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<li class="navelem"><b>voro</b></li><li class="navelem"><a class="el" href="classvoro_1_1pre__container__poly.html">pre_container_poly</a></li> </ul>
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<p>A class for storing an arbitrary number of particles with radius information, prior to setting up a container geometry.
<a href="classvoro_1_1pre__container__poly.html#details">More...</a></p>
<p><code>#include &lt;<a class="el" href="pre__container_8hh_source.html">pre_container.hh</a>&gt;</code></p>
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<img id="dynsection-0-trigger" src="closed.png" alt="+"/> Inheritance diagram for voro::pre_container_poly:</div>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a80a9be51f0cd441544ea5c7a59002e19"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__poly.html#a80a9be51f0cd441544ea5c7a59002e19">pre_container_poly</a> (double ax_, double bx_, double ay_, double by_, double az_, double bz_, bool xperiodic_, bool yperiodic_, bool zperiodic_)</td></tr>
<tr class="memitem:abc5d9009deec44c1f5fc88e4da10e89a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__poly.html#abc5d9009deec44c1f5fc88e4da10e89a">put</a> (int n, double x, double y, double z, double r)</td></tr>
<tr class="memitem:aa6aab61ad68e90a513e53433313c2a4a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__poly.html#aa6aab61ad68e90a513e53433313c2a4a">import</a> (FILE *fp=stdin)</td></tr>
<tr class="memitem:aa78a3577ba7d11c65f5941e22638f015"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__poly.html#aa78a3577ba7d11c65f5941e22638f015">import</a> (const char *filename)</td></tr>
<tr class="memitem:ac71c0ee24182a115ce79da4cc91ee356"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__poly.html#ac71c0ee24182a115ce79da4cc91ee356">setup</a> (<a class="el" href="classvoro_1_1container__poly.html">container_poly</a> &amp;con)</td></tr>
<tr class="memitem:ac18d16204c7769ec554d14f84b6517f0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__poly.html#ac18d16204c7769ec554d14f84b6517f0">setup</a> (<a class="el" href="classvoro_1_1particle__order.html">particle_order</a> &amp;vo, <a class="el" href="classvoro_1_1container__poly.html">container_poly</a> &amp;con)</td></tr>
<tr class="inherit_header pub_methods_classvoro_1_1pre__container__base"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classvoro_1_1pre__container__base')"><img src="closed.png" alt="-"/>&nbsp;Public Member Functions inherited from <a class="el" href="classvoro_1_1pre__container__base.html">voro::pre_container_base</a></td></tr>
<tr class="memitem:a8e1fcadbeedc63f205a36c2fa9333ab6 inherit pub_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a8e1fcadbeedc63f205a36c2fa9333ab6">guess_optimal</a> (int &amp;nx, int &amp;ny, int &amp;nz)</td></tr>
<tr class="memitem:a522bd57b4a0e4af6b197c04d103adc68 inherit pub_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a522bd57b4a0e4af6b197c04d103adc68">pre_container_base</a> (double ax_, double bx_, double ay_, double by_, double az_, double bz_, bool xperiodic_, bool yperiodic_, bool zperiodic_, int ps_)</td></tr>
<tr class="memitem:a9832a92c7e6dbc2959ab958ea821ca9a inherit pub_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a9832a92c7e6dbc2959ab958ea821ca9a">~pre_container_base</a> ()</td></tr>
<tr class="memitem:a253ea1bdfa1b82c3fb0ab12f1685d695 inherit pub_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a253ea1bdfa1b82c3fb0ab12f1685d695">total_particles</a> ()</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_attribs_classvoro_1_1pre__container__base"><td colspan="2" onclick="javascript:toggleInherit('pub_attribs_classvoro_1_1pre__container__base')"><img src="closed.png" alt="-"/>&nbsp;Data Fields inherited from <a class="el" href="classvoro_1_1pre__container__base.html">voro::pre_container_base</a></td></tr>
<tr class="memitem:a7ffde3944d0899b6ae9abe42e6567789 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a7ffde3944d0899b6ae9abe42e6567789">ax</a></td></tr>
<tr class="memitem:a34dfa63f38cf870b32004e12558463a0 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a34dfa63f38cf870b32004e12558463a0">bx</a></td></tr>
<tr class="memitem:a397c0ae141594e1868eb6248a6d57d52 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a397c0ae141594e1868eb6248a6d57d52">ay</a></td></tr>
<tr class="memitem:a6acac844ab71a02ea6a990fccdbd5c59 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a6acac844ab71a02ea6a990fccdbd5c59">by</a></td></tr>
<tr class="memitem:a68952c93198e0623604a049aa4140d52 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a68952c93198e0623604a049aa4140d52">az</a></td></tr>
<tr class="memitem:a9049eaba232b13aa3a9562dffa57bc24 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a9049eaba232b13aa3a9562dffa57bc24">bz</a></td></tr>
<tr class="memitem:aa7cffdaee881f941e421d0e9e3f38db3 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#aa7cffdaee881f941e421d0e9e3f38db3">xperiodic</a></td></tr>
<tr class="memitem:aa86a0e8ac0bafbc2bf2fefbafce005be inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#aa86a0e8ac0bafbc2bf2fefbafce005be">yperiodic</a></td></tr>
<tr class="memitem:a5df09b1ba1e3fe49c3efba11ed44efb2 inherit pub_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a5df09b1ba1e3fe49c3efba11ed44efb2">zperiodic</a></td></tr>
<tr class="inherit_header pro_methods_classvoro_1_1pre__container__base"><td colspan="2" onclick="javascript:toggleInherit('pro_methods_classvoro_1_1pre__container__base')"><img src="closed.png" alt="-"/>&nbsp;Protected Member Functions inherited from <a class="el" href="classvoro_1_1pre__container__base.html">voro::pre_container_base</a></td></tr>
<tr class="memitem:a3b9e5b59a4fd8477321d9412feffac4f inherit pro_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a3b9e5b59a4fd8477321d9412feffac4f">new_chunk</a> ()</td></tr>
