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medco-deployment/docker-images/i2b2/Dockerfile
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FROM jboss/wildfly:10.0.0.Final
# run-time variables
ENV I2B2_DB_HOST="postgresql-server" \
I2B2_DB_PORT="5432" \
I2B2_DB_USER="i2b2" \
I2B2_DB_PW="i2b2" \
I2B2_DB_NAME="i2b2"
ENV WILDFLY_ADMIN_PASSWORD="admin" \
I2B2_DOMAIN_NAME="i2b2demo"
# build-time variables
ENV JBOSS_WAR_DEPLOYMENTS="$JBOSS_HOME/standalone/deployments" \
AXIS2_VERSION="1.7.1" \
AXIS2_LOGLEVEL="DEBUG" \
I2B2_SRC_DIR="/i2b2-src" \
I2B2_SQL_DIR="/i2b2-sql" \
I2B2_DATA_DIR="/i2b2-data" \
I2B2_PATCHES_DIR="/i2b2-patches" \
I2B2_VERSION="tags/v1.7.10.0001" \
I2B2_DATA_VERSION="tags/v1.7.10.0002" \
I2B2_FR_FILES_DIR="$JBOSS_HOME/standalone/data/i2b2_FR_files" \
PG_JDBC_JAR="postgresql-42.1.4.jar" \
I2B2_SERVICE_PASSWORD="pFjy3EjDVwLfT2rB9xkK"
# todo: I2B2_SERVICE_PASSWORD is hard-coded in 10-i2b2-pm-configuration.sh
# pre-requisites: packages & wildfly config
USER root
RUN sed -i 's/Xmx512m/Xmx2048m/g' $JBOSS_HOME/bin/standalone.conf && \
sed -i 's/MaxMetaspaceSize=256m/MaxMetaspaceSize=1024m/g' $JBOSS_HOME/bin/standalone.conf && \
yum update -y && \
yum -y install wget git ant postgresql && \
yum clean all
COPY install-i2b2.sh docker-entrypoint.sh write-i2b2-datasources.sh /usr/local/bin/
RUN chmod +x /usr/local/bin/install-i2b2.sh /usr/local/bin/docker-entrypoint.sh /usr/local/bin/write-i2b2-datasources.sh
COPY sql "$I2B2_SQL_DIR"
COPY patches "$I2B2_PATCHES_DIR"
RUN mkdir -p "$I2B2_SRC_DIR" "$I2B2_DATA_DIR" && \
chown -R jboss:jboss "$I2B2_SRC_DIR" "$I2B2_DATA_DIR"
USER jboss
# install i2b2
RUN install-i2b2.sh
# run
EXPOSE 8080 9990
ENTRYPOINT docker-entrypoint.sh
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