bridging_interface.cc
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bridging_interface.cc
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	/**
	* @file bridging.cc
	*
	* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
	*
	* @date Fri Jul 11 15:47:44 2014
	*
	* @brief Bridging object between atomistic and finite elements
	*
	* @section LICENSE
	*
	* Copyright INRIA and CEA
	*
	* The LibMultiScale is a C++ parallel framework for the multiscale
	* coupling methods dedicated to material simulations. This framework
	* provides an API which makes it possible to program coupled simulations
	* and integration of already existing codes.
	*
	* This Project was initiated in a collaboration between INRIA Futurs Bordeaux
	* within ScAlApplix team and CEA/DPTA Ile de France.
	* The project is now continued at the Ecole Polytechnique Fédérale de Lausanne
	* within the LSMS/ENAC laboratory.
	*
	* This software is governed by the CeCILL-C license under French law and
	* abiding by the rules of distribution of free software. You can use,
	* modify and/ or redistribute the software under the terms of the CeCILL-C
	* license as circulated by CEA, CNRS and INRIA at the following URL
	* "http://www.cecill.info".
	*
	* As a counterpart to the access to the source code and rights to copy,
	* modify and redistribute granted by the license, users are provided only
	* with a limited warranty and the software's author, the holder of the
	* economic rights, and the successive licensors have only limited
	* liability.
	*
	* In this respect, the user's attention is drawn to the risks associated
	* with loading, using, modifying and/or developing or reproducing the
	* software by the user in light of its specific status of free software,
	* that may mean that it is complicated to manipulate, and that also
	* therefore means that it is reserved for developers and experienced
	* professionals having in-depth computer knowledge. Users are therefore
	* encouraged to load and test the software's suitability as regards their
	* requirements in conditions enabling the security of their systems and/or
	* data to be ensured and, more generally, to use and operate it in the
	* same conditions as regards security.
	*
	* The fact that you are presently reading this means that you have had
	* knowledge of the CeCILL-C license and that you accept its terms.
	*
	*/

	//#define TIMER
	/* -------------------------------------------------------------------------- */
	#include "bridging.hh"
	#include "compute_extract.hh"
	#include "factory_multiscale.hh"
	#include "filter_geometry.hh"
	#include "geometry_manager.hh"
	#include "lib_bridging.hh"
	#include "lm_common.hh"
	#include "trace_atom.hh"
	/* -------------------------------------------------------------------------- */
	__BEGIN_LIBMULTISCALE__

	// Bridging::Bridging(const std::string &name)
	// : // unmatchedPointList("unmatched-point-" + name),
	// // pointList("matched-point-" + name),
	// // unmatchedMeshList("unmatched-fe-" + name), meshList("matched-fe-" +
	// // name),
	// node_shape("node_shape-" + name) {
	// assoc_found = 0;
	// // smatrix = NULL;

	// // unmatchedPointList.setCommGroup(this->comm_group_A);
	// // pointList.setCommGroup(this->comm_group_A);
	// // unmatchedMeshList.setCommGroup(this->comm_group_B);
	// // meshList.setCommGroup(this->comm_group_B);
	// /* registering computes for outer world */
	// // FilterManager::getManager().addObject(unmatchedMeshList);
	// // FilterManager::getManager().addObject(unmatchedPointList);
	// // FilterManager::getManager().addObject(pointList);
	// // FilterManager::getManager().addObject(meshList);
	// }
	/* -------------------------------------------------------------------------- */
	// Bridging::~Bridging() {}
	/* -------------------------------------------------------------------------- */

	// void Bridging::init() {

	// DUMPBYPROC("selecting DOFs in bridging zone", DBG_INFO_STARTUP, 0);
	// if (this->in_group_A) {
	// this->buildPointList();
	// this->buildPositions(unmatchedPointList);
	// }
	// if (this->in_group_B)
	// this->buildContinuumDOFsList();