<tr class="memitem:abc281e0f5b042046451b1d86ee94880d inherit pro_methods_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#abc281e0f5b042046451b1d86ee94880d">extend_chunk_index</a> ()</td></tr>
<tr class="inherit_header pro_attribs_classvoro_1_1pre__container__base"><td colspan="2" onclick="javascript:toggleInherit('pro_attribs_classvoro_1_1pre__container__base')"><img src="closed.png" alt="-"/>&nbsp;Protected Attributes inherited from <a class="el" href="classvoro_1_1pre__container__base.html">voro::pre_container_base</a></td></tr>
<tr class="memitem:a4a3ff1d6bee289e53f5015327384444a inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">const int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a4a3ff1d6bee289e53f5015327384444a">ps</a></td></tr>
<tr class="memitem:a9ae49ab1c51dc851e7ddf3035b719a6b inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a9ae49ab1c51dc851e7ddf3035b719a6b">index_sz</a></td></tr>
<tr class="memitem:a927440d3390000b94cce98733d81811c inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a927440d3390000b94cce98733d81811c">pre_id</a></td></tr>
<tr class="memitem:a687bc9acac994d7918e1e34c27df68e3 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a687bc9acac994d7918e1e34c27df68e3">end_id</a></td></tr>
<tr class="memitem:a49cb1c584f78ac8fdce353fd2f43b5f6 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a49cb1c584f78ac8fdce353fd2f43b5f6">l_id</a></td></tr>
<tr class="memitem:a432897c62a5d0c1acc39a97ffe27b506 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a432897c62a5d0c1acc39a97ffe27b506">ch_id</a></td></tr>
<tr class="memitem:a73bcad154008325e074bea734fc4125b inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">int *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a73bcad154008325e074bea734fc4125b">e_id</a></td></tr>
<tr class="memitem:a8f3fadf0d9d115fec92eedbcb2c5af9c inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">double **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#a8f3fadf0d9d115fec92eedbcb2c5af9c">pre_p</a></td></tr>
<tr class="memitem:ae4dc10b744019a92efffbcc1ece189e4 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">double **&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#ae4dc10b744019a92efffbcc1ece189e4">end_p</a></td></tr>
<tr class="memitem:abe6c99e9fa26d0764014c5f2913ed6c9 inherit pro_attribs_classvoro_1_1pre__container__base"><td class="memItemLeft" align="right" valign="top">double *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classvoro_1_1pre__container__base.html#abe6c99e9fa26d0764014c5f2913ed6c9">ch_p</a></td></tr>
</table>
<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>The <a class="el" href="classvoro_1_1pre__container__poly.html" title="A class for storing an arbitrary number of particles with radius information, prior to setting up a c...">pre_container_poly</a> class is an extension of the <a class="el" href="classvoro_1_1pre__container__base.html" title="A class for storing an arbitrary number of particles, prior to setting up a container geometry...">pre_container_base</a> class for cases when particle radius information is available. </p>
<p>Definition at line <a class="el" href="pre__container_8hh_source.html#l00133">133</a> of file <a class="el" href="pre__container_8hh_source.html">pre_container.hh</a>.</p>
</div><hr/><h2>Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="a80a9be51f0cd441544ea5c7a59002e19"></a>
<div class="memitem">
<div class="memproto">
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<td class="memname">voro::pre_container_poly::pre_container_poly </td>
<td>(</td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>ax_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>bx_</em>, </td>
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<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>ay_</em>, </td>
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<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>by_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>az_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">double&#160;</td>
<td class="paramname"><em>bz_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool&#160;</td>
<td class="paramname"><em>xperiodic_</em>, </td>
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<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool&#160;</td>
<td class="paramname"><em>yperiodic_</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">bool&#160;</td>
<td class="paramname"><em>zperiodic_</em>&#160;</td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
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</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span> </td>
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</table>
</div><div class="memdoc">
<p>The class constructor sets up the geometry of container, initializing the minimum and maximum coordinates in each direction. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">(ax_,bx_)</td><td>the minimum and maximum x coordinates. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">(ay_,by_)</td><td>the minimum and maximum y coordinates. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">(az_,bz_)</td><td>the minimum and maximum z coordinates. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">(xperiodic_,yperiodic_,zperiodic_</td><td>) flags setting whether the container is periodic in each coordinate direction. </td></tr>
</table>
</dd>
</dl>
<p>Definition at line <a class="el" href="pre__container_8hh_source.html#l00144">144</a> of file <a class="el" href="pre__container_8hh_source.html">pre_container.hh</a>.</p>
</div>
</div>
<hr/><h2>Member Function Documentation</h2>
<a class="anchor" id="aa6aab61ad68e90a513e53433313c2a4a"></a>
