lammps/docmaster
lammps/doc
master
History Graph
History Graph
Commit | Author | Details | Committed | |||
---|---|---|---|---|---|---|
6e7504f15328 | Giacomo Fiorin | Import segfault fix in Colvars module | Oct 19 2017 | |||
f709a723cd97 | Steve Plimpton | cross ref fix deform and new fix nvt/uef | Oct 18 2017 | |||
281b1dc37571 | Steve Plimpton | small updates to recently added docs and rename of an example dir | Oct 18 2017 | |||
e93f8f888975 | Steve Plimpton/GitHub | Merge pull request #671 from danicholson/user-uef | Oct 18 2017 | |||
35f2cfa0bfaf | Steve Plimpton/GitHub | Merge pull request #669 from urpedersen/master | Oct 18 2017 | |||
374d619769c2 | Axel Kohlmeyer | add gromos bond style | Oct 16 2017 | |||
3e89b270fdf8 | Giacomo Fiorin | Update Colvars to version 2017-10-11 | Oct 13 2017 | |||
a1f5693fe08e | Steve Plimpton/GitHub | Merge pull request #681 from lammps/dump-modify | Oct 9 2017 | |||
b6187173e626 | Christoph Junghans | Merge branch 'master' into HEAD | Oct 7 2017 | |||
88a33edb5022 | Steve Plimpton/GitHub | Merge pull request #680 from lammps/map-yes | Oct 7 2017 | |||
6820db99e22f | Axel Kohlmeyer | avoid merge conflict | Oct 6 2017 | |||
e91e505fb36e | Steve Plimpton | remove dependence of dump modify 'at' and 'append' | Oct 6 2017 | |||
f7cbdcf99584 | Steve Plimpton/GitHub | Merge pull request #673 from pastewka/17_dump_nc2 | Oct 6 2017 | |||
352a20fc1cb7 | Lars Pastewka | DOC: Updated doc to separate description of 'append' and 'at' keywords. | Oct 6 2017 | |||
05847a0e8713 | Axel Kohlmeyer/GitHub | Merge branch 'master' into user-intel-update | Oct 6 2017 | |||
15853a0e38dc | Steve Plimpton/GitHub | Merge pull request #676 from stanmoore1/kokkos_reverse_comm | Oct 6 2017 | |||
214c0cfb2b7e | Steve Plimpton | add atom_modify map yes, also timers to create_atoms and replicate | Oct 6 2017 | |||
ca032f21fbfa | Stan Moore | Add Kokkos threaded reverse comm option | Oct 3 2017 | |||
1bb7af9ef91a | Axel Kohlmeyer | integrate fix rhok into the LAMMPS source code management and documentation… | Oct 3 2017 | |||
5e8926963126 | Michael Brown | Minor adjustments to intel makefiles and documentation based on the reversed… | Oct 3 2017 | |||
11eed234f08a | Axel Kohlmeyer | include dump cfg/uef in commands toctree | Oct 3 2017 | |||
af1fc45db0b3 | David Nicholson | added citation to doc | Oct 3 2017 | |||
466fde6443bf | Axel Kohlmeyer | update documentation for the reversal in the INTEL_MKL_RNG define | Oct 3 2017 | |||
92d9b361fcda | Axel Kohlmeyer | include USER-UEF styles in PDF version of manual | Oct 2 2017 | |||
cf24dd026520 | Michael Brown | Adding pair style dpd/intel and dihedral style fourier/intel Adding raw… | Oct 2 2017 | |||
a7b0d1f521af | Lars Pastewka | DOC: Corrected syntax for appending at certain frame (NetCDF only) | Oct 1 2017 | |||
da7be99cc4a3 | Lars Pastewka | DOC: Added multi file example. | Oct 1 2017 | |||
2a06b75af84c | David Nicholson | doc revisions | Sep 29 2017 | |||
c66ddf9ac0e8 | Ulf R. Pedersen/GitHub | Update fix_rhok.txt | Sep 29 2017 | |||
480b087c9392 | David Nicholson | doc edits, README, and citeme | Sep 29 2017 | |||
0029583463c1 | David Nicholson | doc edits i missed in earlier commit | Sep 28 2017 | |||
80898b86959c | David Nicholson | first draft of doc done | Sep 28 2017 | |||