	// DUMP(this->getID() << " : Generating Communication Scheme",
	// DBG_INFO_STARTUP); MPI_Barrier(MPI_COMM_WORLD); DUMP(this->getID() << " :
	// exchange coarse geometries", DBG_MESSAGE);
	// this->exchangeGeometries(this->unmatchedPointList,
	// this->unmatchedMeshList); MPI_Barrier(MPI_COMM_WORLD);

	// DUMP(this->getID() << " : exchange points positions", DBG_MESSAGE);
	// this->exchangePositions(ContainerPoints::Dim);
	// MPI_Barrier(MPI_COMM_WORLD);

	// DUMP(this->getID() << " : build shape matrix", DBG_MESSAGE);
	// if (this->in_group_B) {
	// DUMP(this->getID() << " : build shape matrix (parsing "
	// << this->local_points << " points by position)",
	// DBG_INFO);
	// this->buildShapeMatrix(this->local_points);
	// this->local_points = this->assoc_found;
	// DUMP(this->getID() << " : I will manage " << this->local_points << "
	// atoms",
	// DBG_INFO);
	// }
	// MPI_Barrier(MPI_COMM_WORLD);

	// DUMP(this->getID() << " : ExchangeAssociation", DBG_MESSAGE);
	// ContainerArray<UInt> managed;
	// this->exchangeAssociationInformation(managed);

	// if (this->in_group_A)
	// for (UInt i = 0; i < this->nb_zone_B; ++i)
	// DUMP("second test Do I communicate with " << i << " : "
	// << this->com_with[i],
	// DBG_INFO);

	// if (this->in_group_B)
	// for (UInt i = 0; i < this->nb_zone_A; ++i)
	// DUMP("second test Do I communicate with " << i << " : "
	// << this->com_with[i],
	// DBG_INFO);

	// MPI_Barrier(MPI_COMM_WORLD);

	// DUMP(this->getID()
	// << " : generate duo vector and detect double atom assignement",
	// DBG_MESSAGE);
	// std::vector<std::vector<UInt>> unassociated;
	// if (this->in_group_A)
	// this->createDuoVectorA("Atom", managed, unassociated);

	// DUMP(this->getID() << " : doing exchange rejected", DBG_MESSAGE);
	// this->exchangeRejectedContinuumOwners(unassociated);

	// MPI_Barrier(MPI_COMM_WORLD);

	// DUMP(this->getID() << " : doing filter rejected", DBG_MESSAGE);
	// this->filterRejectedContinuumOwners(unassociated);
	// MPI_Barrier(MPI_COMM_WORLD);

	// DUMP(this->getID() << " : filtering position & association vector",
	// DBG_MESSAGE);

	// if (this->in_group_A) {
	// this->filterPointListForUnmatched();
	// }

	// if (this->in_group_B) {
	// this->filterArray(this->positions);
	// this->filterAssoc();
	// this->buildNodeShape();
	// }

	// this->grid.reset();

	// DUMP(this->getID() << " : all done for scheme generation", DBG_MESSAGE);

	// MPI_Barrier(MPI_COMM_WORLD);
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::buildContinuumDOFsList() {

	// unmatchedMeshList.setParam("GEOMETRY", this->geomID);
	// unmatchedMeshList.buildManual(contMesh);

	// DUMP("we have found " << unmatchedMeshList->getContainerElems().size()
	// << " concerned elements",
	// DBG_INFO_STARTUP);

	// STARTTIMER("Filling spatial-grid");

	// auto contElems = unmatchedMeshList->getContainerElems();
	// auto contNodes = unmatchedMeshList->getContainerNodes();

	// std::vector<UInt> nodes;
	// Geometry &geom = *GeometryManager::getManager().getGeometry(this->geomID);
	// Cube cube = geom.getBoundingBox();
	// DUMP("geometry of the grid => \n" << cube, DBG_INFO_STARTUP);
	// this->grid.reset();
	// LM_TOIMPLEMENT;
	// // this->grid = new SpatialGridElem<UInt, ContainerPoints::Dim>(
	// // cube, this->grid_division);

	// UInt nb_elem = 0;
	// for (auto &&el : contElems) {
	// std::vector<Real> node_coords;
	// auto &&nodes = el.globalIndexes();
	// UInt nb = nodes.size();

