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atom_vec_body.h
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Mon, May 6, 23:35

atom_vec_body.h
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/* -*- c++ -*- ----------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
http://lammps.sandia.gov, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#ifdef ATOM_CLASS
AtomStyle(body,AtomVecBody)
#else
#ifndef LMP_ATOM_VEC_BODY_H
#define LMP_ATOM_VEC_BODY_H
#include "atom_vec.h"
#include "my_pool_chunk.h"
namespace LAMMPS_NS {
class AtomVecBody : public AtomVec {
public:
class Body *bptr;
struct Bonus {
double quat[4];
double inertia[3];
int ninteger,ndouble;
int iindex,dindex;
int *ivalue;
double *dvalue;
int ilocal;
};
struct Bonus *bonus;
AtomVecBody(class LAMMPS *);
~AtomVecBody();
void process_args(int, char **);
void grow(int);
void grow_reset();
void copy(int, int, int);
int pack_comm(int, int *, double *, int, int *);
int pack_comm_vel(int, int *, double *, int, int *);
int pack_comm_hybrid(int, int *, double *);
void unpack_comm(int, int, double *);
void unpack_comm_vel(int, int, double *);
int unpack_comm_hybrid(int, int, double *);
int pack_reverse(int, int, double *);
int pack_reverse_hybrid(int, int, double *);
void unpack_reverse(int, int *, double *);
int unpack_reverse_hybrid(int, int *, double *);
int pack_border(int, int *, double *, int, int *);
int pack_border_vel(int, int *, double *, int, int *);
int pack_border_hybrid(int, int *, double *);
void unpack_border(int, int, double *);
void unpack_border_vel(int, int, double *);
int unpack_border_hybrid(int, int, double *);
int pack_exchange(int, double *);
int unpack_exchange(double *);
int size_restart();
int pack_restart(int, double *);
int unpack_restart(double *);
void create_atom(int, double *);
void data_atom(double *, imageint, char **);
int data_atom_hybrid(int, char **);
void data_vel(int, char **);
int data_vel_hybrid(int, char **);
void pack_data(double **);
int pack_data_hybrid(int, double *);
void write_data(FILE *, int, double **);
int write_data_hybrid(FILE *, double *);
void pack_vel(double **);
int pack_vel_hybrid(int, double *);
void write_vel(FILE *, int, double **);
int write_vel_hybrid(FILE *, double *);
bigint memory_usage();
// manipulate Bonus data structure for extra atom info
void clear_bonus();
void data_body(int, int, int, int *, double *);
// methods used by other classes to query/set body info
double radius_body(int, int, int *, double *);
void set_quat(int, double *);
private:
tagint *tag;
int *type,*mask;
imageint *image;
double **x,**v,**f;
double *radius;
double *rmass;
double **angmom,**torque;
int *body;
int nlocal_bonus,nghost_bonus,nmax_bonus;
int intdoubleratio; // sizeof(double) / sizeof(int)
MyPoolChunk<int> *icp;
MyPoolChunk<double> *dcp;
void grow_bonus();
void copy_bonus(int, int);
//void check(int);
};
}
#endif
#endif
/* ERROR/WARNING messages:
E: Internal error in atom_style body
This error should not occur. Contact the developers.
E: Invalid atom_style body command
No body style argument was provided.
E: Unknown body style
The choice of body style is unknown.
E: Per-processor system is too big
The number of owned atoms plus ghost atoms on a single
processor must fit in 32-bit integer.
E: Invalid atom type in Atoms section of data file
Atom types must range from 1 to specified # of types.
E: Invalid density in Atoms section of data file
Density value cannot be <= 0.0.
E: Assigning body parameters to non-body atom
Self-explanatory.
E: Assigning quat to non-body atom
Self-explanatory.
*/

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