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<!DOCTYPE html>
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<title>
Index
—
LAMMPS 15 Dec 2015 documentation
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class=
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LAMMPS
</a>
<div
role=
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<form
id=
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<ul>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
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"Section_intro.html"
>
1. Introduction
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_start.html"
>
2. Getting Started
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
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>
3. Commands
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_packages.html"
>
4. Packages
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_accelerate.html"
>
5. Accelerating LAMMPS performance
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_howto.html"
>
6. How-to discussions
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_example.html"
>
7. Example problems
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_perf.html"
>
8. Performance
&
scalability
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_tools.html"
>
9. Additional tools
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_modify.html"
>
10. Modifying
&
extending LAMMPS
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_python.html"
>
11. Python interface to LAMMPS
</a></li>
<li
class=
"toctree-l1"
><a
class=
"reference internal"
href=
"Section_errors.html"
>
12. Errors
</a></li>
<li
class=
"toctree-l1"
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class=
"reference internal"
href=
"Section_history.html"
>
13. Future and history
</a></li>
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LAMMPS
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<div
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<div
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aria-label=
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Docs
</a>
»
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<li></li>
<li
class=
"wy-breadcrumbs-aside"
>
<a
href=
"http://lammps.sandia.gov"
>
Website
</a>
<a
href=
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>
Commands
</a>
</li>
</ul>
<hr/>
</div>
<div
role=
"main"
class=
"document"
itemscope=
"itemscope"
itemtype=
"http://schema.org/Article"
>
<div
itemprop=
"articleBody"
>
<h1
id=
"index"
>
Index
</h1>
<div
class=
"genindex-jumpbox"
>
<a
href=
"#A"
><strong>
A
</strong></a>
|
<a
href=
"#B"
><strong>
B
</strong></a>
|
<a
href=
"#C"
><strong>
C
</strong></a>
|
<a
href=
"#D"
><strong>
D
</strong></a>
|
<a
href=
"#E"
><strong>
E
</strong></a>
|
<a
href=
"#F"
><strong>
F
</strong></a>
|
<a
href=
"#G"
><strong>
G
</strong></a>
|
<a
href=
"#I"
><strong>
I
</strong></a>
|
<a
href=
"#J"
><strong>
J
</strong></a>
|
<a
href=
"#K"
><strong>
K
</strong></a>
|
<a
href=
"#L"
><strong>
L
</strong></a>
|
<a
href=
"#M"
><strong>
M
</strong></a>
|
<a
href=
"#N"
><strong>
N
</strong></a>
|
<a
href=
"#P"
><strong>
P
</strong></a>
|
<a
href=
"#Q"
><strong>
Q
</strong></a>
|
<a
href=
"#R"
><strong>
R
</strong></a>
|
<a
href=
"#S"
><strong>
S
</strong></a>
|
<a
href=
"#T"
><strong>
T
</strong></a>
|
<a
href=
"#U"
><strong>
U
</strong></a>
|
<a
href=
"#V"
><strong>
V
</strong></a>
|
<a
href=
"#W"
><strong>
W
</strong></a>
</div>
<h2
id=
"A"
>
A
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"angle_coeff.html#index-0"
>
angle_coeff
</a>
</dt>
<dt><a
href=
"angle_style.html#index-0"
>
angle_style
</a>
</dt>
<dt><a
href=
"angle_charmm.html#index-0"
>
angle_style charmm
</a>
</dt>
<dt><a
href=
"angle_class2.html#index-0"
>
angle_style class2
</a>
</dt>
<dt><a
href=
"angle_cosine.html#index-0"
>
angle_style cosine
</a>
</dt>
<dt><a
href=
"angle_cosine_delta.html#index-0"
>
angle_style cosine/delta
</a>
</dt>
<dt><a
href=
"angle_cosine_periodic.html#index-0"
>
angle_style cosine/periodic
</a>
</dt>
<dt><a
href=
"angle_cosine_shift.html#index-0"
>
angle_style cosine/shift
</a>
</dt>
<dt><a
href=
"angle_cosine_shift_exp.html#index-0"
>
angle_style cosine/shift/exp
</a>
</dt>
<dt><a
href=
"angle_cosine_squared.html#index-0"
>
angle_style cosine/squared
</a>
</dt>
<dt><a
href=
"angle_dipole.html#index-0"
>
angle_style dipole
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"angle_fourier.html#index-0"
>
angle_style fourier
</a>
</dt>
<dt><a
href=
"angle_fourier_simple.html#index-0"
>
angle_style fourier/simple
</a>
</dt>
<dt><a
href=
"angle_harmonic.html#index-0"
>
angle_style harmonic
</a>
</dt>
<dt><a
href=
"angle_hybrid.html#index-0"
>
angle_style hybrid
</a>
</dt>
<dt><a
href=
"angle_none.html#index-0"
>
angle_style none
</a>
</dt>
<dt><a
href=
"angle_quartic.html#index-0"
>
angle_style quartic
</a>
</dt>
<dt><a
href=
"angle_sdk.html#index-0"
>
angle_style sdk
</a>
</dt>
<dt><a
href=
"angle_table.html#index-0"
>
angle_style table