	// for (UInt i = 0; i < nb; ++i) {
	// auto nd = el.getNode(i);
	// #ifndef LM_OPTIMIZED
	// Real mass_node = nd.mass();
	// #endif
	// LM_ASSERT(mass_node > 0, "invalid mass" << nodes[i] << " " <<
	// mass_node);

	// auto X = nd.position0();
	// for (UInt i = 0; i < ContainerPoints::Dim; ++i)
	// node_coords.push_back(X[i]);
	// }

	// this->grid->addFiniteElement(nb_elem, node_coords);
	// ++nb_elem;
	// }
	// STOPTIMER("Filling spatial-grid");

	// DUMP("we have found " << nb_elem << " concerned elements",
	// DBG_INFO_STARTUP); DUMP("in average " << this->grid->getAverageEltByBlock()
	// << " elements par block",
	// DBG_INFO_STARTUP);
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::buildNodeList() {

	// meshList.computeAlteredConnectivity(contMesh.getContainerNodes());
	// UInt nb = meshList.size();
	// if (!nb) {
	// DUMP("We found no nodes in bridging zone", DBG_INFO_STARTUP);
	// return;
	// }

	// DUMP("We found " << nb << " nodes concerned into "
	// << meshList.getContainerElems().size() << " elements",
	// DBG_INFO_STARTUP);
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::buildPointList() {

	// unmatchedPointList.setParam("GEOMETRY", this->geomID);
	// unmatchedPointList.buildManual(contPoints);
	// this->local_points = unmatchedPointList->size();

	// if (!this->local_points)
	// DUMP("We found no atom in the bridging zone", DBG_INFO);

	// DUMP("We found " << this->local_points << " atom in the bridging zone",
	// DBG_INFO_STARTUP);
	// }
	// /* --------------------------------------------------------------------------
	// */

	// // // void Bridging::buildShapeMatrix(UInt nb_atoms) {

	// // // this->pointToElement.assign(nb_atoms, UINT_MAX);

	// // // if (unmatchedMeshList->getContainerElems().size() == 0) {
	// // // DUMP("elem_rec is empty!", DBG_WARNING);
	// // // // delete grid;
	// // // return;
	// // // }

	// // // std::vector<UInt> nb_atoms_per_element;
	// // //
	// nb_atoms_per_element.resize(unmatchedMeshList->getContainerElems().size());

	// // // /* construction du array d'assoc atoms elem */

	// // // STARTTIMER("Construction association");

	// // // for (UInt i = 0; i < nb_atoms; ++i) {

	// // // #ifndef TIMER
	// // // if (i % 100000 == 0)
	// // // DUMP("construction de l'association - atome " << i << "/" <<
	// nb_atoms,
	// // // DBG_INFO);
	// // // #endif

	// // // Vector<ContainerPoints::Dim> x;
	// // // for (UInt k = 0; k < ContainerPoints::Dim; ++k)
	// // // x[k] = this->positions(i, k);

	// // // std::vector<UInt> &subset_elts = this->grid->findSet(x);
	// // // std::vector<UInt>::iterator it = subset_elts.begin();

	// // // for (it = subset_elts.begin(); it != subset_elts.end(); ++it) {

	// // // auto el = unmatchedMeshList->getContainerElems().get(*it);
	// // // UInt j = *it;

	// // // DUMP("is atom " << i << " within element " << j << "?", DBG_ALL);

	// // // if (el.contains(x)) {
	// // // LM_ASSERT(this->pointToElement[i] == UINT_MAX,
	// // // "this should not happen. "
	// // // << "I found twice the same atom while
	// filtering");
	// // // DUMP("associating atom " << i << " and element " << j,
	// DBG_ALL);
	// // // this->pointToElement[i] = j;
	// // // ++assoc_found;
	// // // break;
	// // // }
	// // // }

	// // // if (it == subset_elts.end()) {
	// // // this->pointToElement[i] = UINT_MAX;
	// // // }
	// // // }

