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pair_buck_long_coul_long.cpp
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rLAMMPS lammps
pair_buck_long_coul_long.cpp
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/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
http://lammps.sandia.gov, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
/* ----------------------------------------------------------------------
Contributing author: Pieter J. in 't Veld (SNL)
------------------------------------------------------------------------- */
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include "math_vector.h"
#include "pair_buck_long_coul_long.h"
#include "atom.h"
#include "comm.h"
#include "neighbor.h"
#include "neigh_list.h"
#include "neigh_request.h"
#include "force.h"
#include "kspace.h"
#include "update.h"
#include "integrate.h"
#include "respa.h"
#include "memory.h"
#include "error.h"
using
namespace
LAMMPS_NS
;
#define EWALD_F 1.12837917
#define EWALD_P 0.3275911
#define A1 0.254829592
#define A2 -0.284496736
#define A3 1.421413741
#define A4 -1.453152027
#define A5 1.061405429
/* ---------------------------------------------------------------------- */
PairBuckLongCoulLong
::
PairBuckLongCoulLong
(
LAMMPS
*
lmp
)
:
Pair
(
lmp
)
{
dispersionflag
=
ewaldflag
=
pppmflag
=
1
;
respa_enable
=
1
;
writedata
=
1
;
ftable
=
NULL
;
fdisptable
=
NULL
;
}
/* ----------------------------------------------------------------------
global settings
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
options
(
char
**
arg
,
int
order
)
{
const
char
*
option
[]
=
{
"long"
,
"cut"
,
"off"
,
NULL
};
int
i
;
if
(
!*
arg
)
error
->
all
(
FLERR
,
"Illegal pair_style buck/long/coul/long command"
);
for
(
i
=
0
;
option
[
i
]
&&
strcmp
(
arg
[
0
],
option
[
i
]);
++
i
);
switch
(
i
)
{
default
:
error
->
all
(
FLERR
,
"Illegal pair_style buck/long/coul/long command"
);
case
0
:
ewald_order
|=
1
<<
order
;
break
;
case
2
:
ewald_off
|=
1
<<
order
;
case
1
:
break
;
}
}
/* ---------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
settings
(
int
narg
,
char
**
arg
)
{
if
(
narg
!=
3
&&
narg
!=
4
)
error
->
all
(
FLERR
,
"Illegal pair_style command"
);
ewald_order
=
0
;
ewald_off
=
0
;
options
(
arg
,
6
);
options
(
++
arg
,
1
);
if
(
!
comm
->
me
&&
ewald_order
==
((
1
<<
1
)
|
(
1
<<
6
)))
error
->
warning
(
FLERR
,
"Using largest cutoff for buck/long/coul/long"
);
if
(
!*
(
++
arg
))
error
->
all
(
FLERR
,
"Cutoffs missing in pair_style buck/long/coul/long"
);
if
(
ewald_off
&
(
1
<<
6
))
error
->
all
(
FLERR
,
"LJ6 off not supported in pair_style buck/long/coul/long"
);
if
(
!
((
ewald_order
^
ewald_off
)
&
(
1
<<
1
)))
error
->
all
(
FLERR
,
"Coulomb cut not supported in pair_style buck/long/coul/coul"
);
cut_buck_global
=
force
->
numeric
(
FLERR
,
*
(
arg
++
));
if
(
narg
==
4
&&
((
ewald_order
&
0x42
)
==
0x42
))
error
->
all
(
FLERR
,
"Only one cutoff allowed when requesting all long"
);
if
(
narg
==
4
)
cut_coul
=
force
->
numeric
(
FLERR
,
*
arg
);
else
cut_coul
=
cut_buck_global
;
if
(
allocated
)
{
int
i
,
j
;
for
(
i
=
1
;
i
<=
atom
->
ntypes
;
i
++
)
for
(
j
=
i
;
j
<=
atom
->
ntypes
;
j
++
)
if
(
setflag
[
i
][
j
])
cut_buck
[
i
][
j
]
=
cut_buck_global
;
}
}
/* ----------------------------------------------------------------------
free all arrays
------------------------------------------------------------------------- */
PairBuckLongCoulLong
::~
PairBuckLongCoulLong
()
{
if
(
allocated
)
{
memory
->
destroy
(
setflag
);
memory
->
destroy
(
cutsq
);
memory
->
destroy
(
cut_buck_read
);
memory
->
destroy
(
cut_buck
);
memory
->
destroy
(
cut_bucksq
);
memory
->
destroy
(
buck_a_read
);
memory
->
destroy
(
buck_a
);
memory
->
destroy
(
buck_c_read
);
memory
->
destroy
(
buck_c
);
memory
->
destroy
(
buck_rho_read
);
memory
->
destroy
(
buck_rho
);
memory
->
destroy
(
buck1
);
memory
->
destroy
(
buck2
);
memory
->
destroy
(
rhoinv
);
memory
->
destroy
(
offset
);
}
if
(
ftable
)
free_tables
();
if
(
fdisptable
)
free_disp_tables
();
}
/* ----------------------------------------------------------------------
allocate all arrays
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
allocate
()
{
allocated
=
1
;
int
n
=
atom
->
ntypes
;
memory
->
create
(
setflag
,
n
+
1
,
n
+
1
,
"pair:setflag"
);
for
(
int
i
=
1
;
i
<=
n
;
i
++
)
for
(
int
j
=
i
;
j
<=
n
;
j
++
)
setflag
[
i
][
j
]
=
0
;
memory
->
create
(
cutsq
,
n
+
1
,
n
+
1
,
"pair:cutsq"
);
memory
->
create
(
cut_buck_read
,
n
+
1
,
n
+
1
,
"pair:cut_buck_read"
);
memory
->
create
(
cut_buck
,
n
+
1
,
n
+
1
,
"pair:cut_buck"
);
memory
->
create
(
cut_bucksq
,
n
+
1
,
n
+
1
,
"pair:cut_bucksq"
);
memory
->
create
(
buck_a_read
,
n
+
1
,
n
+
1
,
"pair:buck_a_read"
);
memory
->
create
(
buck_a
,
n
+
1
,
n
+
1
,
"pair:buck_a"
);
memory
->
create
(
buck_c_read
,
n
+
1
,
n
+
1
,
"pair:buck_c_read"
);
memory
->
create
(
buck_c
,
n
+
1
,
n
+
1
,
"pair:buck_c"
);
memory
->
create
(
buck_rho_read
,
n
+
1
,
n
+
1
,
"pair:buck_rho_read"
);
memory
->
create
(
buck_rho
,
n
+
1
,
n
+
1
,
"pair:buck_rho"
);
memory
->
create
(
buck1
,
n
+
1
,
n
+
1
,
"pair:buck1"
);
memory
->
create
(
buck2
,
n
+
1
,
n
+
1
,
"pair:buck2"
);
memory
->
create
(
rhoinv
,
n
+
1
,
n
+
1
,
"pair:rhoinv"
);
memory
->
create
(
offset
,
n
+
1
,
n
+
1
,
"pair:offset"
);
}
/* ----------------------------------------------------------------------
extract protected data from object
------------------------------------------------------------------------- */
void
*
PairBuckLongCoulLong
::
extract
(
const
char
*
id
,
int
&
dim
)
{
const
char
*
ids
[]
=
{
"B"
,
"ewald_order"
,
"ewald_cut"
,
"ewald_mix"
,
"cut_coul"
,
"cut_LJ"
,
NULL
};
void
*
ptrs
[]
=
{
buck_c
,
&
ewald_order
,
&
cut_coul
,
&
mix_flag
,
&
cut_coul
,
&
cut_buck_global
,
NULL
};
int
i
;
for
(
i
=
0
;
ids
[
i
]
&&
strcmp
(
ids
[
i
],
id
);
++
i
);
if
(
i
==
0
)
dim
=
2
;
else
dim
=
0
;
return
ptrs
[
i
];
}
/* ----------------------------------------------------------------------
set coeffs for one or more type pairs
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
coeff
(
int
narg
,
char
**
arg
)
{
if
(
narg
<
5
||
narg
>
6
)
error
->
all
(
FLERR
,
"Incorrect args for pair coefficients"
);
if
(
!
