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lammps/test/hyb3.gpu1.log
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hyb3.gpu1.log
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LAMMPS (7 Jan 2012)
using 4 OpenMP thread(s) per MPI task
package gpu force 0 0 1 threads_per_atom 1
variable x index 1
variable y index 1
variable z index 1
variable xx equal 10*$x
variable xx equal 10*1
variable yy equal 10*$y
variable yy equal 10*1
variable zz equal 10*$z
variable zz equal 10*1
units lj
atom_style charge
newton off
lattice fcc 0.8442
Lattice spacing in x,y,z = 1.6796 1.6796 1.6796
region box block 0 ${xx} 0 ${yy} 0 ${zz}
region box block 0 10 0 ${yy} 0 ${zz}
region box block 0 10 0 10 0 ${zz}
region box block 0 10 0 10 0 10
region half block 0 ${xx} 0 ${yy} 0 4.5
region half block 0 10 0 ${yy} 0 4.5
region half block 0 10 0 10 0 4.5
create_box 2 box
Created orthogonal box = (0 0 0) to (16.796 16.796 16.796)
1 by 1 by 3 MPI processor grid
create_atoms 1 box
Created 4000 atoms
group ga region box
4000 atoms in group ga
group gp region half
2000 atoms in group gp
group gn subtract ga gp
2000 atoms in group gn
set group gp charge 0.5
2000 settings made for charge
set group gn charge -0.5
2000 settings made for charge
set group gn type 2
2000 settings made for type
mass 1 1.0
mass 2 1.1
velocity all create 1.44 87287 loop geom
pair_style hybrid/overlay lj/cut/coul/cut/gpu 2.5 5.0 lj/cut 2.5
pair_coeff 1 1 lj/cut/coul/cut/gpu 1.0 1.0
pair_coeff 1 1 lj/cut 1.0 1.0
pair_coeff 1 2 lj/cut/coul/cut/gpu 0.95 0.9
pair_coeff 1 2 lj/cut 0.95 0.9
pair_coeff 2 2 lj/cut 0.8 0.85
pair_coeff 2 2 lj/cut/coul/cut/gpu 1.0 1.0
neighbor 0.3 bin
neigh_modify delay 0 every 20 check no
fix 1 all nve
timestep 0.003
thermo 100
thermo_style custom step temp evdwl ecoul epair etotal press
run 400
Memory usage per processor = 11.7771 Mbytes
Step Temp E_vdwl E_coul E_pair TotEng Press
0 1.44 -11.227509 9.6114363 -1.6160731 0.54338685 -7.2941577
100 0.92562039 -10.180723 8.8996948 -1.2810284 0.10705505 -0.89765644
200 0.99131582 -10.073098 8.2425849 -1.8305133 -0.34391129 0.48591081
300 1.0509958 -10.14053 8.154242 -1.9862881 -0.41018853 1.0055622
400 1.0820432 -10.202083 8.1806912 -2.0213919 -0.39873278 1.5023549
Loop time of 3.03025 on 12 procs (3 MPI x 4 OpenMP) for 400 steps with 4000 atoms
Pair time (%) = 2.18555 (72.1245)
Neigh time (%) = 0.627224 (20.6988)
Comm time (%) = 0.191438 (6.31757)
Outpt time (%) = 0.012999 (0.428974)
Other time (%) = 0.013037 (0.43023)
Nlocal: 1333.33 ave 1422 max 1203 min
Histogram: 1 0 0 0 0 0 0 1 0 1
Nghost: 9057.33 ave 9242 max 8774 min
Histogram: 1 0 0 0 0 0 0 0 1 1
Neighs: 535129 ave 588795 max 461014 min
Histogram: 1 0 0 0 0 0 0 1 0 1
FullNghs: 708889 ave 772687 max 598661 min
Histogram: 1 0 0 0 0 0 0 0 0 2
Total # of neighbors = 2126666
Ave neighs/atom = 531.667
Neighbor list builds = 20
Dangerous builds = 0
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