</a>
</dt>
<dt><a
href=
"atom_modify.html#index-0"
>
atom_modify
</a>
</dt>
<dt><a
href=
"atom_style.html#index-0"
>
atom_style
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"B"
>
B
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"balance.html#index-0"
>
balance
</a>
</dt>
<dt><a
href=
"bond_coeff.html#index-0"
>
bond_coeff
</a>
</dt>
<dt><a
href=
"bond_style.html#index-0"
>
bond_style
</a>
</dt>
<dt><a
href=
"bond_class2.html#index-0"
>
bond_style class2
</a>
</dt>
<dt><a
href=
"bond_fene.html#index-0"
>
bond_style fene
</a>
</dt>
<dt><a
href=
"bond_fene_expand.html#index-0"
>
bond_style fene/expand
</a>
</dt>
<dt><a
href=
"bond_harmonic.html#index-0"
>
bond_style harmonic
</a>
</dt>
<dt><a
href=
"bond_harmonic_shift.html#index-0"
>
bond_style harmonic/shift
</a>
</dt>
<dt><a
href=
"bond_harmonic_shift_cut.html#index-0"
>
bond_style harmonic/shift/cut
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"bond_hybrid.html#index-0"
>
bond_style hybrid
</a>
</dt>
<dt><a
href=
"bond_morse.html#index-0"
>
bond_style morse
</a>
</dt>
<dt><a
href=
"bond_none.html#index-0"
>
bond_style none
</a>
</dt>
<dt><a
href=
"bond_nonlinear.html#index-0"
>
bond_style nonlinear
</a>
</dt>
<dt><a
href=
"bond_quartic.html#index-0"
>
bond_style quartic
</a>
</dt>
<dt><a
href=
"bond_table.html#index-0"
>
bond_style table
</a>
</dt>
<dt><a
href=
"boundary.html#index-0"
>
boundary
</a>
</dt>
<dt><a
href=
"box.html#index-0"
>
box
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"C"
>
C
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"change_box.html#index-0"
>
change_box
</a>
</dt>
<dt><a
href=
"clear.html#index-0"
>
clear
</a>
</dt>
<dt><a
href=
"comm_modify.html#index-0"
>
comm_modify
</a>
</dt>
<dt><a
href=
"comm_style.html#index-0"
>
comm_style
</a>
</dt>
<dt><a
href=
"compute.html#index-0"
>
compute
</a>
</dt>
<dt><a
href=
"compute_ackland_atom.html#index-0"
>
compute ackland/atom
</a>
</dt>
<dt><a
href=
"compute_angle_local.html#index-0"
>
compute angle/local
</a>
</dt>
<dt><a
href=
"compute_angmom_chunk.html#index-0"
>
compute angmom/chunk
</a>
</dt>
<dt><a
href=
"compute_basal_atom.html#index-0"
>
compute basal/atom
</a>
</dt>
<dt><a
href=
"compute_body_local.html#index-0"
>
compute body/local
</a>
</dt>
<dt><a
href=
"compute_bond_local.html#index-0"
>
compute bond/local
</a>
</dt>
<dt><a
href=
"compute_centro_atom.html#index-0"
>
compute centro/atom
</a>
</dt>
<dt><a
href=
"compute_chunk_atom.html#index-0"
>
compute chunk/atom
</a>
</dt>
<dt><a
href=
"compute_cluster_atom.html#index-0"
>
compute cluster/atom
</a>
</dt>
<dt><a
href=
"compute_cna_atom.html#index-0"
>
compute cna/atom
</a>
</dt>
<dt><a
href=
"compute_com.html#index-0"
>
compute com
</a>
</dt>
<dt><a
href=
"compute_com_chunk.html#index-0"
>
compute com/chunk
</a>
</dt>
<dt><a
href=
"compute_contact_atom.html#index-0"
>
compute contact/atom
</a>
</dt>
<dt><a
href=
"compute_coord_atom.html#index-0"
>
compute coord/atom
</a>
</dt>
<dt><a
href=
"compute_damage_atom.html#index-0"
>
compute damage/atom
</a>
</dt>
<dt><a
href=
"compute_dihedral_local.html#index-0"
>
compute dihedral/local
</a>
</dt>
<dt><a
href=
"compute_dilatation_atom.html#index-0"
>
compute dilatation/atom
</a>
</dt>
<dt><a
href=
"compute_displace_atom.html#index-0"
>
compute displace/atom
</a>
</dt>
<dt><a
href=
"compute_erotate_asphere.html#index-0"
>
compute erotate/asphere
</a>
</dt>
<dt><a
href=
"compute_erotate_rigid.html#index-0"
>
compute erotate/rigid
</a>
</dt>
<dt><a
href=
"compute_erotate_sphere.html#index-0"
>
compute erotate/sphere
</a>
</dt>
<dt><a
href=
"compute_erotate_sphere_atom.html#index-0"
>
compute erotate/sphere/atom
</a>
</dt>
<dt><a
href=
"compute_event_displace.html#index-0"
>
compute event/displace
</a>
</dt>
<dt><a
href=
"compute_fep.html#index-0"
>
compute fep
</a>
</dt>
<dt><a
href=
"compute_tally.html#index-0"
>
compute force/tally
</a>
</dt>
<dt><a
href=
"compute_group_group.html#index-0"
>
compute group/group
</a>
</dt>
<dt><a
href=
"compute_gyration.html#index-0"
>
compute gyration
</a>
</dt>
<dt><a
href=
"compute_gyration_chunk.html#index-0"
>
compute gyration/chunk
</a>
</dt>
<dt><a
href=
"compute_heat_flux.html#index-0"
>
compute heat/flux
</a>
</dt>
<dt><a
href=
"compute_hexorder_atom.html#index-0"
>
compute hexorder/atom
</a>
</dt>
<dt><a
href=
"compute_improper_local.html#index-0"
>
compute improper/local
</a>
</dt>
<dt><a
href=
"compute_inertia_chunk.html#index-0"
>
compute inertia/chunk
</a>
</dt>
<dt><a
href=
"compute_ke.html#index-0"
>
compute ke
</a>
</dt>
<dt><a
href=
"compute_ke_atom.html#index-0"
>
compute ke/atom
</a>
</dt>
<dt><a
href=
"compute_ke_atom_eff.html#index-0"
>
compute ke/atom/eff
</a>
</dt>
<dt><a
href=
"compute_ke_eff.html#index-0"
>
compute ke/eff
</a>
</dt>
<dt><a
href=
"compute_ke_rigid.html#index-0"
>
compute ke/rigid
</a>
</dt>
<dt><a
href=
"compute_meso_e_atom.html#index-0"
>
compute meso_e/atom
</a>
</dt>
<dt><a
href=
"compute_meso_rho_atom.html#index-0"
>
compute meso_rho/atom
</a>
</dt>