allocated
)
allocate
();
int
ilo
,
ihi
,
jlo
,
jhi
;
force
->
bounds
(
FLERR
,
*
(
arg
++
),
atom
->
ntypes
,
ilo
,
ihi
);
force
->
bounds
(
FLERR
,
*
(
arg
++
),
atom
->
ntypes
,
jlo
,
jhi
);
double
buck_a_one
=
force
->
numeric
(
FLERR
,
*
(
arg
++
));
double
buck_rho_one
=
force
->
numeric
(
FLERR
,
*
(
arg
++
));
double
buck_c_one
=
force
->
numeric
(
FLERR
,
*
(
arg
++
));
double
cut_buck_one
=
cut_buck_global
;
if
(
narg
==
6
)
cut_buck_one
=
force
->
numeric
(
FLERR
,
*
(
arg
++
));
int
count
=
0
;
for
(
int
i
=
ilo
;
i
<=
ihi
;
i
++
)
{
for
(
int
j
=
MAX
(
jlo
,
i
);
j
<=
jhi
;
j
++
)
{
buck_a_read
[
i
][
j
]
=
buck_a_one
;
buck_c_read
[
i
][
j
]
=
buck_c_one
;
buck_rho_read
[
i
][
j
]
=
buck_rho_one
;
cut_buck_read
[
i
][
j
]
=
cut_buck_one
;
setflag
[
i
][
j
]
=
1
;
count
++
;
}
}
if
(
count
==
0
)
error
->
all
(
FLERR
,
"Incorrect args for pair coefficients"
);
}
/* ----------------------------------------------------------------------
init specific to this pair style
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
init_style
()
{
// require an atom style with charge defined
if
(
!
atom
->
q_flag
&&
(
ewald_order
&
(
1
<<
1
)))
error
->
all
(
FLERR
,
"Invoking coulombic in pair style buck/long/coul/long "
"requires atom attribute q"
);
// ensure use of KSpace long-range solver, set two g_ewalds
if
(
force
->
kspace
==
NULL
)
error
->
all
(
FLERR
,
"Pair style requires a KSpace style"
);
if
(
ewald_order
&
(
1
<<
1
))
g_ewald
=
force
->
kspace
->
g_ewald
;
if
(
ewald_order
&
(
1
<<
6
))
g_ewald_6
=
force
->
kspace
->
g_ewald_6
;
// set rRESPA cutoffs
if
(
strstr
(
update
->
integrate_style
,
"respa"
)
&&
((
Respa
*
)
update
->
integrate
)
->
level_inner
>=
0
)
cut_respa
=
((
Respa
*
)
update
->
integrate
)
->
cutoff
;
else
cut_respa
=
NULL
;
// setup force tables
if
(
ncoultablebits
&&
(
ewald_order
&
(
1
<<
1
)))
init_tables
(
cut_coul
,
cut_respa
);
if
(
ndisptablebits
&&
(
ewald_order
&
(
1
<<
6
)))
init_tables_disp
(
cut_buck_global
);
// request regular or rRESPA neighbor lists if neighrequest_flag != 0
if
(
force
->
kspace
->
neighrequest_flag
)
{
int
irequest
;
int
respa
=
0
;
if
(
update
->
whichflag
==
1
&&
strstr
(
update
->
integrate_style
,
"respa"
))
{
if
(((
Respa
*
)
update
->
integrate
)
->
level_inner
>=
0
)
respa
=
1
;
if
(((
Respa
*
)
update
->
integrate
)
->
level_middle
>=
0
)
respa
=
2
;
}
irequest
=
neighbor
->
request
(
this
,
instance_me
);
if
(
respa
>=
1
)
{
neighbor
->
requests
[
irequest
]
->
respaouter
=
1
;
neighbor
->
requests
[
irequest
]
->
respainner
=
1
;
}
if
(
respa
==
2
)
neighbor
->
requests
[
irequest
]
->
respamiddle
=
1
;
}
cut_coulsq
=
cut_coul
*
cut_coul
;
}
/* ----------------------------------------------------------------------
init for one type pair i,j and corresponding j,i
------------------------------------------------------------------------- */
double
PairBuckLongCoulLong
::
init_one
(
int
i
,
int
j
)
{
if
(
setflag
[
i
][
j
]
==
0
)
error
->
all
(
FLERR
,
"All pair coeffs are not set"
);
if
(
ewald_order
&
(
1
<<
6
))
cut_buck
[
i
][
j
]
=
cut_buck_global
;
else
cut_buck
[
i
][
j
]
=
cut_buck_read
[
i
][
j
];
buck_a
[
i
][
j
]
=
buck_a_read
[
i
][
j
];
buck_c
[
i
][
j
]
=
buck_c_read
[
i
][
j
];
buck_rho
[
i
][
j
]
=
buck_rho_read
[
i
][
j
];
double
cut
=
MAX
(
cut_buck
[
i
][
j
],
cut_coul
);
cutsq
[
i
][
j
]
=
cut
*
cut
;
cut_bucksq
[
i
][
j
]
=
cut_buck
[
i
][
j
]
*
cut_buck
[
i
][
j
];
buck1
[
i
][
j
]
=
buck_a
[
i
][
j
]
/
buck_rho
[
i
][
j
];
buck2
[
i
][
j
]
=
6.0
*
buck_c
[
i
][
j
];
rhoinv
[
i
][
j
]
=
1.0
/
buck_rho
[
i
][
j
];
// check interior rRESPA cutoff
if
(
cut_respa
&&
MIN
(
cut_buck
[
i
][
j
],
cut_coul
)
<
cut_respa
[
3
])
error
->
all
(
FLERR
,
"Pair cutoff < Respa interior cutoff"
);
if
(
offset_flag
&&
(
cut_buck
[
i
][
j
]
>
0.0
))
{
double
rexp
=
exp
(
-
cut_buck
[
i
][
j
]
/
buck_rho
[
i
][
j
]);
offset
[
i
][
j
]
=
buck_a
[
i
][
j
]
*
rexp
-
buck_c
[
i
][
j
]
/
pow
(
cut_buck
[
i
][
j
],
6.0
);
}
else
offset
[
i
][
j
]
=
0.0
;
cutsq
[
j
][
i
]
=
cutsq
[
i
][
j
];
cut_bucksq
[
j
][
i
]
=
cut_bucksq
[
i
][
j
];
buck_a
[
j
][
i
]
=
buck_a
[
i
][
j
];
buck_c
[
j
][
i
]
=
buck_c
[
i
][
j
];
rhoinv
[
j
][
i
]
=
rhoinv
[
i
][
j
];
buck1
[
j
][
i
]
=
buck1
[
i
][
j
