LAMMPS (30 Apr 2015) # Demonstrate SNAP Ta potential # Initialize simulation variable nsteps index 100 variable nrep equal 4 variable a equal 3.316 units metal # generate the box and atom positions using a BCC lattice variable nx equal ${nrep} variable nx equal 4 variable ny equal ${nrep} variable ny equal 4 variable nz equal ${nrep} variable nz equal 4 boundary p p p lattice bcc $a lattice bcc 3.316 Lattice spacing in x,y,z = 3.316 3.316 3.316 region box block 0 ${nx} 0 ${ny} 0 ${nz} region box block 0 4 0 ${ny} 0 ${nz} region box block 0 4 0 4 0 ${nz} region box block 0 4 0 4 0 4 create_box 1 box Created orthogonal box = (0 0 0) to (13.264 13.264 13.264) 1 by 2 by 2 MPI processor grid create_atoms 1 box Created 128 atoms mass 1 180.88 # choose potential include Ta06A_pot.snap # Definition of SNAP potential Ta_Cand06A # Assumes 1 LAMMPS atom type variable zblcutinner equal 4 variable zblcutouter equal 4.8 variable zblz equal 73 # Specify hybrid with SNAP, ZBL pair_style hybrid/overlay zbl ${zblcutinner} ${zblcutouter} snap pair_style hybrid/overlay zbl 4 ${zblcutouter} snap pair_style hybrid/overlay zbl 4 4.8 snap pair_coeff * * zbl 0.0 # Needed to activate hybrid cross-types pair_coeff 1 1 zbl ${zblz} pair_coeff 1 1 zbl 73 pair_coeff * * snap Ta06A.snapcoeff Ta Ta06A.snapparam Ta SNAP Element = Ta, Radius 0.5, Weight 1 SNAP keyword rcutfac 4.67637 SNAP keyword twojmax 6 SNAP keyword gamma 1 SNAP keyword rfac0 0.99363 SNAP keyword rmin0 0 SNAP keyword diagonalstyle 3 # Setup output thermo 10 thermo_modify norm yes # Set up NVE run timestep 0.5e-3 neighbor 1.0 bin neigh_modify once no every 1 delay 0 check yes # Run MD velocity all create 300.0 4928459 fix 1 all nve run ${nsteps} run 100 Neighbor list info ... 2 neighbor list requests update every 1 steps, delay 0 steps, check yes master list distance cutoff = 5.8 Memory usage per processor = 2.91109 Mbytes Step Temp E_pair E_mol TotEng Press 0 300 -11.85157 0 -11.813095 2717.1661 10 295.8664 -11.85104 0 -11.813095 2702.935 20 283.95868 -11.849513 0 -11.813095 2301.3242 30 265.29535 -11.847119 0 -11.813095 1870.3173 40 241.09337 -11.844015 0 -11.813095 1568.1549 50 212.86732 -11.840395 0 -11.813094 1409.2092 60 182.35256 -11.836481 0 -11.813094 1389.0527 70 151.38968 -11.83251 0 -11.813094 1474.9232 80 121.80051 -11.828715 0 -11.813094 1627.6911 90 95.262635 -11.825311 0 -11.813094 1812.9327 100 73.194645 -11.822481 0 -11.813094 1995.2199 Loop time of 0.888769 on 4 procs for 100 steps with 128 atoms Pair time (%) = 0.87451 (98.3957) Neigh time (%) = 0 (0) Comm time (%) = 0.0132717 (1.49327) Outpt time (%) = 0.000236809 (0.0266446) Other time (%) = 0.000750065 (0.0843937) Nlocal: 32 ave 32 max 32 min Histogram: 4 0 0 0 0 0 0 0 0 0 Nghost: 431 ave 431 max 431 min Histogram: 4 0 0 0 0 0 0 0 0 0 Neighs: 928 ave 928 max 928 min Histogram: 4 0 0 0 0 0 0 0 0 0 FullNghs: 1856 ave 1856 max 1856 min Histogram: 4 0 0 0 0 0 0 0 0 0 Total # of neighbors = 7424 Ave neighs/atom = 58 Neighbor list builds = 0 Dangerous builds = 0