Graphefficient_neuronet
Graph
efficient_neuronet
History Graph
History Graph
Commit | Author | Details | Committed | ||||
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797c6dc2dd27 | Axel Kohlmeyer | remove upper limit for weigh factor on neighbor list and time weights | Aug 7 2016 | ||||
5405622f3bda | Axel Kohlmeyer | add new imbalance module store, which allows to store weights in an atom… | Aug 7 2016 | ||||
280aef55d2b7 | Axel Kohlmeyer | convert from using fix property/atom to using fix store | Aug 7 2016 | ||||
b3bd35c7beef | Axel Kohlmeyer | whitespace cleanup | Aug 7 2016 | ||||
fcba14a0aa97 | Axel Kohlmeyer | properly handle the case of neighbor lists never been computed before | Aug 6 2016 | ||||
c00aa3c600c0 | Axel Kohlmeyer | plug small memory leak | Aug 6 2016 | ||||
529417f86c4d | Axel Kohlmeyer | simplify and correct logic to pass weight to balancer algorithms | Aug 6 2016 | ||||
6a519e5eefb5 | Axel Kohlmeyer | correct string hanlding with building custom property label | Aug 6 2016 | ||||
4c26534245e2 | Axel Kohlmeyer | we cannot add a fix while creating a fix. move fix addintion to Fix::init() | Aug 6 2016 | ||||
1da862b44077 | Axel Kohlmeyer | rewrote balancing to use per-atom data stored via fix property/atom | Aug 6 2016 | ||||
4b3783d18c3d | Axel Kohlmeyer | custom property names should be compatible with string literals | Aug 6 2016 | ||||
62443e27bc14 | Axel Kohlmeyer | Merge branch 'lammps-icms' into balance-refactor | Aug 6 2016 | ||||
78b47137ba70 | Axel Kohlmeyer | Merge remote-tracking branch 'lammps-ro/master' into lammps-icms | Aug 6 2016 | ||||
0029040f1152 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15456 f3b2605a-c512-4ea7… | Aug 6 2016 | ||||
decd072117f3 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15455 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
30d60075655c | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15454 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
390b492d081c | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15453 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
9a3b988b2b8e | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15452 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
36a0c644a906 | athomps | Attempted to straighten out italics | Aug 5 2016 | ||||
96a73d51cd98 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15450 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
1780c86b8601 | athomps | Fixed error in ave/time version | Aug 5 2016 | ||||
32c8c9d63e4e | athomps | clarified energy contribution to minimization energy | Aug 5 2016 | ||||
754103324663 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15445 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
2d694f934e36 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15444 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
ce7581b86932 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15442 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
42cc69b843b1 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15441 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
e09caf843d4b | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15440 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
82a29a8adbfe | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15439 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
091fb71a9312 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15438 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
3fe162a42d13 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15437 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
9a9897cd447f | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15436 f3b2605a-c512-4ea7… | Aug 5 2016 | ||||