];
buck2
[
j
][
i
]
=
buck2
[
i
][
j
];
offset
[
j
][
i
]
=
offset
[
i
][
j
];
return
cut
;
}
/* ----------------------------------------------------------------------
proc 0 writes to restart file
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
write_restart
(
FILE
*
fp
)
{
write_restart_settings
(
fp
);
int
i
,
j
;
for
(
i
=
1
;
i
<=
atom
->
ntypes
;
i
++
)
for
(
j
=
i
;
j
<=
atom
->
ntypes
;
j
++
)
{
fwrite
(
&
setflag
[
i
][
j
],
sizeof
(
int
),
1
,
fp
);
if
(
setflag
[
i
][
j
])
{
fwrite
(
&
buck_a_read
[
i
][
j
],
sizeof
(
double
),
1
,
fp
);
fwrite
(
&
buck_rho_read
[
i
][
j
],
sizeof
(
double
),
1
,
fp
);
fwrite
(
&
buck_c_read
[
i
][
j
],
sizeof
(
double
),
1
,
fp
);
fwrite
(
&
cut_buck_read
[
i
][
j
],
sizeof
(
double
),
1
,
fp
);
}
}
}
/* ----------------------------------------------------------------------
proc 0 reads from restart file, bcasts
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
read_restart
(
FILE
*
fp
)
{
read_restart_settings
(
fp
);
allocate
();
int
i
,
j
;
int
me
=
comm
->
me
;
for
(
i
=
1
;
i
<=
atom
->
ntypes
;
i
++
)
for
(
j
=
i
;
j
<=
atom
->
ntypes
;
j
++
)
{
if
(
me
==
0
)
fread
(
&
setflag
[
i
][
j
],
sizeof
(
int
),
1
,
fp
);
MPI_Bcast
(
&
setflag
[
i
][
j
],
1
,
MPI_INT
,
0
,
world
);
if
(
setflag
[
i
][
j
])
{
if
(
me
==
0
)
{
fread
(
&
buck_a_read
[
i
][
j
],
sizeof
(
double
),
1
,
fp
);
fread
(
&
buck_rho_read
[
i
][
j
],
sizeof
(
double
),
1
,
fp
);
fread
(
&
buck_c_read
[
i
][
j
],
sizeof
(
double
),
1
,
fp
);
fread
(
&
cut_buck_read
[
i
][
j
],
sizeof
(
double
),
1
,
fp
);
}
MPI_Bcast
(
&
buck_a_read
[
i
][
j
],
1
,
MPI_DOUBLE
,
0
,
world
);
MPI_Bcast
(
&
buck_rho_read
[
i
][
j
],
1
,
MPI_DOUBLE
,
0
,
world
);
MPI_Bcast
(
&
buck_c_read
[
i
][
j
],
1
,
MPI_DOUBLE
,
0
,
world
);
MPI_Bcast
(
&
cut_buck_read
[
i
][
j
],
1
,
MPI_DOUBLE
,
0
,
world
);
}
}
}
/* ----------------------------------------------------------------------
proc 0 writes to restart file
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
write_restart_settings
(
FILE
*
fp
)
{
fwrite
(
&
cut_buck_global
,
sizeof
(
double
),
1
,
fp
);
fwrite
(
&
cut_coul
,
sizeof
(
double
),
1
,
fp
);
fwrite
(
&
offset_flag
,
sizeof
(
int
),
1
,
fp
);
fwrite
(
&
mix_flag
,
sizeof
(
int
),
1
,
fp
);
fwrite
(
&
ncoultablebits
,
sizeof
(
int
),
1
,
fp
);
fwrite
(
&
tabinner
,
sizeof
(
double
),
1
,
fp
);
fwrite
(
&
ewald_order
,
sizeof
(
int
),
1
,
fp
);
}
/* ----------------------------------------------------------------------
proc 0 reads from restart file, bcasts
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
read_restart_settings
(
FILE
*
fp
)
{
if
(
comm
->
me
==
0
)
{
fread
(
&
cut_buck_global
,
sizeof
(
double
),
1
,
fp
);
fread
(
&
cut_coul
,
sizeof
(
double
),
1
,
fp
);
fread
(
&
offset_flag
,
sizeof
(
int
),
1
,
fp
);
fread
(
&
mix_flag
,
sizeof
(
int
),
1
,
fp
);
fread
(
&
ncoultablebits
,
sizeof
(
int
),
1
,
fp
);
fread
(
&
tabinner
,
sizeof
(
double
),
1
,
fp
);
fread
(
&
ewald_order
,
sizeof
(
int
),
1
,
fp
);
}
MPI_Bcast
(
&
cut_buck_global
,
1
,
MPI_DOUBLE
,
0
,
world
);
MPI_Bcast
(
&
cut_coul
,
1
,
MPI_DOUBLE
,
0
,
world
);
MPI_Bcast
(
&
offset_flag
,
1
,
MPI_INT
,
0
,
world
);
MPI_Bcast
(
&
mix_flag
,
1
,
MPI_INT
,
0
,
world
);
MPI_Bcast
(
&
ncoultablebits
,
1
,
MPI_INT
,
0
,
world
);
MPI_Bcast
(
&
tabinner
,
1
,
MPI_DOUBLE
,
0
,
world
);
MPI_Bcast
(
&
ewald_order
,
1
,
MPI_INT
,
0
,
world
);
}
/* ----------------------------------------------------------------------
proc 0 writes to data file
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
write_data
(
FILE
*
fp
)
{
for
(
int
i
=
1
;
i
<=
atom
->
ntypes
;
i
++
)
fprintf
(
fp
,
"%d %g %g %g
\n
"
,
i
,
buck_a_read
[
i
][
i
],
buck_rho_read
[
i
][
i
],
buck_c_read
[
i
][
i
]);
}
/* ----------------------------------------------------------------------
proc 0 writes all pairs to data file
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
write_data_all
(
FILE
*
fp
)
{
for
(
int
i
=
1
;
i
<=
atom
->
ntypes
;
i
++
)
for
(
int
j
=
i
;
j
<=
atom
->
ntypes
;
j
++
)
fprintf
(
fp
,
"%d %d %g %g %g
\n
"
,
i
,
j
,
buck_a_read
[
i
][
j
],
buck_rho_read
[
i
][
j
],
buck_c_read
[
i
][
j
]);
}
/* ----------------------------------------------------------------------
compute pair interactions