<dt><a
href=
"compute_meso_t_atom.html#index-0"
>
compute meso_t/atom
</a>
</dt>
<dt><a
href=
"compute_msd.html#index-0"
>
compute msd
</a>
</dt>
<dt><a
href=
"compute_msd_chunk.html#index-0"
>
compute msd/chunk
</a>
</dt>
<dt><a
href=
"compute_msd_nongauss.html#index-0"
>
compute msd/nongauss
</a>
</dt>
<dt><a
href=
"compute_omega_chunk.html#index-0"
>
compute omega/chunk
</a>
</dt>
<dt><a
href=
"compute_orientorder_atom.html#index-0"
>
compute orientorder/atom
</a>
</dt>
<dt><a
href=
"compute_pair.html#index-0"
>
compute pair
</a>
</dt>
<dt><a
href=
"compute_pair_local.html#index-0"
>
compute pair/local
</a>
</dt>
<dt><a
href=
"compute_pe.html#index-0"
>
compute pe
</a>
</dt>
<dt><a
href=
"compute_pe_atom.html#index-0"
>
compute pe/atom
</a>
</dt>
<dt><a
href=
"compute_plasticity_atom.html#index-0"
>
compute plasticity/atom
</a>
</dt>
<dt><a
href=
"compute_pressure.html#index-0"
>
compute pressure
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"compute_property_atom.html#index-0"
>
compute property/atom
</a>
</dt>
<dt><a
href=
"compute_property_chunk.html#index-0"
>
compute property/chunk
</a>
</dt>
<dt><a
href=
"compute_property_local.html#index-0"
>
compute property/local
</a>
</dt>
<dt><a
href=
"compute_rdf.html#index-0"
>
compute rdf
</a>
</dt>
<dt><a
href=
"compute_reduce.html#index-0"
>
compute reduce
</a>
</dt>
<dt><a
href=
"compute_saed.html#index-0"
>
compute saed
</a>
</dt>
<dt><a
href=
"compute_slice.html#index-0"
>
compute slice
</a>
</dt>
<dt><a
href=
"compute_smd_contact_radius.html#index-0"
>
compute smd/contact_radius
</a>
</dt>
<dt><a
href=
"compute_smd_damage.html#index-0"
>
compute smd/damage
</a>
</dt>
<dt><a
href=
"compute_smd_hourglass_error.html#index-0"
>
compute smd/hourglass_error
</a>
</dt>
<dt><a
href=
"compute_smd_internal_energy.html#index-0"
>
compute smd/internal_energy
</a>
</dt>
<dt><a
href=
"compute_smd_plastic_strain.html#index-0"
>
compute smd/plastic_strain
</a>
</dt>
<dt><a
href=
"compute_smd_plastic_strain_rate.html#index-0"
>
compute smd/plastic_strain_rate
</a>
</dt>
<dt><a
href=
"compute_smd_rho.html#index-0"
>
compute smd/rho
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_defgrad.html#index-0"
>
compute smd/tlsph_defgrad
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_dt.html#index-0"
>
compute smd/tlsph_dt
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_num_neighs.html#index-0"
>
compute smd/tlsph_num_neighs
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_shape.html#index-0"
>
compute smd/tlsph_shape
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_strain.html#index-0"
>
compute smd/tlsph_strain
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_strain_rate.html#index-0"
>
compute smd/tlsph_strain_rate
</a>
</dt>
<dt><a
href=
"compute_smd_tlsph_stress.html#index-0"
>
compute smd/tlsph_stress
</a>
</dt>
<dt><a
href=
"compute_smd_ulsph_num_neighs.html#index-0"
>
compute smd/ulsph_num_neighs
</a>
</dt>
<dt><a
href=
"compute_smd_ulsph_strain.html#index-0"
>
compute smd/ulsph_strain
</a>
</dt>
<dt><a
href=
"compute_smd_ulsph_strain_rate.html#index-0"
>
compute smd/ulsph_strain_rate
</a>
</dt>
<dt><a
href=
"compute_smd_ulsph_stress.html#index-0"
>
compute smd/ulsph_stress
</a>
</dt>
<dt><a
href=
"compute_smd_vol.html#index-0"
>
compute smd/vol
</a>
</dt>
<dt><a
href=
"compute_sna_atom.html#index-0"
>
compute sna/atom
</a>
</dt>
<dt><a
href=
"compute_stress_atom.html#index-0"
>
compute stress/atom
</a>
</dt>
<dt><a
href=
"compute_temp.html#index-0"
>
compute temp
</a>
</dt>
<dt><a
href=
"compute_temp_asphere.html#index-0"
>
compute temp/asphere
</a>
</dt>
<dt><a
href=
"compute_temp_body.html#index-0"
>
compute temp/body
</a>
</dt>
<dt><a
href=
"compute_temp_chunk.html#index-0"
>
compute temp/chunk
</a>
</dt>
<dt><a
href=
"compute_temp_com.html#index-0"
>
compute temp/com
</a>
</dt>
<dt><a
href=
"compute_temp_cs.html#index-0"
>
compute temp/cs
</a>
</dt>
<dt><a
href=
"compute_temp_deform.html#index-0"
>
compute temp/deform
</a>
</dt>
<dt><a
href=
"compute_temp_deform_eff.html#index-0"
>
compute temp/deform/eff
</a>
</dt>
<dt><a
href=
"compute_temp_drude.html#index-0"
>
compute temp/drude
</a>
</dt>
<dt><a
href=
"compute_temp_eff.html#index-0"
>
compute temp/eff
</a>
</dt>
<dt><a
href=
"compute_temp_partial.html#index-0"
>
compute temp/partial
</a>
</dt>
<dt><a
href=
"compute_temp_profile.html#index-0"
>
compute temp/profile
</a>
</dt>
<dt><a
href=
"compute_temp_ramp.html#index-0"
>
compute temp/ramp
</a>
</dt>
<dt><a
href=
"compute_temp_region.html#index-0"
>
compute temp/region
</a>
</dt>
<dt><a
href=
"compute_temp_region_eff.html#index-0"
>
compute temp/region/eff
</a>
</dt>
<dt><a
href=
"compute_temp_rotate.html#index-0"
>
compute temp/rotate
</a>
</dt>
<dt><a
href=
"compute_temp_sphere.html#index-0"
>
compute temp/sphere
</a>
</dt>
<dt><a
href=
"compute_ti.html#index-0"
>
compute ti
</a>
</dt>
<dt><a
href=
"compute_torque_chunk.html#index-0"
>
compute torque/chunk
</a>
</dt>
<dt><a
href=
"compute_vacf.html#index-0"
>