	// // // STOPTIMER("Construction association");

	// // // /* build number of atoms per element */
	// // // for (UInt i = 0; i < nb_atoms; ++i) {
	// // // if (this->pointToElement[i] != UINT_MAX)
	// // // ++nb_atoms_per_element[this->pointToElement[i]];
	// // // }

	// // // /* filter element list and node list for the unassociated node and
	// elements */
	// // // filterContainerElems(nb_atoms_per_element);
	// // // buildNodeList();

	// // // smatrix = new ShapeMatrix<ContainerPoints::Dim>(
	// // // meshList.getContainerElems().size());

	// // // UInt i = 0;
	// // // for (auto &&el : meshList.getContainerElems()) {
	// // // DUMP("declare sub matrix number " << i << " which will be of size "
	// // // << nb_atoms_per_element[i] << "x"
	// // // << el.nNodes(),
	// // // DBG_ALL);
	// // // LM_ASSERT(nb_atoms_per_element[i] > 0, "this should not happen any
	// more");
	// // // smatrix->setSub(i, nb_atoms_per_element[i], el.nNodes());
	// // // ++i;
	// // // }
	// // // // Allocate the shapematrix structure (contiguous)
	// // // smatrix->allocate();

	// // // /* set the indirection (alloc tab) plus the shapes */
	// // // std::vector<Real> shapes;

	// // // UInt atom_index = 0;

	// // // for (i = 0; i < nb_atoms; ++i) {
	// // // if (this->pointToElement[i] == UINT_MAX)
	// // // continue;

	// // // Vector<ContainerPoints::Dim> X;
	// // // for (UInt k = 0; k < ContainerPoints::Dim; ++k)
	// // // X[k] = this->positions(i, k);

	// // // auto el =
	// meshList.getContainerElems().get(this->pointToElement[i]);
	// // // el.computeShapes(shapes, X);
	// // // auto &&nodes = el.globalIndexes();

	// // IF_TRACED(X, "checking for atom in trouble");

	// // std::vector<UInt> local_nodes(shapes.size());
	// for (UInt nd = 0; nd < shapes.size(); ++nd)
	// local_nodes[nd] = meshList.subIndex2Index(nodes[nd]);

	// smatrix->fill(atom_index, this->pointToElement[i], nodes, local_nodes,
	// shapes);
	// ++atom_index;
	// }
	// }
	/* -------------------------------------------------------------------------- */
	// void Bridging::buildLocalPBCPairs() {

	// UInt npairs = pbc_pairs.size();
	// for (UInt pair = 0; pair < npairs; ++pair) {
	// UInt ind1 = pbc_pairs[pair].first;
	// UInt ind2 = pbc_pairs[pair].second;
	// UInt i1 = meshList.subIndex2Index(ind1);
	// UInt i2 = meshList.subIndex2Index(ind2);
	// if (i1 == UINT_MAX \|\| i2 == UINT_MAX)
	// continue;

	// std::pair<UInt, UInt> p((UInt)(i1), (UInt)(i2));
	// local_pbc_pairs.push_back(p);
	// }
	// DUMP("Detected " << local_pbc_pairs.size() << " local pairs", DBG_MESSAGE);
	// smatrix->alterMatrixIndexesForPBC(local_pbc_pairs);
	// }
	/* -------------------------------------------------------------------------- */
	// void Bridging::buildNodeShape() {

	// if (this->local_points == 0)
	// return;

	// UInt nb_coupled_nodes = meshList.size();
	// node_shape.assign(nb_coupled_nodes, 0);

	// LM_ASSERT(smatrix, "shapematrix object was not allocated "
	// << " eventhough local atoms were detected");
	// smatrix->buildNodeShape(node_shape);

	// buildLocalPBCPairs();
	// cumulPBC(node_shape);

	// #ifndef LM_OPTIMIZED

	// for (UInt i = 0; i < nb_coupled_nodes; ++i) {
	// if (node_shape[i] <= 1e-1) {
	// DUMP(i << " " << node_shape[i], DBG_MESSAGE);
	// LM_FATAL("Please check your geometry:"
	// << " one or more nodes has zero nodal shape values."
	// << " Changing the FE element size may resolve this issue!"
	// << std::endl);
	// }
	// }