------------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
compute
(
int
eflag
,
int
vflag
)
{
double
evdwl
,
ecoul
,
fpair
;
evdwl
=
ecoul
=
0.0
;
if
(
eflag
||
vflag
)
ev_setup
(
eflag
,
vflag
);
else
evflag
=
vflag_fdotr
=
0
;
double
**
x
=
atom
->
x
,
*
x0
=
x
[
0
];
double
**
f
=
atom
->
f
,
*
f0
=
f
[
0
],
*
fi
=
f0
;
double
*
q
=
atom
->
q
;
int
*
type
=
atom
->
type
;
int
nlocal
=
atom
->
nlocal
;
double
*
special_coul
=
force
->
special_coul
;
double
*
special_lj
=
force
->
special_lj
;
int
newton_pair
=
force
->
newton_pair
;
double
qqrd2e
=
force
->
qqrd2e
;
int
i
,
j
,
order1
=
ewald_order
&
(
1
<<
1
),
order6
=
ewald_order
&
(
1
<<
6
);
int
*
ineigh
,
*
ineighn
,
*
jneigh
,
*
jneighn
,
typei
,
typej
,
ni
;
double
qi
=
0.0
,
qri
=
0.0
,
*
cutsqi
,
*
cut_bucksqi
,
*
buck1i
,
*
buck2i
,
*
buckai
,
*
buckci
,
*
rhoinvi
,
*
offseti
;
double
r
,
rsq
,
r2inv
,
force_coul
,
force_buck
;
double
g2
=
g_ewald_6
*
g_ewald_6
,
g6
=
g2
*
g2
*
g2
,
g8
=
g6
*
g2
;
vector
xi
,
d
;
ineighn
=
(
ineigh
=
list
->
ilist
)
+
list
->
inum
;
for
(;
ineigh
<
ineighn
;
++
ineigh
)
{
// loop over my atoms
i
=
*
ineigh
;
fi
=
f0
+
3
*
i
;
if
(
order1
)
qri
=
(
qi
=
q
[
i
])
*
qqrd2e
;
// initialize constants
offseti
=
offset
[
typei
=
type
[
i
]];
buck1i
=
buck1
[
typei
];
buck2i
=
buck2
[
typei
];
buckai
=
buck_a
[
typei
];
buckci
=
buck_c
[
typei
],
rhoinvi
=
rhoinv
[
typei
];
cutsqi
=
cutsq
[
typei
];
cut_bucksqi
=
cut_bucksq
[
typei
];
memcpy
(
xi
,
x0
+
(
i
+
(
i
<<
1
)),
sizeof
(
vector
));
jneighn
=
(
jneigh
=
list
->
firstneigh
[
i
])
+
list
->
numneigh
[
i
];
for
(;
jneigh
<
jneighn
;
++
jneigh
)
{
// loop over neighbors
j
=
*
jneigh
;
ni
=
sbmask
(
j
);
j
&=
NEIGHMASK
;
{
register
double
*
xj
=
x0
+
(
j
+
(
j
<<
1
));
d
[
0
]
=
xi
[
0
]
-
xj
[
0
];
// pair vector
d
[
1
]
=
xi
[
1
]
-
xj
[
1
];
d
[
2
]
=
xi
[
2
]
-
xj
[
2
];
}
if
((
rsq
=
vec_dot
(
d
,
d
))
>=
cutsqi
[
typej
=
type
[
j
]])
continue
;
r2inv
=
1.0
/
rsq
;
r
=
sqrt
(
rsq
);
if
(
order1
&&
(
rsq
<
cut_coulsq
))
{
// coulombic
if
(
!
ncoultablebits
||
rsq
<=
tabinnersq
)
{
// series real space
register
double
x
=
g_ewald
*
r
;
register
double
s
=
qri
*
q
[
j
],
t
=
1.0
/
(
1.0
+
EWALD_P
*
x
);
if
(
ni
==
0
)
{
s
*=
g_ewald
*
exp
(
-
x
*
x
);
force_coul
=
(
t
*=
((((
t
*
A5
+
A4
)
*
t
+
A3
)
*
t
+
A2
)
*
t
+
A1
)
*
s
/
x
)
+
EWALD_F
*
s
;
if
(
eflag
)
ecoul
=
t
;
}
else
{
// special case
register
double
f
=
s
*
(
1.0
-
special_coul
[
ni
])
/
r
;
s
*=
g_ewald
*
exp
(
-
x
*
x
);
force_coul
=
(
t
*=
((((
t
*
A5
+
A4
)
*
t
+
A3
)
*
t
+
A2
)
*
t
+
A1
)
*
s
/
x
)
+
EWALD_F
*
s
-
f
;
if
(
eflag
)
ecoul
=
t
-
f
;
}
}
// table real space
else
{
register
union_int_float_t
t
;
t
.
f
=
rsq
;
register
const
int
k
=
(
t
.
i
&
ncoulmask
)
>>
ncoulshiftbits
;
register
double
f
=
(
rsq
-
rtable
[
k
])
*
drtable
[
k
],
qiqj
=
qi
*
q
[
j
];
if
(
ni
==
0
)
{
force_coul
=
qiqj
*
(
ftable
[
k
]
+
f
*
dftable
[
k
]);
if
(
eflag
)
ecoul
=
qiqj
*
(
etable
[
k
]
+
f
*
detable
[
k
]);
}
else
{
// special case
t
.
f
=
(
1.0
-
special_coul
[
ni
])
*
(
ctable
[
k
]
+
f
*
dctable
[
k
]);
force_coul
=
qiqj
*
(
ftable
[
k
]
+
f
*
dftable
[
k
]
-
t
.
f
);
if
(
eflag
)
ecoul
=
qiqj
*
(
etable
[
k
]
+
f
*
detable
[
k
]
-
t
.
f
);
}
}
}
else
force_coul
=
ecoul
=
0.0
;
if
(
rsq
<
cut_bucksqi
[
typej
])
{
// buckingham
register
double
rn
=
r2inv
*
r2inv
*
r2inv
,
expr
=
exp
(
-
r
*
rhoinvi
[
typej
]);
if
(
order6
)
{
// long-range
if
(
!
ndisptablebits
||
rsq
<=
tabinnerdispsq
)
{
register
double
x2
=
g2
*
rsq
,
a2
=
1.0
/
x2
;
x2
=
a2
*
exp
(
-
x2
)
*
buckci
[
typej
];
if
(
ni
==
0
)
{
force_buck
=
r
*
expr
*
buck1i
[
typej
]
-
g8
*
(((
6.0
*
a2
+
6.0
)
*
a2
+
3.0
)
*
a2
+
1.0
)
*
x2
*
rsq
;
if
(
eflag
)
evdwl
=
expr
*
buckai
[
typej
]
-
g6
*
((
a2
+
1.0
)
*
a2
+
0.5
)
*
x2
;
}
else
{
// special case
register
double
f
=
special_lj
[
ni
],
t
=
rn
*
(
1.0
-
f
);
force_buck
=
f
*
r
*
expr
*
buck1i
[
typej
]
-
g8
*
(((
6.0
*
a2
+
6.0
)
*
a2
+
3.0
)
*
a2
+
1.0
)
*
x2
*
rsq
+
t
*
buck2i
[
typej
];
if
(
eflag
)
evdwl
=
f
*
expr
*
buckai
[
typej
]
-
g6
*
((
a2
+
1.0
)
*
a2
+
0.5
)
*
x2
+
t
*
buckci
[
typej
];
}
}
else
{
//table real space
register
union_int_float_t
disp_t
;
disp_t
.
f
=
rsq
;
register
const
int
disp_k
=
(
disp_t
.
