lammps/tools/moltemplate/examples/coarse_grained/3bodyWater+hydrocarbons_MW+TraPPE12150ffa7397master
lammps/tools/moltemplate/examples/coarse_grained/3bodyWater+hydrocarbons_MW+TraPPE
12150ffa7397master
3bodyWater+hydrocarbons_MW+TraPPE
3bodyWater+hydrocarbons_MW+TraPPE
README.txt
README.txt
This example was intended to demonstrate the flexibility of LAMMPS and
moltemplate.
This is a relatively complex example containing two different types of
coarse-grained (united-atom) molecules. This simulation uses the 3-body
(non-pairwise-additive) coarse-grained "mW" water model:
Molinero, V. and Moore, E.B., J. Phys. Chem. B 2009, 113, 4008-4016
Simulations using the "mW" water model can be several orders of magnitude
faster than simulations using simple all-atom models such as SPCE or TIP3P.
The united-atom TraPPE force field was used for the cyclododecane molecules.
Any force-field available in LAMMPS can be used with moltemplate. New force-fields are added by end users regularly. For a current list, see:
http://lammps.sandia.gov/doc/Section_commands.html#pair-style-potentials
More detailed instructions on how to build LAMMPS input files and
run a short simulation are provided in other README files.
step 1)
README_setup.sh
step 2)
README_run.sh
-------- REQUIREMENTS: ---------
This example requires the "MANYBODY" package.
If lammps complains of a missing pair style enter "make yes-MANYBODY"
into the shell before compiling lammps. For details see:
http://lammps.sandia.gov/doc/Section_start.html#start_3
moltemplate.
This is a relatively complex example containing two different types of
coarse-grained (united-atom) molecules. This simulation uses the 3-body
(non-pairwise-additive) coarse-grained "mW" water model:
Molinero, V. and Moore, E.B., J. Phys. Chem. B 2009, 113, 4008-4016
Simulations using the "mW" water model can be several orders of magnitude
faster than simulations using simple all-atom models such as SPCE or TIP3P.
The united-atom TraPPE force field was used for the cyclododecane molecules.
Any force-field available in LAMMPS can be used with moltemplate. New force-fields are added by end users regularly. For a current list, see:
http://lammps.sandia.gov/doc/Section_commands.html#pair-style-potentials
More detailed instructions on how to build LAMMPS input files and
run a short simulation are provided in other README files.
step 1)
README_setup.sh
step 2)
README_run.sh
-------- REQUIREMENTS: ---------
This example requires the "MANYBODY" package.
If lammps complains of a missing pair style enter "make yes-MANYBODY"
into the shell before compiling lammps. For details see:
http://lammps.sandia.gov/doc/Section_start.html#start_3
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