	// #endif // LM_OPTIMIZED

	// FilterManager::getManager().addObject(node_shape);
	// }
	/* -------------------------------------------------------------------------- */
	// void Bridging::filterContainerElems(
	// std::vector<UInt> &nb_atome_par_element) {

	// typename ContainerMeshSubset::ContainerElems new_t(this->getID() +
	// ":elems"); std::vector<int> new_index;

	// for (UInt i = 0; i < nb_atome_par_element.size(); ++i) {
	// DUMP("filtering old index element " << i, DBG_ALL);
	// if (nb_atome_par_element[i] > 0) {

	// DUMP("for container, elem " << i << " becomes " << new_t.size(),
	// DBG_ALL); new_index.push_back(new_t.size());

	// DUMP("maintenant nb_atome_par_element["
	// << new_t.size() << "]= " << nb_atome_par_element[i]
	// << " (i=" << i << ")",
	// DBG_ALL);
	// nb_atome_par_element[new_t.size()] = nb_atome_par_element[i];
	// new_t.push_back(unmatchedMeshList->getContainerElems().get(i));
	// } else
	// new_index.push_back(new_t.size());
	// }
	// nb_atome_par_element.resize(new_t.size());
	// meshList.clear();

	// // rebuild the element container
	// for (UInt i = 0; i < new_t.size(); ++i)
	// meshList.getContainerElems().push_back(new_t.get(i));
	// // rebuild the association list
	// for (UInt i = 0; i < this->pointToElement.size(); ++i) {
	// if (this->pointToElement[i] != UINT_MAX) {
	// this->pointToElement[i] = new_index[this->pointToElement[i]];
	// }
	// }
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::filterPointListForUnmatched() {

	// pointList.clear();

	// for (UInt i = 0; i < this->pointToElement.size(); ++i)
	// if (this->pointToElement[i] != UINT_MAX) {
	// DUMP("for container, atom " << i << " becomes " << pointList.size(),
	// DBG_ALL);
	// pointList.push_back(unmatchedPointList->get(i));
	// } else {
	// DUMP("atom filtered " << i << " " << unmatchedPointList->get(i),
	// DBG_DETAIL);
	// }
	// pointList.copyContainerInfo(unmatchedPointList);
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::filterArray(ContainerArray<Real> &array) {
	// UInt index = 0;
	// for (UInt i = 0; i < this->pointToElement.size(); ++i)
	// if (this->pointToElement[i] != UINT_MAX) {
	// DUMP("for container, atom " << i << " becomes " << index, DBG_ALL);
	// LM_ASSERT(i < array.size() && index < array.size(),
	// "overflow detected: nmax = " << array.size() << " , index = "
	// << index << " and i = " << i);

	// array(index) = array(i);
	// ++index;
	// }
	// }
	/* -------------------------------------------------------------------------- */

	// template <typename ContainerPoints, typename ContainerMesh, UInt Dim>
	// void Bridging<ContainerPoints, ContainerMesh,
	// Dim>::allocateBuffer(UInt nrows,
	// UInt
	// ncols) {

	// buffer.resize(nrows, ncols);
	// }
	// /* --------------------------------------------------------------------------
	// */

	// void Bridging::interpolatePointData(ContainerArray<Real> &data_atom,
	// ContainerArray<Real> &data_node)
	// {

	// if (this->local_points == 0) {
	// DUMP("Warning : atomic container is empty:"
	// << " cannot interpolate mesh fields on control points (check "
	// "geometries ?!)",
	// DBG_WARNING);
	// return;
	// }
	// smatrix->interpolate(data_atom, data_node);
	// }

	/* -------------------------------------------------------------------------- */

	// void Bridging::cumulPBC(ContainerArray<Real> &data) {

	// UInt npairs [[gnu::unused]] = local_pbc_pairs.size();
	// DUMP("Detected " << npairs << " local pairs", DBG_INFO);
	// for (auto &&pair : local_pbc_pairs) {
	// UInt i1 = pair.first;
	// UInt i2 = pair.second;