i
&
ndispmask
)
>>
ndispshiftbits
;
register
double
f_disp
=
(
rsq
-
rdisptable
[
disp_k
])
*
drdisptable
[
disp_k
];
if
(
ni
==
0
)
{
force_buck
=
r
*
expr
*
buck1i
[
typej
]
-
(
fdisptable
[
disp_k
]
+
f_disp
*
dfdisptable
[
disp_k
])
*
buckci
[
typej
];
if
(
eflag
)
evdwl
=
expr
*
buckai
[
typej
]
-
(
edisptable
[
disp_k
]
+
f_disp
*
dedisptable
[
disp_k
])
*
buckci
[
typej
];
}
else
{
//speial case
register
double
f
=
special_lj
[
ni
],
t
=
rn
*
(
1.0
-
f
);
force_buck
=
f
*
r
*
expr
*
buck1i
[
typej
]
-
(
fdisptable
[
disp_k
]
+
f_disp
*
dfdisptable
[
disp_k
])
*
buckci
[
typej
]
+
t
*
buck2i
[
typej
];
if
(
eflag
)
evdwl
=
f
*
expr
*
buckai
[
typej
]
-
(
edisptable
[
disp_k
]
+
f_disp
*
dedisptable
[
disp_k
])
*
buckci
[
typej
]
+
t
*
buckci
[
typej
];
}
}
}
else
{
// cut
if
(
ni
==
0
)
{
force_buck
=
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
];
if
(
eflag
)
evdwl
=
expr
*
buckai
[
typej
]
-
rn
*
buckci
[
typej
]
-
offseti
[
typej
];
}
else
{
// special case
register
double
f
=
special_lj
[
ni
];
force_buck
=
f
*
(
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
]);
if
(
eflag
)
evdwl
=
f
*
(
expr
*
buckai
[
typej
]
-
rn
*
buckci
[
typej
]
-
offseti
[
typej
]);
}
}
}
else
force_buck
=
evdwl
=
0.0
;
fpair
=
(
force_coul
+
force_buck
)
*
r2inv
;
if
(
newton_pair
||
j
<
nlocal
)
{
register
double
*
fj
=
f0
+
(
j
+
(
j
<<
1
)),
f
;
fi
[
0
]
+=
f
=
d
[
0
]
*
fpair
;
fj
[
0
]
-=
f
;
fi
[
1
]
+=
f
=
d
[
1
]
*
fpair
;
fj
[
1
]
-=
f
;
fi
[
2
]
+=
f
=
d
[
2
]
*
fpair
;
fj
[
2
]
-=
f
;
}
else
{
fi
[
0
]
+=
d
[
0
]
*
fpair
;
fi
[
1
]
+=
d
[
1
]
*
fpair
;
fi
[
2
]
+=
d
[
2
]
*
fpair
;
}
if
(
evflag
)
ev_tally
(
i
,
j
,
nlocal
,
newton_pair
,
evdwl
,
ecoul
,
fpair
,
d
[
0
],
d
[
1
],
d
[
2
]);
}
}
if
(
vflag_fdotr
)
virial_fdotr_compute
();
}
/* ---------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
compute_inner
()
{
double
r
,
rsq
,
r2inv
,
force_coul
=
0.0
,
force_buck
,
fpair
;
int
*
type
=
atom
->
type
;
int
nlocal
=
atom
->
nlocal
;
double
*
x0
=
atom
->
x
[
0
],
*
f0
=
atom
->
f
[
0
],
*
fi
=
f0
,
*
q
=
atom
->
q
;
double
*
special_coul
=
force
->
special_coul
;
double
*
special_lj
=
force
->
special_lj
;
int
newton_pair
=
force
->
newton_pair
;
double
qqrd2e
=
force
->
qqrd2e
;
double
cut_out_on
=
cut_respa
[
0
];
double
cut_out_off
=
cut_respa
[
1
];
double
cut_out_diff
=
cut_out_off
-
cut_out_on
;
double
cut_out_on_sq
=
cut_out_on
*
cut_out_on
;
double
cut_out_off_sq
=
cut_out_off
*
cut_out_off
;
int
*
ineigh
,
*
ineighn
,
*
jneigh
,
*
jneighn
,
typei
,
typej
,
ni
;
int
i
,
j
,
order1
=
(
ewald_order
|
(
ewald_off
^-
1
))
&
(
1
<<
1
);
double
qri
,
*
cut_bucksqi
,
*
buck1i
,
*
buck2i
,
*
rhoinvi
;
vector
xi
,
d
;
ineighn
=
(
ineigh
=
list
->
ilist_inner
)
+
list
->
inum_inner
;
for
(;
ineigh
<
ineighn
;
++
ineigh
)
{
// loop over my atoms
i
=
*
ineigh
;
fi
=
f0
+
3
*
i
;
if
(
order1
)
qri
=
qqrd2e
*
q
[
i
];
memcpy
(
xi
,
x0
+
(
i
+
(
i
<<
1
)),
sizeof
(
vector
));
cut_bucksqi
=
cut_bucksq
[
typei
=
type
[
i
]];
buck1i
=
buck1
[
typei
];
buck2i
=
buck2
[
typei
];
rhoinvi
=
rhoinv
[
typei
];
jneighn
=
(
jneigh
=
list
->
firstneigh_inner
[
i
])
+
list
->
numneigh_inner
[
i
];
for
(;
jneigh
<
jneighn
;
++
jneigh
)
{
// loop over neighbors
j
=
*
jneigh
;
ni
=
sbmask
(
j
);
j
&=
NEIGHMASK
;
{
register
double
*
xj
=
x0
+
(
j
+
(
j
<<
1
));
d
[
0
]
=
xi
[
0
]
-
xj
[
0
];
// pair vector
d
[
1
]
=
xi
[
1
]
-
xj
[
1
];
d
[
2
]
=
xi
[
2
]
-
xj
[
2
];
}
if
((
rsq
=
vec_dot
(
d
,
d
))
>=
cut_out_off_sq
)
continue
;
r2inv
=
1.0
/
rsq
;
r
=
sqrt
(
rsq
);
if
(
order1
&&
(
rsq
<
cut_coulsq
))
// coulombic
force_coul
=
ni
==
0
?
qri
*
q
[
j
]
/
r
:
qri
*
q
[
j
]
/
r
*
special_coul
[
ni
];
if
(
rsq
<
cut_bucksqi
[
typej
=
type
[
j
]])
{
// buckingham
register
double
rn
=
r2inv
*
r2inv
*
r2inv
,
expr
=
exp
(
-
r
*
rhoinvi
[
typej
]);
force_buck
=
ni
==
0
?