290cbb9b9126 | Axel Kohlmeyer | Merge remote-tracking branch 'lammps-ro/master' into lammps-icms | Aug 5 2016 | ||||
cd01e5855d2c | Axel Kohlmeyer | Merge branch 'lammps-icms' into balance-refactor | Aug 5 2016 | ||||
0f2e7241900b | Axel Kohlmeyer | create/use a ke compute instead of converting from temperature | Aug 4 2016 | ||||
a19ea3ee5e16 | Axel Kohlmeyer | remove unused variable | Aug 4 2016 | ||||
f4f8ce57a53e | Axel Kohlmeyer | port changes to dump file formatting from upstream to COMPRESS package | Aug 4 2016 | ||||
73368211c536 | Axel Kohlmeyer | fix bug introduced by steve. | Aug 4 2016 | ||||
88062030752a | Axel Kohlmeyer | Merge branch 'lammps-icms' of bitbucket.org:akohlmey/lammps-icms into lammps… | Aug 4 2016 | ||||
ca1050f5875b | Axel Kohlmeyer | delete redundant code and add comment to avoid doing this in the future | Aug 4 2016 | ||||
0bffc1711e3e | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15435 f3b2605a-c512-4ea7… | Aug 4 2016 | ||||
2a90afe7e9a1 | Axel Kohlmeyer | fix optional argument scanning bug | Aug 4 2016 | ||||
f884bb2c92ec | Axel Kohlmeyer | remove unused class member | Aug 4 2016 | ||||
71ef6fb4d95a | Axel Kohlmeyer | incorporate refactored weighting into fix balance | Aug 4 2016 | ||||
ecbbdc2e7ff0 | Axel Kohlmeyer | convert weight array from class member to local pointer to temporary storage | Aug 4 2016 | ||||
ad0633f7c142 | Axel Kohlmeyer | Merge remote-tracking branch 'lammps-ro/master' into lammps-icms | Aug 4 2016 | ||||
d40de42af861 | Axel Kohlmeyer | proof-of-concept implementation for neighbor list based balancing with yet… | Aug 4 2016 | ||||
3f674e5062aa | Axel Kohlmeyer | re-factored balance command now works with group and time weights | Aug 4 2016 | ||||
677da2ea52d9 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15432 f3b2605a-c512-4ea7… | Aug 3 2016 | ||||
a93e6e83ed58 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15431 f3b2605a-c512-4ea7… | Aug 3 2016 | ||||
efaa84a4eab8 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15430 f3b2605a-c512-4ea7… | Aug 3 2016 | ||||
1f6518400e83 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15429 f3b2605a-c512-4ea7… | Aug 3 2016 | ||||
8ff0085cba09 | Axel Kohlmeyer | complete implementation for group based imbalance class | Aug 3 2016 | ||||
be6c086cb4c1 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15428 f3b2605a-c512-4ea7… | Aug 3 2016 | ||||
a6ade15e60bb | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15427 f3b2605a-c512-4ea7… | Aug 3 2016 | ||||
b3664c217b1e | Axel Kohlmeyer | port code from serial implementation to /omp version | Aug 3 2016 | ||||
c8072e95bb53 | Axel Kohlmeyer | apply NEIGHMASK in inner loops | Aug 3 2016 | ||||
38226b808685 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15426 f3b2605a-c512-4ea7… | Aug 3 2016 | ||||
362a26a3def0 | Axel Kohlmeyer | prototype implementation for extensible imbalance scheme | Aug 3 2016 | ||||
7faba0408985 | Axel Kohlmeyer | fix subtle 64-bit integer bug in fix print and fix store/state | Aug 3 2016 | ||||
b44492ee05ab | Axel Kohlmeyer | fix elusive uninitialized data bug reported by valgrind | Aug 2 2016 | ||||
bda51f2bacca | Axel Kohlmeyer | be a bit more paranoid about initializing data structures | Aug 2 2016 | ||||
81b83331090b | Axel Kohlmeyer | update to colvars library version 2016-08-01 | Aug 2 2016 | ||||
58e77eacc721 | Axel Kohlmeyer | Merge branch 'balance-by-time' into lammps-icms | Aug 2 2016 | ||||
f758a4f4d06f | Axel Kohlmeyer | make it so that dynamic load balancing only uses the timing since the last… | Aug 2 2016 | ||||
f14e9cee83da | Axel Kohlmeyer | minor tweaks and comment fixes | Aug 2 2016 | ||||
af224028a925 | Axel Kohlmeyer | improve c++-11 compliance. replace variable size stack allocation. | Aug 2 2016 | ||||