	// data(i2) += data(i1);
	// }
	// for (auto &&pair : local_pbc_pairs) {
	// UInt i1 = pair.first;
	// UInt i2 = pair.second;
	// data(i1) = data(i2);
	// }
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::leastSquarePointData(ContainerArray<Real> &,
	// ContainerArray<Real> &, UInt) {
	// LM_TOIMPLEMENT;
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::solveLeastSquare(ContainerArray<Real> &mesh_data,
	// ContainerArray<Real> &atomic_data) {

	// // build right hand side of leastsquare system
	// mesh_data.resize(meshList.size(), atomic_data.cols());
	// smatrix->buildLeastSquareRHS(mesh_data, atomic_data);
	// cumulPBC(mesh_data);

	// LM_ASSERT(node_shape.size() != 0,
	// "node_shape is empty this should not happen, check geometry");
	// // solve least square system
	// for (UInt i = 0; i < meshList.size(); ++i) {
	// mesh_data(i) /= node_shape[i];
	// }
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::averageOnElements(ContainerArray<Real> &data_atomic,
	// ContainerArray<Real> &data_mesh) {

	// data_mesh.assign(meshList.getContainerElems().rows(),
	// meshList.getContainerElems().cols());
	// smatrix->averageOnElements(data_atomic, data_mesh);
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::clearAll() {
	// if (smatrix)
	// delete smatrix;
	// smatrix = NULL;
	// meshList.getContainerElems().clear();
	// // nodeList.clear();
	// assoc_found = 0;
	// this->pointToElement.clear();
	// pointList.clear();
	// }

	/* -------------------------------------------------------------------------- */

	// void Bridging::buildLeastSquareMatrix(math::Matrix &mat) {
	// smatrix->buildLeastSquareMatrix(&mat);
	// cumulPBC(mat);
	// }

	/* -------------------------------------------------------------------------- */

	// void Bridging::cumulPBC(math::Matrix &mat) {

	// UInt npairs = local_pbc_pairs.size();

	// for (UInt pair = 0; pair < npairs; ++pair) {
	// UInt i1 = local_pbc_pairs[pair].first;
	// UInt i2 = local_pbc_pairs[pair].second;
	// for (UInt j = 0; j < mat.n(); ++j) {
	// mat(i2, j) += mat(i1, j);
	// }
	// }

	// for (UInt pair = 0; pair < npairs; ++pair) {
	// UInt i1 = local_pbc_pairs[pair].first;
	// for (UInt j = 0; j < mat.n(); ++j) {
	// if (i1 == j)
	// mat(i1, j) = 1.;
	// else
	// mat(i1, j) = 0.;
	// }
	// }
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::copySlaveValues(ContainerArray<Real> &v) {

	// for (auto &&pair : local_pbc_pairs) {
	// UInt i1 = pair.first;
	// UInt i2 = pair.second;
	// v(i1) = v(i2);
	// }
	// }

	/* -------------------------------------------------------------------------- */
	// void Bridging::extractShapeMatrix(math::Matrix &mat) {
	// smatrix->extractShapeMatrix(&mat);
	// }

	/* -------------------------------------------------------------------------- */
	/* Parallel Methods */
	/* -------------------------------------------------------------------------- */

	// void Bridging::communicateBufferAtom2Continuum(ContainerArray<Real> &buf) {

	// if (this->local_points != 0) {
	// this->distributeVectorA2B("communicate buffer", buf);
	// }
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::communicateBufferContinuum2Atom(ContainerArray<Real> &buf) {

	// if (this->local_points != 0) {
	// this->distributeVectorB2A("communicate buffer", buf);
	// }
	// }
	// /* --------------------------------------------------------------------------
	// */

	// void Bridging::synchSumBuffer(ContainerArray<Real> &buf) {

	// if (this->local_points != 0) {
	// this->synchronizeVectorBySum("synchsumvector", buf);
	// }
	// }
	// /* --------------------------------------------------------------------------
	// */

