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lal_vashishta.cpp
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lal_vashishta.cpp
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/***************************************************************************
vashishta.cpp
-------------------
Anders Hafreager (UiO)
Class for acceleration of the vashishta pair style.
__________________________________________________________________________
This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
__________________________________________________________________________
begin : Mon June 12, 2017
email : andershaf@gmail.com
***************************************************************************/
#if defined(USE_OPENCL)
#include "vashishta_cl.h"
#elif defined(USE_CUDART)
const char *vashishta=0;
#else
#include "vashishta_cubin.h"
#endif
#include "lal_vashishta.h"
#include <cassert>
using namespace LAMMPS_AL;
#define VashishtaT Vashishta<numtyp, acctyp>
extern Device<PRECISION,ACC_PRECISION> device;
template <class numtyp, class acctyp>
VashishtaT::Vashishta() : BaseThree<numtyp,acctyp>(), _allocated(false) {
}
template <class numtyp, class acctyp>
VashishtaT::~Vashishta() {
clear();
}
template <class numtyp, class acctyp>
int VashishtaT::bytes_per_atom(const int max_nbors) const {
return this->bytes_per_atom_atomic(max_nbors);
}
template <class numtyp, class acctyp>
int VashishtaT::init(const int ntypes, const int nlocal, const int nall, const int max_nbors,
const double cell_size, const double gpu_split, FILE *_screen,
int* host_map, const int nelements, int*** host_elem2param, const int nparams,
const double* cutsq, const double* r0,
const double* gamma, const double* eta,
const double* lam1inv, const double* lam4inv,
const double* zizj, const double* mbigd,
const double* dvrc, const double* big6w,
const double* heta, const double* bigh,
const double* bigw, const double* c0,
const double* costheta, const double* bigb,
const double* big2b, const double* bigc)
{
int success;
success=this->init_three(nlocal,nall,max_nbors,0,cell_size,gpu_split,
_screen,vashishta,"k_vashishta","k_vashishta_three_center",
"k_vashishta_three_end","k_vashishta_short_nbor");
if (success!=0)
return success;
// If atom type constants fit in shared memory use fast kernel
int lj_types=ntypes;
shared_types=false;
int max_shared_types=this->device->max_shared_types();
if (lj_types<=max_shared_types && this->_block_size>=max_shared_types) {
lj_types=max_shared_types;
shared_types=true;
}
_lj_types=lj_types;
_nparams = nparams;
_nelements = nelements;
UCL_H_Vec<numtyp4> dview(nparams,*(this->ucl_device),
UCL_WRITE_ONLY);
for (int i=0; i<nparams; i++) {
dview[i].x=(numtyp)0;
dview[i].y=(numtyp)0;
dview[i].z=(numtyp)0;
dview[i].w=(numtyp)0;
}
// pack coefficients into arrays
param1.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY);
for (int i=0; i<nparams; i++) {
dview[i].x=static_cast<numtyp>(eta[i]);
dview[i].y=static_cast<numtyp>(lam1inv[i]);
dview[i].z=static_cast<numtyp>(lam4inv[i]);
dview[i].w=static_cast<numtyp>(zizj[i]);
}
ucl_copy(param1,dview,false);
param1_tex.get_texture(*(this->pair_program),"param1_tex");
param1_tex.bind_float(param1,4);
param2.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY);
for (int i=0; i<nparams; i++) {
dview[i].x=static_cast<numtyp>(mbigd[i]);
dview[i].y=static_cast<numtyp>(dvrc[i]);
dview[i].z=static_cast<numtyp>(big6w[i]);
dview[i].w=static_cast<numtyp>(heta[i]);
}
ucl_copy(param2,dview,false);
param2_tex.get_texture(*(this->pair_program),"param2_tex");
param2_tex.bind_float(param2,4);
param3.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY);
for (int i=0; i<nparams; i++) {
dview[i].x=static_cast<numtyp>(bigh[i]);
dview[i].y=static_cast<numtyp>(bigw[i]);
dview[i].z=static_cast<numtyp>(dvrc[i]);
dview[i].w=static_cast<numtyp>(c0[i]);
}
ucl_copy(param3,dview,false);
param3_tex.get_texture(*(this->pair_program),"param3_tex");
param3_tex.bind_float(param3,4);
param4.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY);
double r0sqmax = 0;
for (int i=0; i<nparams; i++) {
double r0sq = r0[i]*r0[i]; // TODO: should we have the 1e-4?
