3680.5307 4.674135
5600 19512.862 428.45854 0 3680.6021 2.2858232
5650 15118.355 1162.6262 0 3682.352 66.775105
5700 21062.257 171.98221 0 3682.3583 -0.20268203
5750 21441.233 109.32963 0 3682.8684 -12.340852
5800 21012.806 181.33239 0 3683.4666 -7.1699728
5850 21023.089 179.80114 0 3683.6494 3.8101095
5900 21015.077 181.14388 0 3683.6567 -1.176308
5950 18343.926 626.46055 0 3683.7815 15.79278
6000 20984.465 186.52409 0 3683.935 -6.1829013
6050 20941.64 193.97543 0 3684.2488 1.2909073
6100 19546.675 426.86545 0 3684.6447 -0.41477554
6150 21264.032 140.55982 0 3684.5651 -4.953571
6200 20343.321 293.92487 0 3684.4784 -4.8781976
6250 20109.575 333.08805 0 3684.6839 -0.23986631
6300 19589.511 419.53578 0 3684.4543 18.387721
6350 20331.681 295.43346 0 3684.0469 -2.6072047
6400 21210.3 148.28185 0 3683.3319 -13.224448
6450 19636.964 407.42287 0 3680.2503 26.945373
6500 21158.461 156.82542 0 3683.2355 -5.558554
6550 21937.478 26.931715 0 3683.1781 -5.8148489
6600 20716.445 229.76043 0 3682.5013 -5.4893734
6650 20349.273 291.61535 0 3683.1609 -4.7078762
6700 20397.246 281.10262 0 3680.6437 6.1633541
6750 17336.761 793.781 0 3683.2412 16.830799
6800 21708.663 65.02598 0 3683.1366 -13.06689
6850 20710.866 231.36429 0 3683.1752 1.1238222
6900 20882.087 202.43759 0 3682.7855 -11.177831
6950 21045.002 175.62221 0 3683.1225 -3.9647121
7000 21170.606 154.92601 0 3683.3603 -3.0075479
7050 17340.245 793.0154 0 3683.0563 18.709167
7100 20454.586 274.19282 0 3683.2905 4.359508
7150 19292.634 470.28091 0 3685.72 23.379394
7200 20398.407 283.80225 0 3683.5367 -8.1595888
7250 19860.856 374.83326 0 3684.9759 4.3995323
7300 21399.991 116.79899 0 3683.4642 -14.69253
7350 18469.477 605.76977 0 3684.016 9.072211
7400 21246.811 142.508 0 3683.6431 -2.6286469
7450 21606.727 82.490537 0 3683.6116 -2.193408
7500 20758.001 223.13996 0 3682.8068 3.9337703
7550 21529.182 95.699054 0 3683.896 -2.7652731
7600 20810.859 215.29662 0 3683.7731 -3.4678516
7650 21441.965 109.96162 0 3683.6224 2.8688092
7700 21393.02 117.71951 0 3683.2229 -2.0199004
7750 21261.451 139.46728 0 3683.0424 -2.351181
7800 20994.936 184.15383 0 3683.3099 -1.9007711
7850 20956.664 190.40367 0 3683.1811 -4.9029478
7900 21318.654 129.90109 0 3683.0101 -7.7655435
7950 19343.389 458.65739 0 3682.5556 5.0414528
8000 21252.522 140.54793 0 3682.6349 1.7604951
8050 21323.878 128.7032 0 3682.6829 -0.66125431
8100 20832.414 210.30335 0 3682.3724 -2.6680938
8150 17550.263 757.30848 0 3682.3522 1.416445
8200 20762.307 222.30426 0 3682.6887 7.061507
8250 21016.153 180.1793 0 3682.8714 2.1107236
8300 20995.135 183.00069 0 3682.1899 -10.79355
8350 19663.825 405.47578 0 3682.7799 10.9075
8400 20234.71 310.31036 0 3682.7621 -1.612016
8450 21745.345 58.858829 0 3683.083 -3.880159
8500 20836.685 210.48891 0 3683.2698 2.5161282
8550 18481.486 602.92686 0 3683.1746 4.7767422
8600 20149.663 325.20466 0 3683.4819 1.7540149
8650 20416.882 280.56681 0 3683.3806 -5.3074807
8700 17276.182 803.72341 0 3683.087 3.9552683
8750 21629.427 78.173566 0 3683.0781 -1.1208261
8800 16461.211 941.11509 0 3684.6503 58.708816
8850 20826.403 212.13566 0 3683.2028 -3.6779809
8900 21043.766 176.04074 0 3683.335 3.2840745
8950 18551.011 591.38957 0 3683.2248 -15.766551
9000 17588.62 751.70197 0 3683.1387 -0.79416225
9050 18598.429 582.45011 0 3682.1882 -7.8121328
9100 17574.963 755.1499 0 3684.3105 23.521269
9150 16789.177 884.58607 0 3682.7823 28.62529
9200 21059.662 173.26532 0 3683.209 -6.2449386
9250 21358.259 123.53455 0 3683.2445 -25.726367
9300 20926.413 195.70771 0 3683.4433 -10.230702
9350 20863.621 205.86722 0 3683.1373 -1.4396828
9400 20440.979 275.97483 0 3682.8047 -10.029174
9450 21412.619 114.29156 0 3683.0614 1.8521419
9500 18120.95 662.26385 0 3682.4221 23.552524
9550 19931.385 360.93428 0 3682.8317 1.8081452
9600 19663.03 406.00051 0 3683.1722 11.177455
9650 19534.402 427.35484 0 3683.0885 5.3754448
9700 20291.266 300.91321 0 3682.7908 -14.76683
9750 17786.971 718.21275 0 3682.708 -16.653312
9800 21065.368 171.3061 0 3682.2008 -6.6147323
9850 19611.141 413.59775 0 3682.1213 2.9925904
9900 20735.244 226.23444 0 3682.1084 0.29229058
9950 18050.1 673.94746 0 3682.2975 6.6859551
10000 19913.432 363.4788 0 3682.3842 -5.8860431
Loop time of 33.1043 on 1 procs for 10000 steps with 81 atoms
Pair time (%) = 1.07997 (3.26231)
Neigh time (%) = 0.32972 (0.996002)
Comm time (%) = 0.104371 (0.315279)
Outpt time (%) = 0.145776 (0.440353)
Other time (%) = 31.4445 (94.9861)
Nlocal: 81 ave 81 max 81 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 80 ave 80 max 80 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 857 ave 857 max 857 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 857
Ave neighs/atom = 10.5802
Neighbor list builds = 992
Dangerous builds = 944
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