Page MenuHomec4science
Files F110166066

windows.html
No OneTemporary
Actions

File Metadata

Created
Fri, Apr 25, 00:13

windows.html
View Options

<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<title>LAMMPS-ICMS Windows Installer Repository</title>
<link rel="shortcut icon" href="ICMS_icon.png" type="image/png">
<script type="text/javascript">
var _gaq = _gaq || [];
_gaq.push(['_setAccount', 'UA-12573382-3']);
_gaq.push(['_trackPageview']);
(function() {
var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
</head>
<body style="font-family: Helvetica,Arial,Verdana, sans-serif; margin-bottom: 2%; margin-top: 2%; margin-left: 5%; margin-right: 5%;">
<div style="display: inline; margin-left: 10px; margin-bottom: 5px; border: 5px; border-style: groove; float: right;">
<img src="lammpswinlogo.png" border="0" style="" width="300" height="182">
</div>
<h1>LAMMPS-ICMS Windows Installer Repository</h1>
<p align="justify">
This repository is hosting pre-compiled Windows installers of the
<a href="http://lammps.sandia.gov/" target="_blank">LAMMPS</a>
molecular dynamics simulation software package.
The binaries are built semi-automaticall with MinGW64 Linux to Windows
cross compilers using up-to-date snapshots of the
<a href="http://goo.gl/oKYI" target="_blank">LAMMPS-ICMS</a>
<a href="http://git.icms.temple.edu/git/" target="_blank">git repository</a>
hosted at the <a href="http://www.temple.edu/cst/icms/" target="_blank">
Institute for Computational Molecular Science</a> at Temple University.
The LAMMPS binaries contain <b>all</b> optional packages included in
the source distribution <b>except</b>: <u>KIM</u> (license is not GPL compatible),
<u>USER-CUDA</u> (CUDA does not support cross compilation), and <u>REAX</u>
(superseded by the <u>USER-REAXC</u> package).
</p>
<div style="display: inline; margin-right: 10px; margin-bottom: 5px; border: 5px; float: left;">
<img src="opencl_logo_75_75.png" border="0" style="" width="75" height="75">
</div>
<strong>Some Notes on GPU Support</strong>
<div align="justify">
These Windows binaries include GPU acceleration via the <u>GPU</u> package.
This is achieved through compiling the GPU package in OpenCL mode and linking
to an <a href="http://www.khronos.org/opencl/" target="_blank">OpenCL v1.2</a>
compatible ICD loader. This means the executables do not contain any vendor
provided code and should be compatible with GPUs from both
<a href="http://developer.amd.com/resources/heterogeneous-computing/opencl-zone/" target="_blank">AMD</a>
and <a href="http://www.nvidia.com/opencl/" target="_blank">Nvidia</a>.
The GPU package has been compiled for mixed precision computation and
is currently somewhat tuned for Nvidia (Fermi generation) GPUs.
It <u>does not yet</u> work with OpenCL drivers for CPUs (like those included
in the Intel and AMD OpenCL SDKs). Work is under way to improve and expand
OpenCL support in LAMMPS and particularly provide means so that the
individual kernels are optimized for specific platforms at runtime.
Please watch <a href="http://users.nccs.gov/~wb8/gpu/" target="_blank">
Mike Brown's LAMMPS accelerator library web page</a> for status updates.<br>
<br>
When reporting problems, please always include the exact
<u>version of the installer</u> and the output of the
<strong><code>ocl_get_devices</code></strong> tool.
</div>
<div style="clear:both;"></div>
<hr>
<div style="background-color: #e8e8f0;">
<br>
Looking for pre-compiled Linux binary RPMs?
They are just a <a href="index.html">mouse click away</a>.<br>
<br>
</div>
<hr width="100%">
<h2>Installing LAMMPS on Windows</h2>
<div style="display: inline; margin-left: 10px; border: 5px; border-style: groove; float: right;">
<img src="win-installer-screenshot.png" border="0" style="" width="286" height="196">
</div>
<div style="background-color: #e8e8f0;">
<div align="justify">
There are installer packages for 32-bit and 64-bit
versions of Windows available.
<ul>
<li><a href="windows/32bit/">32-bit Windows download area</a></li>
<li><a href="windows/64bit/">64-bit Windows download area</a></li>
</ul>
The respective download directory will contain installer
packages that are labeled with the date they were compiled on
and one package labeled as <i>latest</i>. It is usually
recommended to download and install the latest package, but the
others are provided in case there is a problem with it.
Download the installer executable suitable for your machine,
execute it, and follow the instructions in the dialogs.
Each version will install into a different directory, so it
is possible to have multiple versions installed at the same
time. Both kinds of packages contain:
</div>
<ul>
<li>A regular multi-threaded LAMMPS executable called <strong><code>lmp_serial</code></strong>.
This should <u>always</u> work.</li>
<li>A multi-threaded LAMMPS executable that also supports
parallel execution via MPI message passing. This
executable is called <strong><code>lmp_mpi</code></strong>