if (r0sqmax < r0sq) r0sqmax = r0sq;
dview[i].x=static_cast<numtyp>(r0sq);
dview[i].y=static_cast<numtyp>(gamma[i]);
dview[i].z=static_cast<numtyp>(cutsq[i]);
dview[i].w=static_cast<numtyp>(r0[i]);
}
_cutshortsq = static_cast<numtyp>(r0sqmax);
ucl_copy(param4,dview,false);
param4_tex.get_texture(*(this->pair_program),"param4_tex");
param4_tex.bind_float(param4,4);
param5.alloc(nparams,*(this->ucl_device),UCL_READ_ONLY);
for (int i=0; i<nparams; i++) {
dview[i].x=static_cast<numtyp>(bigc[i]);
dview[i].y=static_cast<numtyp>(costheta[i]);
dview[i].z=static_cast<numtyp>(bigb[i]);
dview[i].w=static_cast<numtyp>(big2b[i]);
}
ucl_copy(param5,dview,false);
param5_tex.get_texture(*(this->pair_program),"param5_tex");
param5_tex.bind_float(param5,4);
UCL_H_Vec<int> dview_elem2param(nelements*nelements*nelements,
*(this->ucl_device), UCL_WRITE_ONLY);
elem2param.alloc(nelements*nelements*nelements,*(this->ucl_device),
UCL_READ_ONLY);
for (int i = 0; i < nelements; i++)
for (int j = 0; j < nelements; j++)
for (int k = 0; k < nelements; k++) {
int idx = i*nelements*nelements+j*nelements+k;
dview_elem2param[idx] = host_elem2param[i][j][k];
}
ucl_copy(elem2param,dview_elem2param,false);
UCL_H_Vec<int> dview_map(lj_types, *(this->ucl_device), UCL_WRITE_ONLY);
for (int i = 0; i < ntypes; i++)
dview_map[i] = host_map[i];
map.alloc(lj_types,*(this->ucl_device), UCL_READ_ONLY);
ucl_copy(map,dview_map,false);
_allocated=true;
this->_max_bytes=param1.row_bytes()+param2.row_bytes()+param3.row_bytes()+param4.row_bytes()+param5.row_bytes()+
map.row_bytes()+elem2param.row_bytes();
return 0;
}
template <class numtyp, class acctyp>
void VashishtaT::clear() {
if (!_allocated)
return;
_allocated=false;
param1.clear();
param2.clear();
param3.clear();
param4.clear();
param5.clear();
map.clear();
elem2param.clear();
this->clear_atomic();
}
template <class numtyp, class acctyp>
double VashishtaT::host_memory_usage() const {
return this->host_memory_usage_atomic()+sizeof(Vashishta<numtyp,acctyp>);
}
#define KTHREADS this->_threads_per_atom
#define JTHREADS this->_threads_per_atom
// ---------------------------------------------------------------------------
// Calculate energies, forces, and torques
// ---------------------------------------------------------------------------
template <class numtyp, class acctyp>
void VashishtaT::loop(const bool _eflag, const bool _vflag, const int evatom) {
// Compute the block size and grid size to keep all cores busy
int BX=this->block_pair();
int eflag, vflag;
if (_eflag)
eflag=1;
else
eflag=0;
if (_vflag)
vflag=1;
else
vflag=0;
// build the short neighbor list
int ainum=this->_ainum;
int nbor_pitch=this->nbor->nbor_pitch();
int GX=static_cast<int>(ceil(static_cast<double>(ainum)/
(BX/this->_threads_per_atom)));
this->k_short_nbor.set_size(GX,BX);
this->k_short_nbor.run(&this->atom->x, &param4, &map,
&elem2param, &_nelements, &_nparams,
&this->nbor->dev_nbor, &this->_nbor_data->begin(),
&this->dev_short_nbor, &ainum,
&nbor_pitch, &this->_threads_per_atom);
// this->_nbor_data == nbor->dev_packed for gpu_nbor == 0 and tpa > 1
// this->_nbor_data == nbor->dev_nbor for gpu_nbor == 1 or tpa == 1
ainum=this->ans->inum();
nbor_pitch=this->nbor->nbor_pitch();
GX=static_cast<int>(ceil(static_cast<double>(this->ans->inum())/
(BX/this->_threads_per_atom)));
this->time_pair.start();
// note that k_pair does not run with the short neighbor list
this->k_pair.set_size(GX,BX);
this->k_pair.run(&this->atom->x, &param1, &param2, &param3, &param4, &param5,
&map, &elem2param, &_nelements,
&this->nbor->dev_nbor, &this->_nbor_data->begin(),
&this->ans->force, &this->ans->engv,
&eflag, &vflag, &ainum, &nbor_pitch,
&this->_threads_per_atom);
BX=this->block_size();
GX=static_cast<int>(ceil(static_cast<double>(this->ans->inum())/
(BX/(KTHREADS*JTHREADS))));
this->k_three_center.set_size(GX,BX);
this->k_three_center.run(&this->atom->x, &param1, &param2, &param3, &param4, &param5,
&map, &elem2param, &_nelements,
&this->nbor->dev_nbor, &this->_nbor_data->begin(),
&this->dev_short_nbor,
&this->ans->force, &this->ans->engv, &eflag, &vflag, &ainum,
&nbor_pitch, &this->_threads_per_atom, &evatom);
Answer<numtyp,acctyp> *end_ans;
#ifdef THREE_CONCURRENT
end_ans=this->ans2;
#else
end_ans=this->ans;
#endif
if (evatom!=0) {
this->k_three_end_vatom.set_size(GX,BX);
this->k_three_end_vatom.run(&this->atom->x, &param1, &param2, &param3, &param4, &param5,
&map, &elem2param, &_nelements,
&this->nbor->dev_nbor, &this->_nbor_data->begin(),
&this->nbor->dev_acc, &this->dev_short_nbor,
&end_ans->force, &end_ans->engv, &eflag, &vflag, &ainum,
&nbor_pitch, &this->_threads_per_atom, &this->_gpu_nbor);
} else {
this->k_three_end.set_size(GX,BX);
this->k_three_end.run(&this->atom->x, &param1, &param2, &param3, &param4, &param5,
&map, &elem2param, &_nelements,
&this->nbor->dev_nbor, &this->_nbor_data->begin(),
&this->nbor->dev_acc, &this->dev_short_nbor,
&end_ans->force, &end_ans->engv, &eflag, &vflag, &ainum,
&nbor_pitch, &this->_threads_per_atom, &this->_gpu_nbor);
}
this->time_pair.stop();
}
template class Vashishta<PRECISION,ACC_PRECISION>;

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