compute vacf
</a>
</dt>
<dt><a
href=
"compute_vcm_chunk.html#index-0"
>
compute vcm/chunk
</a>
</dt>
<dt><a
href=
"compute_voronoi_atom.html#index-0"
>
compute voronoi/atom
</a>
</dt>
<dt><a
href=
"compute_xrd.html#index-0"
>
compute xrd
</a>
</dt>
<dt><a
href=
"compute_modify.html#index-0"
>
compute_modify
</a>
</dt>
<dt><a
href=
"create_atoms.html#index-0"
>
create_atoms
</a>
</dt>
<dt><a
href=
"create_bonds.html#index-0"
>
create_bonds
</a>
</dt>
<dt><a
href=
"create_box.html#index-0"
>
create_box
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"D"
>
D
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"delete_atoms.html#index-0"
>
delete_atoms
</a>
</dt>
<dt><a
href=
"delete_bonds.html#index-0"
>
delete_bonds
</a>
</dt>
<dt><a
href=
"dielectric.html#index-0"
>
dielectric
</a>
</dt>
<dt><a
href=
"dihedral_coeff.html#index-0"
>
dihedral_coeff
</a>
</dt>
<dt><a
href=
"dihedral_style.html#index-0"
>
dihedral_style
</a>
</dt>
<dt><a
href=
"dihedral_charmm.html#index-0"
>
dihedral_style charmm
</a>
</dt>
<dt><a
href=
"dihedral_class2.html#index-0"
>
dihedral_style class2
</a>
</dt>
<dt><a
href=
"dihedral_cosine_shift_exp.html#index-0"
>
dihedral_style cosine/shift/exp
</a>
</dt>
<dt><a
href=
"dihedral_fourier.html#index-0"
>
dihedral_style fourier
</a>
</dt>
<dt><a
href=
"dihedral_harmonic.html#index-0"
>
dihedral_style harmonic
</a>
</dt>
<dt><a
href=
"dihedral_helix.html#index-0"
>
dihedral_style helix
</a>
</dt>
<dt><a
href=
"dihedral_hybrid.html#index-0"
>
dihedral_style hybrid
</a>
</dt>
<dt><a
href=
"dihedral_multi_harmonic.html#index-0"
>
dihedral_style multi/harmonic
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"dihedral_nharmonic.html#index-0"
>
dihedral_style nharmonic
</a>
</dt>
<dt><a
href=
"dihedral_none.html#index-0"
>
dihedral_style none
</a>
</dt>
<dt><a
href=
"dihedral_opls.html#index-0"
>
dihedral_style opls
</a>
</dt>
<dt><a
href=
"dihedral_quadratic.html#index-0"
>
dihedral_style quadratic
</a>
</dt>
<dt><a
href=
"dihedral_table.html#index-0"
>
dihedral_style table
</a>
</dt>
<dt><a
href=
"dimension.html#index-0"
>
dimension
</a>
</dt>
<dt><a
href=
"displace_atoms.html#index-0"
>
displace_atoms
</a>
</dt>
<dt><a
href=
"dump.html#index-0"
>
dump
</a>
</dt>
<dt><a
href=
"dump_h5md.html#index-0"
>
dump h5md
</a>
</dt>
<dt><a
href=
"dump_image.html#index-0"
>
dump image
</a>
</dt>
<dt><a
href=
"dump_molfile.html#index-0"
>
dump molfile
</a>
</dt>
<dt><a
href=
"dump_modify.html#index-0"
>
dump_modify
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"E"
>
E
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"echo.html#index-0"
>
echo
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"F"
>
F
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"fix.html#index-0"
>
fix
</a>
</dt>
<dt><a
href=
"fix_adapt.html#index-0"
>
fix adapt
</a>
</dt>
<dt><a
href=
"fix_adapt_fep.html#index-0"
>
fix adapt/fep
</a>
</dt>
<dt><a
href=
"fix_addforce.html#index-0"
>
fix addforce
</a>
</dt>
<dt><a
href=
"fix_addtorque.html#index-0"
>
fix addtorque
</a>
</dt>
<dt><a
href=
"fix_append_atoms.html#index-0"
>
fix append/atoms
</a>
</dt>
<dt><a
href=
"fix_atc.html#index-0"
>
fix atc
</a>
</dt>
<dt><a
href=
"fix_atom_swap.html#index-0"
>
fix atom/swap
</a>
</dt>
<dt><a
href=
"fix_ave_atom.html#index-0"
>
fix ave/atom
</a>
</dt>
<dt><a
href=
"fix_ave_chunk.html#index-0"
>
fix ave/chunk
</a>
</dt>
<dt><a
href=
"fix_ave_correlate.html#index-0"
>
fix ave/correlate
</a>
</dt>
<dt><a
href=
"fix_ave_correlate_long.html#index-0"
>
fix ave/correlate/long
</a>
</dt>
<dt><a
href=
"fix_ave_histo.html#index-0"
>
fix ave/histo
</a>
</dt>
<dt><a
href=
"fix_ave_spatial.html#index-0"
>
fix ave/spatial
</a>
</dt>
<dt><a
href=
"fix_ave_spatial_sphere.html#index-0"
>
fix ave/spatial/sphere
</a>
</dt>
<dt><a
href=
"fix_ave_time.html#index-0"
>
fix ave/time
</a>
</dt>
<dt><a
href=
"fix_aveforce.html#index-0"
>
fix aveforce
</a>
</dt>
<dt><a
href=
"fix_balance.html#index-0"
>
fix balance
</a>
</dt>
<dt><a
href=
"fix_bond_break.html#index-0"
>
fix bond/break
</a>
</dt>
<dt><a
href=
"fix_bond_create.html#index-0"
>
fix bond/create
</a>
</dt>
<dt><a
href=
"fix_bond_swap.html#index-0"
>
fix bond/swap
</a>
</dt>
<dt><a
href=
"fix_box_relax.html#index-0"
>
fix box/relax
</a>
</dt>
<dt><a
href=
"fix_colvars.html#index-0"
>
fix colvars
</a>
</dt>
<dt><a
href=
"fix_deform.html#index-0"
>
fix deform
</a>
</dt>
<dt><a
href=
"fix_deposit.html#index-0"
>
fix deposit
</a>
</dt>
<dt><a
href=
"fix_drag.html#index-0"
>
fix drag
</a>
</dt>
<dt><a
href=
"fix_drude.html#index-0"
>
fix drude
</a>
</dt>
<dt><a
href=
"fix_drude_transform.html#index-0"
>
fix drude/transform/direct
</a>
</dt>
<dt><a
href=
"fix_dt_reset.html#index-0"
>
fix dt/reset
</a>
</dt>
<dt><a
href=
"fix_efield.html#index-0"
>
fix efield
</a>
</dt>
<dt><a
href=
"fix_enforce2d.html#index-0"
>
fix enforce2d
</a>
</dt>
<dt><a
href=
"fix_evaporate.html#index-0"
>
fix evaporate
</a>
</dt>
<dt><a
href=
"fix_external.html#index-0"
>
fix external
</a>
</dt>
<dt><a
href=