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<td class="memname">void voro::pre_container_poly::import </td>
<td>(</td>
<td class="paramtype">FILE *&#160;</td>
<td class="paramname"><em>fp</em> = <code>stdin</code></td><td>)</td>
<td></td>
</tr>
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</div><div class="memdoc">
<p>Import a list of particles from an open file stream, also storing the order of that the particles are read. Entries of four numbers (Particle ID, x position, y position, z position) are searched for. If the file cannot be successfully read, then the routine causes a fatal error. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">fp</td><td>the file handle to read from. </td></tr>
</table>
</dd>
</dl>
<p>Definition at line <a class="el" href="pre__container_8cc_source.html#l00202">202</a> of file <a class="el" href="pre__container_8cc_source.html">pre_container.cc</a>.</p>
</div>
</div>
<a class="anchor" id="aa78a3577ba7d11c65f5941e22638f015"></a>
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<td class="memname">void voro::pre_container_poly::import </td>
<td>(</td>
<td class="paramtype">const char *&#160;</td>
<td class="paramname"><em>filename</em></td><td>)</td>
<td></td>
</tr>
</table>
</td>
<td class="mlabels-right">
<span class="mlabels"><span class="mlabel">inline</span></span> </td>
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<p>Imports particles from a file. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">filename</td><td>the name of the file to read from. </td></tr>
</table>
</dd>
</dl>
<p>Definition at line <a class="el" href="pre__container_8hh_source.html#l00151">151</a> of file <a class="el" href="pre__container_8hh_source.html">pre_container.hh</a>.</p>
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<td class="memname">void voro::pre_container_poly::put </td>
<td>(</td>
<td class="paramtype">int&#160;</td>
<td class="paramname"><em>n</em>, </td>
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<td class="paramtype">double&#160;</td>
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<td class="paramtype">double&#160;</td>
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<td class="paramtype">double&#160;</td>
<td class="paramname"><em>z</em>, </td>
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<td class="paramtype">double&#160;</td>
<td class="paramname"><em>r</em>&#160;</td>
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<p>Stores a particle ID and position, allocating a new memory chunk if necessary. </p>
<dl class="params"><dt>Parameters:</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">n</td><td>the numerical ID of the inserted particle. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">(x,y,z)</td><td>the position vector of the inserted particle. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">r</td><td>the radius of the particle. </td></tr>
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<p>Definition at line <a class="el" href="pre__container_8cc_source.html#l00086">86</a> of file <a class="el" href="pre__container_8cc_source.html">pre_container.cc</a>.</p>
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<td class="memname">void voro::pre_container_poly::setup </td>
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<td class="paramtype"><a class="el" href="classvoro_1_1container__poly.html">container_poly</a> &amp;&#160;</td>
<td class="paramname"><em>con</em></td><td>)</td>
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<p>Transfers the particles stored within the class to a <a class="el" href="classvoro_1_1container__poly.html" title="Extension of the container_base class for computing radical Voronoi tessellations.">container_poly</a> class. </p>
<dl class="params"><dt>Parameters:</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">con</td><td>the <a class="el" href="classvoro_1_1container__poly.html" title="Extension of the container_base class for computing radical Voronoi tessellations.">container_poly</a> class to transfer to. </td></tr>
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<p>Definition at line <a class="el" href="pre__container_8cc_source.html#l00120">120</a> of file <a class="el" href="pre__container_8cc_source.html">pre_container.cc</a>.</p>
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<td class="memname">void voro::pre_container_poly::setup </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classvoro_1_1particle__order.html">particle_order</a> &amp;&#160;</td>
<td class="paramname"><em>vo</em>, </td>
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<td class="paramname"><em>con</em>&#160;</td>
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<p>Transfers the particles stored within the class to a <a class="el" href="classvoro_1_1container__poly.html" title="Extension of the container_base class for computing radical Voronoi tessellations.">container_poly</a> class, also recording the order in which particles were stored. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">vo</td><td>the ordering class to use. </td></tr>
<tr><td class="paramdir">[in]</td><td class="paramname">con</td><td>the <a class="el" href="classvoro_1_1container__poly.html" title="Extension of the container_base class for computing radical Voronoi tessellations.">container_poly</a> class to transfer to. </td></tr>
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<p>Definition at line <a class="el" href="pre__container_8cc_source.html#l00166">166</a> of file <a class="el" href="pre__container_8cc_source.html">pre_container.cc</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
<li><a class="el" href="pre__container_8hh_source.html">pre_container.hh</a></li>
<li><a class="el" href="pre__container_8cc_source.html">pre_container.cc</a></li>
</ul>
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