(
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
])
:
(
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
])
*
special_lj
[
ni
];
}
else
force_buck
=
0.0
;
fpair
=
(
force_coul
+
force_buck
)
*
r2inv
;
if
(
rsq
>
cut_out_on_sq
)
{
// switching
register
double
rsw
=
(
sqrt
(
rsq
)
-
cut_out_on
)
/
cut_out_diff
;
fpair
*=
1.0
+
rsw
*
rsw
*
(
2.0
*
rsw
-
3.0
);
}
if
(
newton_pair
||
j
<
nlocal
)
{
// force update
register
double
*
fj
=
f0
+
(
j
+
(
j
<<
1
)),
f
;
fi
[
0
]
+=
f
=
d
[
0
]
*
fpair
;
fj
[
0
]
-=
f
;
fi
[
1
]
+=
f
=
d
[
1
]
*
fpair
;
fj
[
1
]
-=
f
;
fi
[
2
]
+=
f
=
d
[
2
]
*
fpair
;
fj
[
2
]
-=
f
;
}
else
{
fi
[
0
]
+=
d
[
0
]
*
fpair
;
fi
[
1
]
+=
d
[
1
]
*
fpair
;
fi
[
2
]
+=
d
[
2
]
*
fpair
;
}
}
}
}
/* ---------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
compute_middle
()
{
double
r
,
rsq
,
r2inv
,
force_coul
=
0.0
,
force_buck
,
fpair
;
int
*
type
=
atom
->
type
;
int
nlocal
=
atom
->
nlocal
;
double
*
x0
=
atom
->
x
[
0
],
*
f0
=
atom
->
f
[
0
],
*
fi
=
f0
,
*
q
=
atom
->
q
;
double
*
special_coul
=
force
->
special_coul
;
double
*
special_lj
=
force
->
special_lj
;
int
newton_pair
=
force
->
newton_pair
;
double
qqrd2e
=
force
->
qqrd2e
;
double
cut_in_off
=
cut_respa
[
0
];
double
cut_in_on
=
cut_respa
[
1
];
double
cut_out_on
=
cut_respa
[
2
];
double
cut_out_off
=
cut_respa
[
3
];
double
cut_in_diff
=
cut_in_on
-
cut_in_off
;
double
cut_out_diff
=
cut_out_off
-
cut_out_on
;
double
cut_in_off_sq
=
cut_in_off
*
cut_in_off
;
double
cut_in_on_sq
=
cut_in_on
*
cut_in_on
;
double
cut_out_on_sq
=
cut_out_on
*
cut_out_on
;
double
cut_out_off_sq
=
cut_out_off
*
cut_out_off
;
int
*
ineigh
,
*
ineighn
,
*
jneigh
,
*
jneighn
,
typei
,
typej
,
ni
;
int
i
,
j
,
order1
=
(
ewald_order
|
(
ewald_off
^-
1
))
&
(
1
<<
1
);
double
qri
,
*
cut_bucksqi
,
*
buck1i
,
*
buck2i
,
*
rhoinvi
;
vector
xi
,
d
;
ineighn
=
(
ineigh
=
list
->
ilist_middle
)
+
list
->
inum_middle
;
for
(;
ineigh
<
ineighn
;
++
ineigh
)
{
// loop over my atoms
i
=
*
ineigh
;
fi
=
f0
+
3
*
i
;
if
(
order1
)
qri
=
qqrd2e
*
q
[
i
];
memcpy
(
xi
,
x0
+
(
i
+
(
i
<<
1
)),
sizeof
(
vector
));
cut_bucksqi
=
cut_bucksq
[
typei
=
type
[
i
]];
buck1i
=
buck1
[
typei
];
buck2i
=
buck2
[
typei
];
rhoinvi
=
rhoinv
[
typei
];
jneighn
=
(
jneigh
=
list
->
firstneigh_middle
[
i
])
+
list
->
numneigh_middle
[
i
];
for
(;
jneigh
<
jneighn
;
++
jneigh
)
{
// loop over neighbors
j
=
*
jneigh
;
ni
=
sbmask
(
j
);
j
&=
NEIGHMASK
;
{
register
double
*
xj
=
x0
+
(
j
+
(
j
<<
1
));
d
[
0
]
=
xi
[
0
]
-
xj
[
0
];
// pair vector
d
[
1
]
=
xi
[
1
]
-
xj
[
1
];
d
[
2
]
=
xi
[
2
]
-
xj
[
2
];
}
if
((
rsq
=
vec_dot
(
d
,
d
))
>=
cut_out_off_sq
)
continue
;
if
(
rsq
<=
cut_in_off_sq
)
continue
;
r2inv
=
1.0
/
rsq
;
r
=
sqrt
(
rsq
);
if
(
order1
&&
(
rsq
<
cut_coulsq
))
// coulombic
force_coul
=
ni
==
0
?
qri
*
q
[
j
]
/
r
:
qri
*
q
[
j
]
/
r
*
special_coul
[
ni
];
if
(
rsq
<
cut_bucksqi
[
typej
=
type
[
j
]])
{
// buckingham
register
double
rn
=
r2inv
*
r2inv
*
r2inv
,
expr
=
exp
(
-
r
*
rhoinvi
[
typej
]);
force_buck
=
ni
==
0
?
(
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
])
:
(
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
])
*
special_lj
[
ni
];
}
else
force_buck
=
0.0
;
fpair
=
(
force_coul
+
force_buck
)
*
r2inv
;
if
(
rsq
<
cut_in_on_sq
)
{
// switching
register
double
rsw
=
(
sqrt
(
rsq
)
-
cut_in_off
)
/
cut_in_diff
;
fpair
*=
rsw
*
rsw
*
(
3.0
-
2.0
*
rsw
);
}
if
(
rsq
>
cut_out_on_sq
)
{
register
double
rsw
=
(
sqrt
(
rsq
)
-
cut_out_on
)
/
cut_out_diff
;
fpair
*=
1.0
+
rsw
*
rsw
*
(
2.0
*
rsw
-
3.0
);
}
if
(
newton_pair
||
j
<
nlocal
)
{
// force update
register
double
*
fj
=
f0
+
(
j
+
(
j
<<
1
)),
f
;
fi
[
0
]
+=
f
=
d
[
0
]
*
fpair
;
fj
[
0
]
-=
f
;
fi
[
1
]
+=
f
=
d
[
1
]
*
fpair
;
fj
[
1
]
-=
f
;
fi
[
2
]
+=
f
=
d
[
2
]
*
fpair
;
fj
[
2
]
-=
f
;
}
else
{
fi
[
0
]
+=
d
[
0
]
*
fpair
;
fi
[
1
]
+=
d
[
1
]
*
fpair
;
fi
[
2
]
+=
d
[
2
]
*
fpair
;
}
}
}
}
/* ---------------------------------------------------------------------- */
void
PairBuckLongCoulLong
::
compute_outer
(
int
eflag
,
int
vflag
)
{
double
evdwl
,
ecoul
,
fpair
,
fvirial
;
evdwl
=
ecoul
=
0.0
;
if
(
eflag
||
vflag
)
ev_setup
(
eflag
,
vflag
);
else
evflag
=
0
;
double
**
x
=
atom
->
x
,
*
x0
=
x
[
0
];
double
**
f
=
atom
->
f
,
*
f0
=
f
[
0
],
*
fi
=
f0
;
double
*
q
=
atom
->
q
;
int
*
type
=
atom
->
type
;
int
nlocal
=
atom
->
nlocal
;
double
*
special_coul
=
force
->
special_coul
;
double
*
special_lj
=
force
->
special_lj
;
int
newton_pair
=
force
->
newton_pair
;
double
qqrd2e
=
force
->
qqrd2e
;
int
i
,
j
,
order1
=
ewald_order
&
(
1
<<
1
),
order6
=
ewald_order
&
(
1
<<
6
);
int
*
ineigh
,
*
ineighn
,
*
jneigh
,
*
jneighn
,
typei
,
typej
,
ni
,
respa_flag
;
double
qi
=
0.0
,
qri
=
0.0
,
*
cutsqi
,
*
cut_bucksqi
,
*
buck1i
,
*
buck2i
,
*
buckai
,
*
buckci
,
*
rhoinvi
,
*
offseti
;
double
r
,
rsq
,
r2inv
,
force_coul
,
force_buck
;
double
g2
=
g_ewald_6
*
g_ewald_6
,
g6
=
g2
*
g2
*
g2
,
g8
=
g6
*
g2
;
double
respa_buck
=
0.0
,
respa_coul
=
0.0
,
frespa
=
0.0
;
vector
xi
,
d
;
double
cut_in_off
=
cut_respa
[
2
];
double
cut_in_on
=
cut_respa
[
3
];
double
cut_in_diff
=
cut_in_on
-
cut_in_off
;
double
cut_in_off_sq
=
cut_in_off
*
cut_in_off
;
double
cut_in_on_sq
=
cut_in_on
*
cut_in_on
;
ineighn
=
(
ineigh
=
list
->
ilist
)
+
list
->
inum
;
for
(;
ineigh
<
ineighn
;
++
ineigh
)
{
// loop over my atoms
i
=
*
ineigh
;
fi
=
f0
+
3
*
i
;
if
(
order1
)
qri
=
(
qi
=
q
[
i
])
*
qqrd2e
;
// initialize constants
offseti
=
offset
[
typei
=
type
[
i
]];
buck1i
=
buck1
[
typei
];
buck2i
=
buck2
[
typei
];
buckai
=
buck_a
[
typei
];
buckci
=
buck_c
[
typei
];
rhoinvi
=
rhoinv
[
typei
];
cutsqi
=
cutsq
[
typei
];
cut_bucksqi
=
cut_bucksq
[
typei
];
memcpy
(
xi
,
x0
+
(
i
+
(
i
<<
1
)),
sizeof
(
vector
));
jneighn
=
(
jneigh
=
list
->
firstneigh
[
i
])
+
list
->
numneigh
[
i
];
for
(;
jneigh
<
jneighn
;
++
jneigh
)
{
// loop over neighbors
j
=
*
jneigh
;
ni
=
sbmask
(
j
);
j
&=
NEIGHMASK
;
{
register
double
*
xj
=
x0
+
(
j
+
(
j
<<
1
));
d
[
0
]
=
xi
[
0
]
-
xj
[
0
];
// pair vector
d
[
1
]
=
xi
[
1
]
-
xj
[
1
];
d
[
2
]
=
xi
[
2
]
-
xj
[
2
];
}
if
((
rsq
=
vec_dot
(
d
,
d
))
>=
cutsqi
[
typej
=
type
[
j
]])
continue
;
r2inv
=
1.0
/
rsq
;
r
=
sqrt
(
rsq
);
frespa
=
1.0
;
//check whether and how to compute respa corrections
respa_coul
=
0.0
;
respa_buck
=
0.0
;
respa_flag
=
rsq
<
cut_in_on_sq
?