"fix_freeze.html#index-0"
>
fix freeze
</a>
</dt>
<dt><a
href=
"fix_gcmc.html#index-0"
>
fix gcmc
</a>
</dt>
<dt><a
href=
"fix_gld.html#index-0"
>
fix gld
</a>
</dt>
<dt><a
href=
"fix_gle.html#index-0"
>
fix gle
</a>
</dt>
<dt><a
href=
"fix_gravity.html#index-0"
>
fix gravity
</a>
</dt>
<dt><a
href=
"fix_heat.html#index-0"
>
fix heat
</a>
</dt>
<dt><a
href=
"fix_imd.html#index-0"
>
fix imd
</a>
</dt>
<dt><a
href=
"fix_indent.html#index-0"
>
fix indent
</a>
</dt>
<dt><a
href=
"fix_ipi.html#index-0"
>
fix ipi
</a>
</dt>
<dt><a
href=
"fix_langevin.html#index-0"
>
fix langevin
</a>
</dt>
<dt><a
href=
"fix_langevin_drude.html#index-0"
>
fix langevin/drude
</a>
</dt>
<dt><a
href=
"fix_langevin_eff.html#index-0"
>
fix langevin/eff
</a>
</dt>
<dt><a
href=
"fix_lb_fluid.html#index-0"
>
fix lb/fluid
</a>
</dt>
<dt><a
href=
"fix_lb_momentum.html#index-0"
>
fix lb/momentum
</a>
</dt>
<dt><a
href=
"fix_lb_pc.html#index-0"
>
fix lb/pc
</a>
</dt>
<dt><a
href=
"fix_lb_rigid_pc_sphere.html#index-0"
>
fix lb/rigid/pc/sphere
</a>
</dt>
<dt><a
href=
"fix_lb_viscous.html#index-0"
>
fix lb/viscous
</a>
</dt>
<dt><a
href=
"fix_lineforce.html#index-0"
>
fix lineforce
</a>
</dt>
<dt><a
href=
"fix_meso.html#index-0"
>
fix meso
</a>
</dt>
<dt><a
href=
"fix_meso_stationary.html#index-0"
>
fix meso/stationary
</a>
</dt>
<dt><a
href=
"fix_momentum.html#index-0"
>
fix momentum
</a>
</dt>
<dt><a
href=
"fix_move.html#index-0"
>
fix move
</a>
</dt>
<dt><a
href=
"fix_msst.html#index-0"
>
fix msst
</a>
</dt>
<dt><a
href=
"fix_neb.html#index-0"
>
fix neb
</a>
</dt>
<dt><a
href=
"fix_nph_asphere.html#index-0"
>
fix nph/asphere
</a>
</dt>
<dt><a
href=
"fix_nph_body.html#index-0"
>
fix nph/body
</a>
</dt>
<dt><a
href=
"fix_nph_sphere.html#index-0"
>
fix nph/sphere
</a>
</dt>
<dt><a
href=
"fix_nphug.html#index-0"
>
fix nphug
</a>
</dt>
<dt><a
href=
"fix_npt_asphere.html#index-0"
>
fix npt/asphere
</a>
</dt>
<dt><a
href=
"fix_npt_body.html#index-0"
>
fix npt/body
</a>
</dt>
<dt><a
href=
"fix_npt_sphere.html#index-0"
>
fix npt/sphere
</a>
</dt>
<dt><a
href=
"fix_nve.html#index-0"
>
fix nve
</a>
</dt>
<dt><a
href=
"fix_nve_asphere.html#index-0"
>
fix nve/asphere
</a>
</dt>
<dt><a
href=
"fix_nve_asphere_noforce.html#index-0"
>
fix nve/asphere/noforce
</a>
</dt>
<dt><a
href=
"fix_nve_body.html#index-0"
>
fix nve/body
</a>
</dt>
<dt><a
href=
"fix_nve_eff.html#index-0"
>
fix nve/eff
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"fix_nve_limit.html#index-0"
>
fix nve/limit
</a>
</dt>
<dt><a
href=
"fix_nve_line.html#index-0"
>
fix nve/line
</a>
</dt>
<dt><a
href=
"fix_nve_noforce.html#index-0"
>
fix nve/noforce
</a>
</dt>
<dt><a
href=
"fix_nve_sphere.html#index-0"
>
fix nve/sphere
</a>
</dt>
<dt><a
href=
"fix_nve_tri.html#index-0"
>
fix nve/tri
</a>
</dt>
<dt><a
href=
"fix_nh.html#index-0"
>
fix nvt
</a>
</dt>
<dt><a
href=
"fix_nvt_asphere.html#index-0"
>
fix nvt/asphere
</a>
</dt>
<dt><a
href=
"fix_nvt_body.html#index-0"
>
fix nvt/body
</a>
</dt>
<dt><a
href=
"fix_nh_eff.html#index-0"
>
fix nvt/eff
</a>
</dt>
<dt><a
href=
"fix_nvt_sllod.html#index-0"
>
fix nvt/sllod
</a>
</dt>
<dt><a
href=
"fix_nvt_sllod_eff.html#index-0"
>
fix nvt/sllod/eff
</a>
</dt>
<dt><a
href=
"fix_nvt_sphere.html#index-0"
>
fix nvt/sphere
</a>
</dt>
<dt><a
href=
"fix_oneway.html#index-0"
>
fix oneway
</a>
</dt>
<dt><a
href=
"fix_orient_fcc.html#index-0"
>
fix orient/fcc
</a>
</dt>
<dt><a
href=
"fix_phonon.html#index-0"
>
fix phonon
</a>
</dt>
<dt><a
href=
"fix_pimd.html#index-0"
>
fix pimd
</a>
</dt>
<dt><a
href=
"fix_planeforce.html#index-0"
>
fix planeforce
</a>
</dt>
<dt><a
href=
"fix_pour.html#index-0"
>
fix pour
</a>
</dt>
<dt><a
href=
"fix_press_berendsen.html#index-0"
>
fix press/berendsen
</a>
</dt>
<dt><a
href=
"fix_print.html#index-0"
>
fix print
</a>
</dt>
<dt><a
href=
"fix_property_atom.html#index-0"
>
fix property/atom
</a>
</dt>
<dt><a
href=
"fix_qbmsst.html#index-0"
>
fix qbmsst
</a>
</dt>
<dt><a
href=
"fix_qeq_comb.html#index-0"
>
fix qeq/comb
</a>
</dt>
<dt><a
href=
"fix_qeq.html#index-0"
>
fix qeq/point
</a>
</dt>
<dt><a
href=
"fix_qeq_reax.html#index-0"
>
fix qeq/reax
</a>
</dt>
<dt><a
href=
"fix_qmmm.html#index-0"
>
fix qmmm
</a>
</dt>
<dt><a
href=
"fix_qtb.html#index-0"
>
fix qtb
</a>
</dt>
<dt><a
href=
"fix_reax_bonds.html#index-0"
>
fix reax/bonds
</a>
</dt>
<dt><a
href=
"fix_reaxc_species.html#index-0"
>
fix reax/c/species
</a>
</dt>
<dt><a
href=
"fix_recenter.html#index-0"
>
fix recenter
</a>
</dt>
<dt><a
href=
"fix_restrain.html#index-0"
>
fix restrain
</a>
</dt>
<dt><a
href=
"fix_rigid.html#index-0"
>
fix rigid
</a>
</dt>
<dt><a
href=
"fix_saed_vtk.html#index-0"
>
fix saed/vtk
</a>
</dt>
<dt><a
href=
"fix_setforce.html#index-0"
>
fix setforce
</a>
</dt>
<dt><a
href=
"fix_shake.html#index-0"
>
fix shake
</a>
</dt>
<dt><a
href=
"fix_smd.html#index-0"
>
fix smd
</a>
</dt>
<dt><a
href=
"fix_smd_adjust_dt.html#index-0"
>
fix smd/adjust_dt
</a>
</dt>
<dt><a
href=
"fix_smd_integrate_tlsph.html#index-0"
>
fix smd/integrate_tlsph
</a>
</dt>
<dt><a
href=
