manifold_thylakoid_shared.h
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manifold_thylakoid_shared.h
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			#ifndef MANIFOLD_THYLAKOID_SHARED_H
			#define MANIFOLD_THYLAKOID_SHARED_H


			#include "lmptype.h"
			#include <vector>

			namespace LAMMPS_NS {

			namespace user_manifold {


			// The thylakoid is composed of many parts
			struct thyla_part {
			enum thyla_types {
			THYLA_TYPE_PLANE,
			THYLA_TYPE_SPHERE,
			THYLA_TYPE_CYL,
			THYLA_TYPE_CYL_TO_PLANE
			};

			thyla_part( int type, double *args, double xlo, double ylo, double zlo,
			double xhi, double yhi, double zhi );
			thyla_part() : type(-1), x0(-1337), y0(-1337), z0(-1337){}
			~thyla_part();

			double g( const double *x );
			void n( const double x, double n );

			int type;
			double params[7];
			double tol;
			int maxit;

			int err_flag;
			tagint a_id;

			double xlo, xhi, ylo, yhi, zlo, zhi;
			double x0, y0, z0;

			}; // struct thyla_part



			struct thyla_part_geom {
			thyla_part_geom() : pt(3), lo(3), hi(3){}
			std::vector<double> pt, lo, hi;

			// Function for mirroring thyla_geoms:
			enum DIRS { DIR_X, DIR_Y, DIR_Z };
			static void mirror( unsigned int axis, thyla_part_geom *m,
			const thyla_part_geom *o );

			}; // struct thyla_part_geom


			} // namespace user_manifold


			} // namespace LAMMPS_NS


			#endif // MANIFOLD_THYLAKOID_SHARED_H