2e0b9cae2980 | Axel Kohlmeyer | whitespace cleanup | Aug 2 2016 | ||||
b635930cfd98 | Axel Kohlmeyer | Merge branch 'lammps-icms' into balance-by-time | Aug 2 2016 | ||||
cc487af9e494 | Axel Kohlmeyer | Merge remote-tracking branch 'lammps-ro/master' into lammps-icms | Aug 2 2016 | ||||
9ea86965c57a | Axel Kohlmeyer | disable debug output and include bond cost as well | Aug 2 2016 | ||||
2a57dc6db460 | Axel Kohlmeyer | implement wall clock based load balancing cost function support | Aug 2 2016 | ||||
047f313356ba | Axel Kohlmeyer | undo changes to the group command related to load balancing | Aug 2 2016 | ||||
495ab323d1fd | Axel Kohlmeyer | remove unused function prototype | Aug 2 2016 | ||||
fdbce41887b0 | Axel Kohlmeyer | Merge branch 'balance-weight-by-group' into lammps-icms | Aug 2 2016 | ||||
76b8bbca8ea8 | Axel Kohlmeyer | update documentation according to the modified implementation based on iain… | Aug 2 2016 | ||||
5a81288329e1 | Axel Kohlmeyer | implement modified version of balance and fix balance according to steve's… | Aug 2 2016 | ||||
56502c7c0943 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15423 f3b2605a-c512-4ea7… | Aug 2 2016 | ||||
7326f8852106 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15422 f3b2605a-c512-4ea7… | Aug 2 2016 | ||||
1cdd1fd4f809 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15420 f3b2605a-c512-4ea7… | Aug 2 2016 | ||||
69513a29ab6a | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15419 f3b2605a-c512-4ea7… | Aug 2 2016 | ||||
98aee0515239 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15418 f3b2605a-c512-4ea7… | Aug 1 2016 | ||||
e6c5898e5371 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15417 f3b2605a-c512-4ea7… | Aug 1 2016 | ||||
a9a8a599d0fd | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15416 f3b2605a-c512-4ea7… | Aug 1 2016 | ||||
0995ab4b65c3 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15415 f3b2605a-c512-4ea7… | Aug 1 2016 | ||||
ce5f17428184 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15414 f3b2605a-c512-4ea7… | Aug 1 2016 | ||||
fa856c7657ad | Axel Kohlmeyer | undo changes to Group class | Aug 1 2016 | ||||
aaac40dcb4d8 | Axel Kohlmeyer | Merge branch 'weighted_load_balance' of https://github.com/ibethune/lammps into… | Aug 1 2016 | ||||
ef2f16a240ae | Axel Kohlmeyer | more thorough checks on valid numbers when computing box/virial related… | Aug 1 2016 | ||||
a8f40013b79f | Axel Kohlmeyer | remove unused variable | Aug 1 2016 | ||||
e3eb61765260 | Axel Kohlmeyer | update several old input files to current syntax | Aug 1 2016 | ||||
11f772969f88 | Axel Kohlmeyer | correct typo | Jul 31 2016 | ||||
1d17eed48ca5 | Axel Kohlmeyer | Merge remote-tracking branch 'lammps-ro/master' into lammps-icms | Jul 31 2016 | ||||
6ff87be84925 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15413 f3b2605a-c512-4ea7… | Jul 30 2016 | ||||
26622f2826fa | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15412 f3b2605a-c512-4ea7… | Jul 30 2016 | ||||
7ec3c90b86b0 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15411 f3b2605a-c512-4ea7… | Jul 30 2016 | ||||
fd05571ee03e | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15410 f3b2605a-c512-4ea7… | Jul 30 2016 | ||||
5b5f839265b4 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15409 f3b2605a-c512-4ea7… | Jul 30 2016 | ||||
d3e47eef1cc1 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15407 f3b2605a-c512-4ea7… | Jul 30 2016 | ||||
f9c6ec768b49 | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15406 f3b2605a-c512-4ea7… | Jul 30 2016 | ||||
fb13763ef91d | sjplimp | git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15404 f3b2605a-c512-4ea7… | Jul 30 2016 |
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