# -- Init section -- include system.in.init # -- Atom definition section -- read_data system.data # -- Settings Section -- include system.in.settings # Optional: Make sure the pairwise energies look reasonable: #pair_write 2 2 1001 r 2.6 16.0 test_tail-tail.dat t-t 0 0 #pair_write 2 3 1001 r 2.6 16.0 test_tail-head.dat t-h 0 0 #pair_write 1 2 1001 r 2.6 16.0 test_int-tail.dat i-t 0 0 #pair_write 1 1 2573 r 2.6 16.0 test_int-int.dat i-i 0 0 #pair_write 1 3 1001 r 2.6 16.0 test_int-head.dat i-h 0 0 #pair_write 3 3 1001 r 2.6 16.0 test_head-head.dat h-h 0 0 # -- Run section -- dump 1 all custom 50 traj_min.lammpstrj id mol type x y z ix iy iz minimize 1.0e-5 1.0e-7 500 2000 write_restart system_after_min.rst