"fix_smd_integrate_ulsph.html#index-0"
>
fix smd/integrate_ulsph
</a>
</dt>
<dt><a
href=
"fix_smd_move_triangulated_surface.html#index-0"
>
fix smd/move_tri_surf
</a>
</dt>
<dt><a
href=
"fix_smd_setvel.html#index-0"
>
fix smd/setvel
</a>
</dt>
<dt><a
href=
"fix_smd_wall_surface.html#index-0"
>
fix smd/wall_surface
</a>
</dt>
<dt><a
href=
"fix_spring.html#index-0"
>
fix spring
</a>
</dt>
<dt><a
href=
"fix_spring_rg.html#index-0"
>
fix spring/rg
</a>
</dt>
<dt><a
href=
"fix_spring_self.html#index-0"
>
fix spring/self
</a>
</dt>
<dt><a
href=
"fix_srd.html#index-0"
>
fix srd
</a>
</dt>
<dt><a
href=
"fix_store_force.html#index-0"
>
fix store/force
</a>
</dt>
<dt><a
href=
"fix_store_state.html#index-0"
>
fix store/state
</a>
</dt>
<dt><a
href=
"fix_temp_berendsen.html#index-0"
>
fix temp/berendsen
</a>
</dt>
<dt><a
href=
"fix_temp_csvr.html#index-0"
>
fix temp/csvr
</a>
</dt>
<dt><a
href=
"fix_temp_rescale.html#index-0"
>
fix temp/rescale
</a>
</dt>
<dt><a
href=
"fix_temp_rescale_eff.html#index-0"
>
fix temp/rescale/eff
</a>
</dt>
<dt><a
href=
"fix_tfmc.html#index-0"
>
fix tfmc
</a>
</dt>
<dt><a
href=
"fix_thermal_conductivity.html#index-0"
>
fix thermal/conductivity
</a>
</dt>
<dt><a
href=
"fix_ti_rs.html#index-0"
>
fix ti/rs
</a>
</dt>
<dt><a
href=
"fix_ti_spring.html#index-0"
>
fix ti/spring
</a>
</dt>
<dt><a
href=
"fix_tmd.html#index-0"
>
fix tmd
</a>
</dt>
<dt><a
href=
"fix_ttm.html#index-0"
>
fix ttm
</a>
</dt>
<dt><a
href=
"fix_tune_kspace.html#index-0"
>
fix tune/kspace
</a>
</dt>
<dt><a
href=
"fix_vector.html#index-0"
>
fix vector
</a>
</dt>
<dt><a
href=
"fix_viscosity.html#index-0"
>
fix viscosity
</a>
</dt>
<dt><a
href=
"fix_viscous.html#index-0"
>
fix viscous
</a>
</dt>
<dt><a
href=
"fix_wall_gran.html#index-0"
>
fix wall/gran
</a>
</dt>
<dt><a
href=
"fix_wall.html#index-0"
>
fix wall/lj93
</a>
</dt>
<dt><a
href=
"fix_wall_piston.html#index-0"
>
fix wall/piston
</a>
</dt>
<dt><a
href=
"fix_wall_reflect.html#index-0"
>
fix wall/reflect
</a>
</dt>
<dt><a
href=
"fix_wall_region.html#index-0"
>
fix wall/region
</a>
</dt>
<dt><a
href=
"fix_wall_srd.html#index-0"
>
fix wall/srd
</a>
</dt>
<dt><a
href=
"fix_modify.html#index-0"
>
fix_modify
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"G"
>
G
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"group.html#index-0"
>
group
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"group2ndx.html#index-0"
>
group2ndx
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"I"
>
I
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"if.html#index-0"
>
if
</a>
</dt>
<dt><a
href=
"improper_coeff.html#index-0"
>
improper_coeff
</a>
</dt>
<dt><a
href=
"improper_style.html#index-0"
>
improper_style
</a>
</dt>
<dt><a
href=
"improper_class2.html#index-0"
>
improper_style class2
</a>
</dt>
<dt><a
href=
"improper_cossq.html#index-0"
>
improper_style cossq
</a>
</dt>
<dt><a
href=
"improper_cvff.html#index-0"
>
improper_style cvff
</a>
</dt>
<dt><a
href=
"improper_distance.html#index-0"
>
improper_style distance
</a>
</dt>
<dt><a
href=
"improper_fourier.html#index-0"
>
improper_style fourier
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"improper_harmonic.html#index-0"
>
improper_style harmonic
</a>
</dt>
<dt><a
href=
"improper_hybrid.html#index-0"
>
improper_style hybrid
</a>
</dt>
<dt><a
href=
"improper_none.html#index-0"
>
improper_style none
</a>
</dt>
<dt><a
href=
"improper_ring.html#index-0"
>
improper_style ring
</a>
</dt>
<dt><a
href=
"improper_umbrella.html#index-0"
>
improper_style umbrella
</a>
</dt>
<dt><a
href=
"include.html#index-0"
>
include
</a>
</dt>
<dt><a
href=
"info.html#index-0"
>
info
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"J"
>
J
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"jump.html#index-0"
>
jump
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"K"
>
K
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"kspace_modify.html#index-0"
>
kspace_modify
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"kspace_style.html#index-0"
>
kspace_style
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"L"
>
L
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"label.html#index-0"
>
label
</a>
</dt>
<dt><a
href=
"lattice.html#index-0"
>
lattice
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"log.html#index-0"
>
log
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"M"
>
M
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"mass.html#index-0"
>
mass
</a>
</dt>
<dt><a
href=
"min_modify.html#index-0"
>
min_modify
</a>
</dt>
<dt><a
href=
"min_style.html#index-0"
>
min_style
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"minimize.html#index-0"
>
minimize
</a>
</dt>
<dt><a
href=
"molecule.html#index-0"
>
molecule
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"N"
>
N
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"neb.html#index-0"
>
neb
</a>
</dt>
<dt><a
href=
"neigh_modify.html#index-0"
>
neigh_modify
</a>
</dt>
<dt><a
href=
"neighbor.html#index-0"
>
neighbor