855b6000efcb | David Nicholson | initial commit. doc is in the works | Sep 28 2017 | |||
10d1741e7f08 | Ulf R. Pedersen/GitHub | Update fix_rhok.txt | Sep 28 2017 | |||
d11733d3a0ee | Ulf R. Pedersen | typo in equation | Sep 28 2017 | |||
75b3f34a582c | Ulf R. Pedersen | Update documentation | Sep 28 2017 | |||
fe80c57bdef9 | Ulf R. Pedersen | more documentation | Sep 28 2017 | |||
e49f0e396b60 | Ulf R. Pedersen/GitHub | Create fix_rhok.txt | Sep 28 2017 | |||
37e55a825b31 | Ulf R. Pedersen/GitHub | Create fix_rhok.txt | Sep 28 2017 | |||
de45fa6e7107 | Axel Kohlmeyer | correct bogus links in LATTE docs | Sep 27 2017 | |||
bfdc4acb8bbe | Axel Kohlmeyer | add missing entry for pdf version of manual | Sep 26 2017 | |||
fd3ecd048120 | Axel Kohlmeyer | fix typo in formatting | Sep 26 2017 | |||
8bba6d3e8c63 | Axel Kohlmeyer | correct formatting and broken/colliding link issues with LATTE package related… | Sep 26 2017 | |||
f2c1172741b5 | Steve Plimpton | patch 22Sep17 | Sep 22 2017 | |||
ee487ef4aa4f | Steve Plimpton/GitHub | Merge pull request #652 from junghans/latte | Sep 22 2017 | |||
a8ae8866676e | Steve Plimpton | update fix latte examples and virial | Sep 21 2017 | |||
dd49d54889a2 | Steve Plimpton | new SNAP potentials and examples | Sep 20 2017 | |||
fbaa7ab8fa55 | Steve Plimpton/GitHub | Merge pull request #655 from akohlmey/fixes-for-patch | Sep 20 2017 | |||
2e9803efb31d | Steve Plimpton/GitHub | Merge pull request #645 from akohlmey/kokkos-makefile-updates | Sep 20 2017 | |||
76d93f21dd9c | Steve Plimpton | add fix latte command to doc pages | Sep 20 2017 | |||
ac897ea6457c | Steve Plimpton | LATTE package doc update and some small code changes | Sep 20 2017 | |||
cdb6ec7419d0 | Axel Kohlmeyer | reverse the pre-processor logic of the LRT mode define | Sep 19 2017 | |||
d101fe3e79fd | Steve Plimpton/GitHub | Merge pull request #649 from akohlmey/fix-virial-aidan | Sep 15 2017 | |||
99e5dc710461 | Axel Kohlmeyer | add support for fix_modify virial yes to fix smd | Sep 15 2017 | |||
ccb67d8dc511 | Axel Kohlmeyer | correct cut-n-paste errors in the documentation of fix_modify virial | Sep 15 2017 | |||
2cd7cbd96415 | Axel Kohlmeyer | correct cut-n-paste error, add docs | Sep 15 2017 | |||
e196a2b9e54a | Axel Kohlmeyer | import changes to various fixes by aidan to include virial contributions | Sep 12 2017 | |||
366d08702780 | Axel Kohlmeyer | update docs for changes to makefiles | Sep 6 2017 | |||
fe557cb882e2 | Axel Kohlmeyer | fix typo in commands table | Sep 6 2017 | |||
c80203cb0115 | Steve Plimpton/GitHub | Merge pull request #641 from lammps/doc-tweak | Sep 6 2017 | |||
4161868bcf69 | Steve Plimpton/GitHub | Merge pull request #640 from ohenrich/user-cgdna | Sep 6 2017 | |||
99791ce01c09 | Steve Plimpton/GitHub | Merge pull request #632 from timattox/USER-DPD_kokkos_merge | Sep 6 2017 | |||
d886cc91f3b3 | Axel Kohlmeyer | fix syntax error in fix saed/vtk docs example | Sep 5 2017 | |||
45602e58f99a | Axel Kohlmeyer/GitHub | fix another couple of typos | Sep 5 2017 | |||
cd72532fb934 | Axel Kohlmeyer/GitHub | fix typo | Sep 5 2017 | |||
b1706060529b | Steve Plimpton/GitHub | Merge pull request #620 from amilumas/master | Sep 5 2017 | |||
65b295e826aa | Steve Plimpton/GitHub | Merge pull request #638 from jdevemy/master | Sep 5 2017 | |||
89a0bc947f01 | Steve Plimpton | small update to docs for new commands | Sep 5 2017 | |||