	// void Bridging::projectPointDataOnMesh(ContainerArray<Real> &point_data,
	// ContainerArray<Real> &continuum_field,
	// const std::string &message) {

	// if (is_in_continuum && !this->total_points)
	// DUMP("Warning : atomic container is empty: "
	// << "cannot proceed atomic projection (check geometries ?!)",
	// DBG_WARNING);

	// if (is_in_continuum)
	// this->interpolatePointData(continuum_field, point_data);

	// this->distributeVectorB2A(message, point_data);
	// }

	/* -------------------------------------------------------------------------- */
	// void Bridging::projectAtomicDOFsOnMesh(FieldType field) {

	// if (is_in_continuum && !this->total_points)
	// DUMP("Warning : atomic container is empty: "
	// << "cannot proceed atomic projection (check geometries ?!) "
	// << this->getID(),
	// DBG_WARNING);

	// if (!this->local_points)
	// return;
	// this->buffer.resize(this->local_points, spatial_dimension);

	// if (is_in_continuum)
	// this->interpolateAtomicDOFs(field);

	// this->distributeVectorB2A("correction_fictifs", this->buffer);

	// if (is_in_atomic)
	// this->setAtomicDOFs(field);
	// }
	/* -------------------------------------------------------------------------- */

	// void Bridging::attachVector(ContainerArray<Real> &tab) {
	// if (domA.getContainer().hasRefManager())
	// domA.getContainer().getRefManager()->attachVector(tab, this->pointList);
	// }
	// /* --------------------------------------------------------------------------
	// */

	// void Bridging::filterRejectedContinuumOwners(
	// std::vector<std::vector<UInt>> &unassociated_atoms) {

	// if (this->comm_group_A == this->comm_group_B)
	// return;

	// if (this->in_group_B) {
	// DUMP("local points", DBG_MESSAGE);
	// if (this->local_points == 0)
	// return;

	// UInt offset = 0;
	// // recompute indexes of continuum atoms
	// std::vector<int> current_indexes(this->pointToElement.size());
	// {
	// UInt indirection = 0;
	// for (UInt at = 0; at < this->pointToElement.size(); ++at) {
	// current_indexes[at] = -1;
	// if (this->pointToElement[at] == UINT_MAX)
	// continue;
	// current_indexes[at] = indirection;
	// ++indirection;
	// }
	// LM_ASSERT(indirection == this->local_points, "this should not happend "
	// << indirection << " "
	// <<
	// this->local_points);
	// }
	// // remove unassociated atoms
	// {
	// offset = 0;
	// UInt cpt = 0;
	// for (UInt i = 0; i < this->nb_zone_A; ++i) {
	// if (this->com_with[i]) {
	// DUMP("atomic processor " << i << " unassociated "
	// << unassociated_atoms[i].size() << " atoms
	// ",
	// DBG_INFO_STARTUP);
	// UInt size = unassociated_atoms[i].size();
	// for (UInt j = 0; j < size; ++j) {
	// // get element that owned the atom
	// UInt at_index = offset + unassociated_atoms[i][j];
	// LM_ASSERT(this->pointToElement[at_index] != UINT_MAX,
	// "this should not happend !! " << at_index);
	// LM_ASSERT(current_indexes[at_index] != -1,
	// "this should not happend !! " << at_index);

	// UInt el = this->pointToElement[at_index];
	// this->smatrix->removeAtom(current_indexes[at_index], el);
	// this->pointToElement[at_index] = UINT_MAX;
	// ++cpt;
	// DUMP("unassociated atom at position "
	// << at_index << " whereas offset = " << offset
	// << " next offset is "
	// << offset + this->nb_points_per_proc[i],
	// DBG_INFO_STARTUP);
	// }
	// offset += this->nb_points_per_proc[i];
	// }
	// }
	// if (cpt) {
	// DUMP("removed " << cpt
	// << " atoms from unassociation. Now local atoms is "
	// << this->local_points,
	// DBG_MESSAGE);
	// this->local_points -= cpt;
	// DUMP("and becomes " << this->local_points, DBG_MESSAGE);
	// }
	// }
	// // little check
	// {
	// UInt cpt_tmp = 0;
	// for (UInt i = 0; i < this->pointToElement.size(); ++i)
	// if (this->pointToElement[i] != UINT_MAX)
	// cpt_tmp++;