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"newton.html#index-0"
>
newton
</a>
</dt>
<dt><a
href=
"next.html#index-0"
>
next
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"P"
>
P
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"package.html#index-0"
>
package
</a>
</dt>
<dt><a
href=
"pair_coeff.html#index-0"
>
pair_coeff
</a>
</dt>
<dt><a
href=
"pair_modify.html#index-0"
>
pair_modify
</a>
</dt>
<dt><a
href=
"pair_style.html#index-0"
>
pair_style
</a>
</dt>
<dt><a
href=
"pair_adp.html#index-0"
>
pair_style adp
</a>
</dt>
<dt><a
href=
"pair_airebo.html#index-0"
>
pair_style airebo
</a>
</dt>
<dt><a
href=
"pair_awpmd.html#index-0"
>
pair_style awpmd/cut
</a>
</dt>
<dt><a
href=
"pair_beck.html#index-0"
>
pair_style beck
</a>
</dt>
<dt><a
href=
"pair_body.html#index-0"
>
pair_style body
</a>
</dt>
<dt><a
href=
"pair_body_rounded_polygon.html#index-0"
>
pair_style body/rounded/polygon
</a>
</dt>
<dt><a
href=
"pair_bop.html#index-0"
>
pair_style bop
</a>
</dt>
<dt><a
href=
"pair_born.html#index-0"
>
pair_style born
</a>
</dt>
<dt><a
href=
"pair_cs.html#index-0"
>
pair_style born/coul/long/cs
</a>
</dt>
<dt><a
href=
"pair_brownian.html#index-0"
>
pair_style brownian
</a>
</dt>
<dt><a
href=
"pair_buck.html#index-0"
>
pair_style buck
</a>
</dt>
<dt><a
href=
"pair_buck_long.html#index-0"
>
pair_style buck/long/coul/long
</a>
</dt>
<dt><a
href=
"pair_colloid.html#index-0"
>
pair_style colloid
</a>
</dt>
<dt><a
href=
"pair_comb.html#index-0"
>
pair_style comb
</a>
</dt>
<dt><a
href=
"pair_coul.html#index-0"
>
pair_style coul/cut
</a>
</dt>
<dt><a
href=
"pair_coul_diel.html#index-0"
>
pair_style coul/diel
</a>
</dt>
<dt><a
href=
"pair_dpd.html#index-0"
>
pair_style dpd
</a>
</dt>
<dt><a
href=
"pair_dsmc.html#index-0"
>
pair_style dsmc
</a>
</dt>
<dt><a
href=
"pair_eam.html#index-0"
>
pair_style eam
</a>
</dt>
<dt><a
href=
"pair_edip.html#index-0"
>
pair_style edip
</a>
</dt>
<dt><a
href=
"pair_eff.html#index-0"
>
pair_style eff/cut
</a>
</dt>
<dt><a
href=
"pair_eim.html#index-0"
>
pair_style eim
</a>
</dt>
<dt><a
href=
"pair_gauss.html#index-0"
>
pair_style gauss
</a>
</dt>
<dt><a
href=
"pair_gayberne.html#index-0"
>
pair_style gayberne
</a>
</dt>
<dt><a
href=
"pair_gran.html#index-0"
>
pair_style gran/hooke
</a>
</dt>
<dt><a
href=
"pair_hbond_dreiding.html#index-0"
>
pair_style hbond/dreiding/lj
</a>
</dt>
<dt><a
href=
"pair_hybrid.html#index-0"
>
pair_style hybrid
</a>
</dt>
<dt><a
href=
"pair_kim.html#index-0"
>
pair_style kim
</a>
</dt>
<dt><a
href=
"pair_lcbop.html#index-0"
>
pair_style lcbop
</a>
</dt>
<dt><a
href=
"pair_line_lj.html#index-0"
>
pair_style line/lj
</a>
</dt>
<dt><a
href=
"pair_list.html#index-0"
>
pair_style list
</a>
</dt>
<dt><a
href=
"pair_charmm.html#index-0"
>
pair_style lj/charmm/coul/charmm
</a>
</dt>
<dt><a
href=
"pair_class2.html#index-0"
>
pair_style lj/class2
</a>
</dt>
<dt><a
href=
"pair_lj_cubic.html#index-0"
>
pair_style lj/cubic
</a>
</dt>
<dt><a
href=
"pair_lj.html#index-0"
>
pair_style lj/cut
</a>
</dt>
<dt><a
href=
"pair_dipole.html#index-0"
>
pair_style lj/cut/dipole/cut
</a>
</dt>
<dt><a
href=
"pair_lj_soft.html#index-0"
>
pair_style lj/cut/soft
</a>
</dt>
<dt><a
href=
"pair_lj_expand.html#index-0"
>
pair_style lj/expand
</a>
</dt>
<dt><a
href=
"pair_gromacs.html#index-0"
>
pair_style lj/gromacs
</a>
</dt>
<dt><a
href=
"pair_lj_long.html#index-0"
>
pair_style lj/long/coul/long
</a>
</dt>
<dt><a
href=
"pair_mdf.html#index-0"
>
pair_style lj/mdf
</a>
</dt>
<dt><a
href=
"pair_sdk.html#index-0"
>
pair_style lj/sdk
</a>
</dt>
<dt><a
href=
"pair_lj_sf.html#index-0"
>
pair_style lj/sf
</a>
</dt>
<dt><a
href=
"pair_lj_smooth.html#index-0"
>
pair_style lj/smooth
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"pair_lj_smooth_linear.html#index-0"
>
pair_style lj/smooth/linear
</a>
</dt>
<dt><a
href=
"pair_lj96.html#index-0"
>
pair_style lj96/cut
</a>
</dt>
<dt><a
href=
"pair_lubricate.html#index-0"
>
pair_style lubricate
</a>
</dt>
<dt><a
href=
"pair_lubricateU.html#index-0"
>
pair_style lubricateU
</a>
</dt>
<dt><a
href=
"pair_meam.html#index-0"
>
pair_style meam
</a>
</dt>
<dt><a
href=
"pair_mgpt.html#index-0"
>
pair_style mgpt
</a>
</dt>
<dt><a
href=
"pair_mie.html#index-0"
>
pair_style mie/cut
</a>
</dt>
<dt><a
href=
"pair_morse.html#index-0"
>
pair_style morse
</a>
</dt>
<dt><a
href=
"pair_nb3b_harmonic.html#index-0"
>
pair_style nb3b/harmonic
</a>
</dt>
<dt><a
href=
"pair_nm.html#index-0"
>
pair_style nm/cut
</a>
</dt>
<dt><a
href=
"pair_none.html#index-0"
>
pair_style none
</a>
</dt>
<dt><a
href=
"pair_peri.html#index-0"
>
pair_style peri/pmb
</a>
</dt>
<dt><a
href=
"pair_polymorphic.html#index-0"
>
pair_style polymorphic
</a>
</dt>
<dt><a
href=
"pair_quip.html#index-0"
>
pair_style quip
</a>
</dt>
<dt><a
href=
"pair_reax.html#index-0"
>
pair_style reax
</a>
</dt>
<dt><a
href=
"pair_reax_c.html#index-0"
>
pair_style reax/c
</a>
</dt>
<dt><a
href=
"pair_resquared.html#index-0"
>
pair_style resquared
</a>
</dt>
<dt><a
href=
"pair_smd_hertz.html#index-0"
>
pair_style smd/hertz
