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filter_dislo.cc
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Created
Wed, Sep 11, 01:45
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Fri, Sep 13, 01:45 (2 d)
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rLIBMULTISCALE LibMultiScale
filter_dislo.cc
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/**
* @file filter_dislo.cc
*
* @author Guillaume Anciaux <guillaume.anciaux@epfl.ch>
*
* @date Wed Jul 09 21:59:47 2014
*
* @brief Select atoms based on centro symmetry criterion
*
* @section LICENSE
*
* Copyright INRIA and CEA
*
* The LibMultiScale is a C++ parallel framework for the multiscale
* coupling methods dedicated to material simulations. This framework
* provides an API which makes it possible to program coupled simulations
* and integration of already existing codes.
*
* This Project was initiated in a collaboration between INRIA Futurs Bordeaux
* within ScAlApplix team and CEA/DPTA Ile de France.
* The project is now continued at the Ecole Polytechnique Fédérale de Lausanne
* within the LSMS/ENAC laboratory.
*
* This software is governed by the CeCILL-C license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL-C
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited
* liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
*
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL-C license and that you accept its terms.
*
*/
/* -------------------------------------------------------------------------- */
#include "filter_dislo.hh"
#include "compute_centro_symmetry.hh"
#include "lib_continuum.hh"
#include "lib_dd.hh"
#include "lib_md.hh"
#include "lm_common.hh"
#include "ref_point_data.hh"
/* -------------------------------------------------------------------------- */
__BEGIN_LIBMULTISCALE__
template
<
typename
Cont
>
void
FilterDislo
::
build
(
Cont
&
cont
)
{
auto
&
output
=
this
->
getOutput
(
"output"
).
get
<
typename
Cont
::
ContainerSubset
>
();
#ifndef LM_OPTIMIZED
constexpr
UInt
Dim
=
Cont
::
Dim
;
LM_ASSERT
(
Dim
==
3
,
"cannot work if not in 3D!"
);
#endif
output
.
clear
();
compute
.
build
(
cont
);
auto
it
=
cont
.
begin
();
auto
end
=
cont
.
end
();
auto
it_centro
=
compute
.
evalArrayOutput
().
begin
();
Real
max
=
0.0
;
for
(;
it
!=
end
;
++
it
,
++
it_centro
)
{
auto
at
=
*
it
;
auto
value
=
*
it_centro
;
if
(
value
>
epsilon
[
0
]
&&
value
<
epsilon
[
1
])
{
output
.
push_back
(
at
);
if
(
value
>
max
)
max
=
value
;
}
}
UInt
nb
=
output
.
size
();
DUMP
(
"le filtre a trouve "
<<
nb
<<
" atoms et max = "
<<
max
<<
" threshold = "
<<
epsilon
,
DBG_MESSAGE
);
}
/* -------------------------------------------------------------------------- */
/* LMDESC DISLO
This filter allows to extract a set of atoms based on the
centro-symmetry criterion (see compute \ref{computecentrosymmetry}).
*/
/* LMEXAMPLE FILTERDISLO -FEPSILON 0.5 */
/* LMHERITANCE compute_centro_symmetry */
void
FilterDislo
::
declareParams
()
{
this
->
addSubParsableObject
(
compute
);
/* LMKEYWORD EPSILON
Specifies the lower and upper bounds for the centrosymmetry. Only values
in the range {epsilon[0], epsilon[1]} are output by this filter
*/
this
->
parseVectorKeyword
(
"EPSILON"
,
2
,
epsilon
);
}
/* -------------------------------------------------------------------------- */
FilterDislo
::
FilterDislo
(
const
std
::
string
&
name
)
:
LMObject
(
name
),
compute
(
"ComputeCentroSymmetry:"
+
name
)
{
epsilon
[
0
]
=
0.0
;
epsilon
[
1
]
=
1e300
;
}
/* -------------------------------------------------------------------------- */
FilterDislo
::~
FilterDislo
()
{}
/* -------------------------------------------------------------------------- */
DECLARE_COMPUTE_MAKE_CALL
(
FilterDislo
)
__END_LIBMULTISCALE__
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