	// if (cpt_tmp != this->local_points)
	// LM_FATAL("biip this should not happend " << cpt_tmp << " "
	// << this->local_points);
	// }
	// // now renumber indirection in shapematrix
	// {
	// UInt indirection = 0;
	// for (UInt at = 0; at < this->pointToElement.size(); ++at) {
	// if (this->pointToElement[at] == UINT_MAX)
	// continue;
	// LM_ASSERT(current_indexes[at] != -1, "This should not happend");
	// this->smatrix->changeAtomIndirection(this->pointToElement[at],
	// current_indexes[at],
	// indirection);
	// ++indirection;
	// }
	// this->smatrix->swapAtomIndirections();
	// }
	// // //now i set the duo vector
	// this->createDuoVectorB("FE");
	// // std::stringstream sstr;
	// // sstr << "duoFE-" << this->getID();
	// // DuoDistributedVector & duo =
	// // this->createDuoVector(this->local_points,this->total_points);

	// // UInt counter = 0;
	// // offset = 0;
	// // for (UInt i = 0 ; i < this->nb_zone_A ; ++i)
	// // if (this->com_with[i]){
	// // for (UInt j = 0 ; j < this->nb_points_per_proc[i] ; ++j)
	// // if (this->pointToElement[j+offset] != UINT_MAX){
	// // duo.setDuoProc(counter,i);
	// // ++counter;
	// // }
	// // DUMP("compteur is " << counter << " after treating atoms from "
	// <<
	// i
	// // << " offset is " << offset,DBG_INFO_STARTUP);
	// // offset += this->nb_points_per_proc[i];
	// // }
	// }
	// }

	/* -------------------------------------------------------------------------- */

	// void Bridging::updateForMigration() {

	// DUMPBYPROC("update migration for " << this->getID(), DBG_INFO, 0);

	// STARTTIMER("syncMigration resize");
	// // update local number of atoms in atomic part
	// if (this->in_group_A) {
	// this->local_points = this->pointList.size();
	// this->positions.resize(DomainA::Dim * this->local_points);
	// }
	// STOPTIMER("syncMigration resize");

	// STARTTIMER("syncMigration duo");
	// this->synchronizeMigration(this->comm_group_A, this->comm_group_B);
	// STOPTIMER("syncMigration duo");

	// // pointList.setRelease(this->contA.getRelease());
	// // meshList.setRelease(this->contB.getRelease());
	// }
	/* -------------------------------------------------------------------------- */

	/* LMDESC Bridging
	This class implements a bridging zone where
	point and elements are associated. \\ \\

	For debugging pruposes, several set of DOf are registered to the central
	system:

	\begin{itemize}
	\item unmatched-fe-\${couplerID} : the set of nodes and elements
	that are contained in the geometry provided by GEOMETRY keyword.
	\item unmatched-point-\${couplerID} : the set of points
	that are contained in the geometry provided by GEOMETRY keyword.
	\item matched-fe-\${couplerID} : the set of nodes and elements
	that are containing at least one point of unmatched-point-\${couplerID}.
	\item matched-point-\${couplerID} : the set of points
	that are contained in at least one element of unmatched-fe-\${couplerID}.
	\end{itemize}
	*/

	/* LMHERITANCE filter_geometry dof_association */

	// void Bridging::declareParams() {
	// this->addSubParsableObject(unmatchedMeshList);
	// DofAssociationInterface::declareParams();
	// }
	/* -------------------------------------------------------------------------- */
	// template <typename ContA, typename ContB>
	// Bridging<ContA, ContB> &Bridging::cast() {
	// return static_cast<Bridging<ContA, ContB> &>(*this);
	// }

	__END_LIBMULTISCALE__

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