and requires installation of a suitable MPICH2 package to work.</li>
<li>the LAMMPS manual in PDF format</li>
<li>the <a href="http://colvars.github.io/" target="_blank">colvars</a>
reference manual in PDF format</li>
<li>the potential files bundled with the LAMMPS source code</li>
<li>most of the example inputs, reference outputs and related files</li>
<li>the benchmark inputs and reference outputs</li>
<li>the tools <strong><code>restart2data, binary2txt, chain, msi2lmp,
ocl_get_devices</code></strong></li>
</ul>
<p align="justify">Both executables will run in serial when executed directly.
Please see below for instructions on how to perform parallel runs.
To use the MPI based parallelism, you also need to install
<a href="http://www.mpich.org/" target="_blank">MPICH2 from Argonne lab</a>.
For 32-bit Windows you have to download and install
<a href="http://www.mpich.org/static/tarballs/1.4.1p1/mpich2-1.4.1p1-win-ia32.msi">
mpich2-1.4.1p1-win-ia32.msi</a> or any compatible version.
Correspondingly, for 64-bit Windows you have to download and install
<a href="http://www.mpich.org/static/tarballs/1.4.1p1/mpich2-1.4.1p1-win-x86-64.msi">
mpich2-1.4.1p1-win-x86-64.msi</a> or any compatible version.
</p>
</div>
<hr width="100%">
<h2>Running LAMMPS on Windows</h2>
<h3>General Comments</h3>
<p align="justify">
LAMMPS is a text mode program, so you have to click on the
<i>Command Prompt</i> entry in the windows start menu, launch the
<i>Windows Power Shell</i>, or simply execute the command
<strong><code>cmd</code></strong> from <i>Start -&gt; Run</i>.
The LAMMPS manual and the colvars reference manual in PDF format
are linked from the start men, also references to open the
file system browser to view the <i>Benchmarks</i> and <i>Examples</i>
directory tree. The <b>PATH</b> environment variable is automatically
set by the installer, so that the bundled executables from everywhere
in the system. Also the <b>LAMMPS_POTENTIALS</b> environment variable
is preset to the folder with the bundled manybody potential files,
so they do not need to be copied into the respective working directory.
</p>
<h3>Serial Execution</h3>
<div style="display: inline; margin-left: 10px; border: 5px; border-style: groove; float: right;">
<a imageanchor="1" href="lammps-icms-on-win7.png" style=""><img src="lammps-icms-on-win7.png" border="0" style="" width="400" height="300"></a>
</div>
<p align="justify">
To run a LAMMPS simulations open a terminal window as outlined above
and change to the directory with your input script and then run either
<strong><code>lmp_serial</code></strong> or <strong><code>lmp_mpi</code></strong>
As described in the LAMMPS manual. For more details and additional command
line flags, please check out the
<a href="http://lammps.sandia.gov/doc/Section_start.html#start_6" target="_blank">
LAMMPS Manual</a>.
</p>
<h3 name="openmp">Multi-threaded Parallel Execution</h3>
<p align="justify">
All LAMMPS binaries from this repository support multi-threading via OpenMP,
however by default only one thread is enabled. To enable more threads, e.g. four,
you need to either set it at the command line prompt via
<strong><code>set OMP_NUM_THREADS=4</code></strong> or use the
<a href="http://lammps.sandia.gov/doc/package.html" target="_blank">package omp</a>
command in your input script.</p>
<p align="justify">
After enabling the use of multiple threads, you <b>also</b> have to select
styles in LAMMPS, that are multi-thread enabled. Those are usually identified
by the <i>/omp</i> suffix. Those can be selected explicitly and selectively,
or with the
<a href="http://lammps.sandia.gov/doc/package.html" target="_blank">suffix</a>
command or - most conveniently - via using the <strong><code>-sfs&nbsp;omp</code></strong>
command line flag to the LAMMPS executable.
</p>
<h3 name="mpi">Message Passing (MPI) Parallel Execution</h3>
<p align="justify">
Only the MPI-enabled binaries from the repository support parallel execution
via MPI (which can be combined with OpenMPI multi-threading). For that you also
need to install <a href="http://www.mpich.org/" target="_blank">MPICH2 from Argonne lab</a>.
The installer does not contain it and does not check for it.
</p>
<p align="justify">
MPI parallel executables have to be launched with
<strong><code>mpiexec -np # lmp_mpi ...</code></strong>
with "#" being then number of parallel processes to start. You may be asked by a process
called <i>smpd.exe</i> for a password, which usually can be any word, unless you are
trying to run across multiple separate Windows machines. For more details, please refer
to the <a href="http://www.mpich.org/documentation/guides/" target="_blank">
MPICH2 Documentation</a>.
</p>
<hr>
<address><a href="http://goo.gl/1wk0" target="_blank">Axel Kohlmeyer</a></address>
<!-- Created: Fri Jun 14 08:59:35 CEST 2013 -->
<!-- hhmts start -->
Last modified: Wed Jul 3 20:20:05 CEST 2013
<!-- hhmts end -->
</body>
</html>

Event Timeline

c4science · Help