1
:
0
;
if
(
respa_flag
&&
(
rsq
>
cut_in_off_sq
))
{
register
double
rsw
=
(
r
-
cut_in_off
)
/
cut_in_diff
;
frespa
=
1
-
rsw
*
rsw
*
(
3.0
-
2.0
*
rsw
);
}
if
(
order1
&&
(
rsq
<
cut_coulsq
))
{
// coulombic
if
(
!
ncoultablebits
||
rsq
<=
tabinnersq
)
{
// series real space
register
double
s
=
qri
*
q
[
j
];
if
(
respa_flag
)
// correct for respa
respa_coul
=
ni
==
0
?
frespa
*
s
/
r
:
frespa
*
s
/
r
*
special_coul
[
ni
];
register
double
x
=
g_ewald
*
r
,
t
=
1.0
/
(
1.0
+
EWALD_P
*
x
);
if
(
ni
==
0
)
{
s
*=
g_ewald
*
exp
(
-
x
*
x
);
force_coul
=
(
t
*=
((((
t
*
A5
+
A4
)
*
t
+
A3
)
*
t
+
A2
)
*
t
+
A1
)
*
s
/
x
)
+
EWALD_F
*
s
-
respa_coul
;
if
(
eflag
)
ecoul
=
t
;
}
else
{
// correct for special
register
double
ri
=
s
*
(
1.0
-
special_coul
[
ni
])
/
r
;
s
*=
g_ewald
*
exp
(
-
x
*
x
);
force_coul
=
(
t
*=
((((
t
*
A5
+
A4
)
*
t
+
A3
)
*
t
+
A2
)
*
t
+
A1
)
*
s
/
x
)
+
EWALD_F
*
s
-
ri
-
respa_coul
;
if
(
eflag
)
ecoul
=
t
-
ri
;
}
}
// table real space
else
{
if
(
respa_flag
)
{
register
double
s
=
qri
*
q
[
j
];
respa_coul
=
ni
==
0
?
frespa
*
s
/
r
:
frespa
*
s
/
r
*
special_coul
[
ni
];
}
register
union_int_float_t
t
;
t
.
f
=
rsq
;
register
const
int
k
=
(
t
.
i
&
ncoulmask
)
>>
ncoulshiftbits
;
register
double
f
=
(
rsq
-
rtable
[
k
])
*
drtable
[
k
],
qiqj
=
qi
*
q
[
j
];
if
(
ni
==
0
)
{
force_coul
=
qiqj
*
(
ftable
[
k
]
+
f
*
dftable
[
k
]);
if
(
eflag
)
ecoul
=
qiqj
*
(
etable
[
k
]
+
f
*
detable
[
k
]);
}
else
{
// correct for special
t
.
f
=
(
1.0
-
special_coul
[
ni
])
*
(
ctable
[
k
]
+
f
*
dctable
[
k
]);
force_coul
=
qiqj
*
(
ftable
[
k
]
+
f
*
dftable
[
k
]
-
t
.
f
);
if
(
eflag
)
{
t
.
f
=
(
1.0
-
special_coul
[
ni
])
*
(
ptable
[
k
]
+
f
*
dptable
[
k
]);
ecoul
=
qiqj
*
(
etable
[
k
]
+
f
*
detable
[
k
]
-
t
.
f
);
}
}
}
}
else
force_coul
=
respa_coul
=
ecoul
=
0.0
;
if
(
rsq
<
cut_bucksqi
[
typej
])
{
// buckingham
register
double
rn
=
r2inv
*
r2inv
*
r2inv
,
expr
=
exp
(
-
r
*
rhoinvi
[
typej
]);
if
(
respa_flag
)
respa_buck
=
ni
==
0
?
// correct for respa
frespa
*
(
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
])
:
frespa
*
(
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
])
*
special_lj
[
ni
];
if
(
order6
)
{
// long-range form
if
(
!
ndisptablebits
||
rsq
<=
tabinnerdispsq
)
{
register
double
x2
=
g2
*
rsq
,
a2
=
1.0
/
x2
;
x2
=
a2
*
exp
(
-
x2
)
*
buckci
[
typej
];
if
(
ni
==
0
)
{
force_buck
=
r
*
expr
*
buck1i
[
typej
]
-
g8
*
(((
6.0
*
a2
+
6.0
)
*
a2
+
3.0
)
*
a2
+
1.0
)
*
x2
*
rsq
-
respa_buck
;
if
(
eflag
)
evdwl
=
expr
*
buckai
[
typej
]
-
g6
*
((
a2
+
1.0
)
*
a2
+
0.5
)
*
x2
;
}
else
{
// correct for special
register
double
f
=
special_lj
[
ni
],
t
=
rn
*
(
1.0
-
f
);
force_buck
=
f
*
r
*
expr
*
buck1i
[
typej
]
-
g8
*
(((
6.0
*
a2
+
6.0
)
*
a2
+
3.0
)
*
a2
+
1.0
)
*
x2
*
rsq
+
t
*
buck2i
[
typej
]
-
respa_buck
;
if
(
eflag
)
evdwl
=
f
*
expr
*
buckai
[
typej
]
-
g6
*
((
a2
+
1.0
)
*
a2
+
0.5
)
*
x2
+
t
*
buckci
[
typej
];
}
}
else
{
// table real space
register
union_int_float_t
disp_t
;
disp_t
.
f
=
rsq
;
register
const
int
disp_k
=
(
disp_t
.