c8967a335f26 | Oliver Henrich | Included hyperlink to package | Sep 5 2017 | |||
2105145f55e6 | Oliver Henrich | More minor changes | Sep 5 2017 | |||
f7715ab6ce3c | Oliver Henrich | Added comment about optimised damping coefficient for BD | Sep 5 2017 | |||
12fe614ddf58 | Oliver Henrich | Added sequence-dependent stacking and base-pairing strength | Sep 5 2017 | |||
2b9646097c86 | Steve Plimpton | Merge branch 'master' of github.com:lammps/lammps | Sep 1 2017 | |||
f58088ae619d | Steve Plimpton | patch 1Sep17 | Sep 1 2017 | |||
f3dda30f8ef3 | Axel Kohlmeyer | fully integrate temper/npt command into manual | Aug 31 2017 | |||
a5b65c1af48c | Julien Devemy | Mods for extra/special/per/atom and add toluene | Aug 31 2017 | |||
f57d19492051 | Amulya/GitHub | Add files via upload | Aug 29 2017 | |||
736e063971bc | Tim Mattox | Merge branch 'master' (21893539cb Aug 25) into USER-DPD_kokkos_merge | Aug 28 2017 | |||
81ba181349d7 | Steve Plimpton | tweak an eq in USER-MESO, also allow neigh to be built w/out styles | Aug 26 2017 | |||
e52a28f8afaf | Stan Moore | Update docs for Kokkos version of USER-DPD package | Aug 26 2017 | |||
6db3bd87ee73 | Axel Kohlmeyer | correct typo in header formatting | Aug 23 2017 | |||
7b7a5076d00a | Steve Plimpton/GitHub | Merge pull request #624 from akohlmey/compute-fragment | Aug 23 2017 | |||
f7a0a6eb7069 | Steve Plimpton/GitHub | Merge pull request #622 from akohlmey/collected-small-fixes | Aug 23 2017 | |||
97edf90a7389 | Axel Kohlmeyer | update fix qeq docs for the new, more flexible parameter file format | Aug 23 2017 | |||
cdfb1aa04375 | Axel Kohlmeyer | make links unique, fix doc format warnings and add entries to administrative… | Aug 23 2017 | |||
b80752a40c56 | Axel Kohlmeyer | restore changes to read_data docs, that would have been lost due to merging an… | Aug 23 2017 | |||
5a0c3aea8ac1 | Axel Kohlmeyer | add a compute aggregate/atom, that combines the rules for compute cluster/atom… | Aug 21 2017 | |||
f5b8f722eee3 | Axel Kohlmeyer | remove non-portable non-ascii blanks from fix wall/ees docs | Aug 20 2017 | |||
39e51df2c004 | Axel Kohlmeyer | add missing entry in pdf manual | Aug 20 2017 | |||
4dc1195cd851 | Axel Kohlmeyer | add docs for compute fragment/atom | Aug 20 2017 | |||
f945d4567d4f | Steve Plimpton | new USER-MESO package | Aug 19 2017 | |||
7ddcb6812b44 | Steve Plimpton | patch 17Aug17 | Aug 18 2017 | |||
76cd61350d4c | Steve Plimpton/GitHub | Merge pull request #613 from akohlmey/collected-small-changes | Aug 17 2017 | |||
fa3c0c61d6a8 | Steve Plimpton/GitHub | Merge pull request #618 from lammps/intel | Aug 17 2017 | |||
c46d5ff422c2 | Steve Plimpton/GitHub | Merge pull request #612 from giacomofiorin/colvars-update-2017-08-10 | Aug 17 2017 | |||
7175abcc7170 | Axel Kohlmeyer | flag more pair styles as supporting USER-INTEL to match newly added code | Aug 16 2017 | |||
e34b20405c28 | Axel Kohlmeyer/GitHub | Fix a couple of typos in the docs | Aug 16 2017 | |||
1d4d2155a23b | Steve Plimpton | USER-INTEL add-ons from Mike | Aug 16 2017 | |||
cee87d7a54b5 | Axel Kohlmeyer | update manual to point to packages.lammps.org instead of rpm.lammps.org | Aug 15 2017 | |||
0b3f1b8a156d | Steve Plimpton | patch 11Aug17 | Aug 11 2017 |
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