</a>
</dt>
<dt><a
href=
"pair_smd_tlsph.html#index-0"
>
pair_style smd/tlsph
</a>
</dt>
<dt><a
href=
"pair_smd_triangulated_surface.html#index-0"
>
pair_style smd/tri_surface
</a>
</dt>
<dt><a
href=
"pair_smd_ulsph.html#index-0"
>
pair_style smd/ulsph
</a>
</dt>
<dt><a
href=
"pair_smtbq.html#index-0"
>
pair_style smtbq
</a>
</dt>
<dt><a
href=
"pair_snap.html#index-0"
>
pair_style snap
</a>
</dt>
<dt><a
href=
"pair_soft.html#index-0"
>
pair_style soft
</a>
</dt>
<dt><a
href=
"pair_sph_heatconduction.html#index-0"
>
pair_style sph/heatconduction
</a>
</dt>
<dt><a
href=
"pair_sph_idealgas.html#index-0"
>
pair_style sph/idealgas
</a>
</dt>
<dt><a
href=
"pair_sph_lj.html#index-0"
>
pair_style sph/lj
</a>
</dt>
<dt><a
href=
"pair_sph_rhosum.html#index-0"
>
pair_style sph/rhosum
</a>
</dt>
<dt><a
href=
"pair_sph_taitwater.html#index-0"
>
pair_style sph/taitwater
</a>
</dt>
<dt><a
href=
"pair_sph_taitwater_morris.html#index-0"
>
pair_style sph/taitwater/morris
</a>
</dt>
<dt><a
href=
"pair_srp.html#index-0"
>
pair_style srp
</a>
</dt>
<dt><a
href=
"pair_sw.html#index-0"
>
pair_style sw
</a>
</dt>
<dt><a
href=
"pair_table.html#index-0"
>
pair_style table
</a>
</dt>
<dt><a
href=
"pair_tersoff.html#index-0"
>
pair_style tersoff
</a>
</dt>
<dt><a
href=
"pair_tersoff_mod.html#index-0"
>
pair_style tersoff/mod
</a>
</dt>
<dt><a
href=
"pair_tersoff_zbl.html#index-0"
>
pair_style tersoff/zbl
</a>
</dt>
<dt><a
href=
"pair_thole.html#index-0"
>
pair_style thole
</a>
</dt>
<dt><a
href=
"pair_tri_lj.html#index-0"
>
pair_style tri/lj
</a>
</dt>
<dt><a
href=
"pair_vashishta.html#index-0"
>
pair_style vashishta
</a>
</dt>
<dt><a
href=
"pair_yukawa.html#index-0"
>
pair_style yukawa
</a>
</dt>
<dt><a
href=
"pair_yukawa_colloid.html#index-0"
>
pair_style yukawa/colloid
</a>
</dt>
<dt><a
href=
"pair_zbl.html#index-0"
>
pair_style zbl
</a>
</dt>
<dt><a
href=
"pair_write.html#index-0"
>
pair_write
</a>
</dt>
<dt><a
href=
"partition.html#index-0"
>
partition
</a>
</dt>
<dt><a
href=
"prd.html#index-0"
>
prd
</a>
</dt>
<dt><a
href=
"print.html#index-0"
>
print
</a>
</dt>
<dt><a
href=
"processors.html#index-0"
>
processors
</a>
</dt>
<dt><a
href=
"python.html#index-0"
>
python
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"Q"
>
Q
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"quit.html#index-0"
>
quit
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"R"
>
R
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"read_data.html#index-0"
>
read_data
</a>
</dt>
<dt><a
href=
"read_dump.html#index-0"
>
read_dump
</a>
</dt>
<dt><a
href=
"read_restart.html#index-0"
>
read_restart
</a>
</dt>
<dt><a
href=
"region.html#index-0"
>
region
</a>
</dt>
<dt><a
href=
"replicate.html#index-0"
>
replicate
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"rerun.html#index-0"
>
rerun
</a>
</dt>
<dt><a
href=
"reset_timestep.html#index-0"
>
reset_timestep
</a>
</dt>
<dt><a
href=
"restart.html#index-0"
>
restart
</a>
</dt>
<dt><a
href=
"run.html#index-0"
>
run
</a>
</dt>
<dt><a
href=
"run_style.html#index-0"
>
run_style
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"S"
>
S
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"set.html#index-0"
>
set
</a>
</dt>
<dt><a
href=
"shell.html#index-0"
>
shell
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"special_bonds.html#index-0"
>
special_bonds
</a>
</dt>
<dt><a
href=
"suffix.html#index-0"
>
suffix
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"T"
>
T
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"tad.html#index-0"
>
tad
</a>
</dt>
<dt><a
href=
"temper.html#index-0"
>
temper
</a>
</dt>
<dt><a
href=
"thermo.html#index-0"
>
thermo
</a>
</dt>
<dt><a
href=
"thermo_modify.html#index-0"
>
thermo_modify
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"thermo_style.html#index-0"
>
thermo_style
</a>
</dt>
<dt><a
href=
"timer.html#index-0"
>
timer
</a>
</dt>
<dt><a
href=
"timestep.html#index-0"
>
timestep
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"U"
>
U
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"uncompute.html#index-0"
>
uncompute
</a>
</dt>
<dt><a
href=
"undump.html#index-0"
>
undump
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"unfix.html#index-0"
>
unfix
</a>
</dt>
<dt><a
href=
"units.html#index-0"
>
units
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"V"
>
V
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"variable.html#index-0"
>
variable
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"velocity.html#index-0"
>
velocity
</a>
</dt>
</dl></td>
</tr></table>
<h2
id=
"W"
>
W
</h2>
<table
style=
"width: 100%"
class=
"indextable genindextable"
><tr>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"write_data.html#index-0"
>
write_data
</a>
</dt>
<dt><a
href=
"write_dump.html#index-0"
>
write_dump
</a>
</dt>
</dl></td>
<td
style=
"width: 33%"
valign=
"top"
><dl>
<dt><a
href=
"write_restart.html#index-0"
>
write_restart
</a>
</dt>
</dl></td>
</tr></table>
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