i
&
ndispmask
)
>>
ndispshiftbits
;
register
double
f_disp
=
(
rsq
-
rdisptable
[
disp_k
])
*
drdisptable
[
disp_k
];
register
double
rn
=
r2inv
*
r2inv
*
r2inv
;
if
(
ni
==
0
)
{
force_buck
=
r
*
expr
*
buck1i
[
typej
]
-
(
fdisptable
[
disp_k
]
+
f_disp
*
dfdisptable
[
disp_k
])
*
buckci
[
typej
]
-
respa_buck
;
if
(
eflag
)
evdwl
=
expr
*
buckai
[
typej
]
-
(
edisptable
[
disp_k
]
+
f_disp
*
dedisptable
[
disp_k
])
*
buckci
[
typej
];
}
else
{
//special case
register
double
f
=
special_lj
[
ni
],
t
=
rn
*
(
1.0
-
f
);
force_buck
=
f
*
r
*
expr
*
buck1i
[
typej
]
-
(
fdisptable
[
disp_k
]
+
f_disp
*
dfdisptable
[
disp_k
])
*
buckci
[
typej
]
+
t
*
buck2i
[
typej
]
-
respa_buck
;
if
(
eflag
)
evdwl
=
f
*
expr
*
buckai
[
typej
]
-
(
edisptable
[
disp_k
]
+
f_disp
*
dedisptable
[
disp_k
])
*
buckci
[
typej
]
+
t
*
buckci
[
typej
];
}
}
}
else
{
// cut form
if
(
ni
==
0
)
{
force_buck
=
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
]
-
respa_buck
;
if
(
eflag
)
evdwl
=
expr
*
buckai
[
typej
]
-
rn
*
buckci
[
typej
]
-
offseti
[
typej
];
}
else
{
// correct for special
register
double
f
=
special_lj
[
ni
];
force_buck
=
f
*
(
r
*
expr
*
buck1i
[
typej
]
-
rn
*
buck2i
[
typej
])
-
respa_buck
;
if
(
eflag
)
evdwl
=
f
*
(
expr
*
buckai
[
typej
]
-
rn
*
buckci
[
typej
]
-
offseti
[
typej
]);
}
}
}
else
force_buck
=
respa_buck
=
evdwl
=
0.0
;
fpair
=
(
force_coul
+
force_buck
)
*
r2inv
;
if
(
newton_pair
||
j
<
nlocal
)
{
register
double
*
fj
=
f0
+
(
j
+
(
j
<<
1
)),
f
;
fi
[
0
]
+=
f
=
d
[
0
]
*
fpair
;
fj
[
0
]
-=
f
;
fi
[
1
]
+=
f
=
d
[
1
]
*
fpair
;
fj
[
1
]
-=
f
;
fi
[
2
]
+=
f
=
d
[
2
]
*
fpair
;
fj
[
2
]
-=
f
;
}
else
{
fi
[
0
]
+=
d
[
0
]
*
fpair
;
fi
[
1
]
+=
d
[
1
]
*
fpair
;
fi
[
2
]
+=
d
[
2
]
*
fpair
;
}
if
(
evflag
)
{
fvirial
=
(
force_coul
+
force_buck
+
respa_coul
+
respa_buck
)
*
r2inv
;
ev_tally
(
i
,
j
,
nlocal
,
newton_pair
,
evdwl
,
ecoul
,
fvirial
,
d
[
0
],
d
[
1
],
d
[
2
]);
}
}
}
}
/* ---------------------------------------------------------------------- */
double
PairBuckLongCoulLong
::
single
(
int
i
,
int
j
,
int
itype
,
int
jtype
,
double
rsq
,
double
factor_coul
,
double
factor_buck
,
double
&
fforce
)
{
double
f
,
r
,
r2inv
,
r6inv
,
force_coul
,
force_buck
;
double
g2
=
g_ewald_6
*
g_ewald_6
,
g6
=
g2
*
g2
*
g2
,
g8
=
g6
*
g2
,
*
q
=
atom
->
q
;
r
=
sqrt
(
rsq
);
r2inv
=
1.0
/
rsq
;
double
eng
=
0.0
;
if
((
ewald_order
&
2
)
&&
(
rsq
<
cut_coulsq
))
{
// coulombic
if
(
!
ncoultablebits
||
rsq
<=
tabinnersq
)
{
// series real space
register
double
x
=
g_ewald
*
r
;
register
double
s
=
force
->
qqrd2e
*
q
[
i
]
*
q
[
j
],
t
=
1.0
/
(
1.0
+
EWALD_P
*
x
);
f
=
s
*
(
1.0
-
factor_coul
)
/
r
;
s
*=
g_ewald
*
exp
(
-
x
*
x
);
force_coul
=
(
t
*=
((((
t
*
A5
+
A4
)
*
t
+
A3
)
*
t
+
A2
)
*
t
+
A1
)
*
s
/
x
)
+
EWALD_F
*
s
-
f
;
eng
+=
t
-
f
;
}
else
{
// table real space
register
union_int_float_t
t
;
t
.
f
=
rsq
;
register
const
int
k
=
(
t
.
i
&
ncoulmask
)
>>
ncoulshiftbits
;
register
double
f
=
(
rsq
-
rtable
[
k
])
*
drtable
[
k
],
qiqj
=
q
[
i
]
*
q
[
j
];
t
.
f
=
(
1.0
-
factor_coul
)
*
(
ctable
[
k
]
+
f
*
dctable
[
k
]);
force_coul
=
qiqj
*
(
ftable
[
k
]
+
f
*
dftable
[
k
]
-
t
.
f
);
eng
+=
qiqj
*
(
etable
[
k
]
+
f
*
detable
[
k
]
-
t
.
f
);
}
}
else
force_coul
=
0.0
;
if
(
rsq
<
cut_bucksq
[
itype
][
jtype
])
{
// buckingham
register
double
expr
=
factor_buck
*
exp
(
-
sqrt
(
rsq
)
*
rhoinv
[
itype
][
jtype
]);
r6inv
=
r2inv
*
r2inv
*
r2inv
;
if
(
ewald_order
&
64
)
{
// long-range
register
double
x2
=
g2
*
rsq
,
a2
=
1.0
/
x2
,
t
=
r6inv
*
(
1.0
-
factor_buck
);
x2
=
a2
*
exp
(
-
x2
)
*
buck_c
[
itype
][
jtype
];
force_buck
=
buck1
[
itype
][
jtype
]
*
r
*
expr
-
g8
*
(((
6.0
*
a2
+
6.0
)
*
a2
+
3.0
)
*
a2
+
a2
)
*
x2
*
rsq
+
t
*
buck2
[
itype
][
jtype
];
eng
+=
buck_a
[
itype
][
jtype
]
*
expr
-
g6
*
((
a2
+
1.0
)
*
a2
+
0.5
)
*
x2
+
t
*
buck_c
[
itype
][
jtype
];
}
else
{
// cut
force_buck
=
buck1
[
itype
][
jtype
]
*
r
*
expr
-
factor_buck
*
buck_c
[
itype
][
jtype
]
*
r6inv
;
eng
+=
buck_a
[
itype
][
jtype
]
*
expr
-
factor_buck
*
(
buck_c
[
itype
][
jtype
]
*
r6inv
-
offset
[
itype
][
jtype
]);
}
}
else
force_buck
=
0.0
;
fforce
=
(
force_coul
+
force_buck
)
*
r2inv
;
return
eng
;
}
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