docker-entrypoint.sh
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	#!/usr/bin/env bash
	set -Eeuo pipefail

	# wait for postgres to be available
	export PGPASSWORD="$I2B2_DB_PW"
	export PSQL_PARAMS="-v ON_ERROR_STOP=1 -h ${I2B2_DB_HOST} -p ${I2B2_DB_PORT} -U ${I2B2_DB_USER}"
	until psql $PSQL_PARAMS -d postgres -c '\q'; do
	>&2 echo "Waiting for postgresql..."
	sleep 1
	done

	# load initial data if database does not exist (credentials must be valid and have create database right)
	DB_CHECK=`psql $PSQL_PARAMS -d postgres -X -A -t -c "select count(*) from pg_database where datname = '${I2B2_DB_NAME}';"`
	if [ "$DB_CHECK" -ne "1" ]; then
	echo "Initialising i2b2 database"
	psql $PSQL_PARAMS -d postgres <<-EOSQL
	CREATE DATABASE ${I2B2_DB_NAME};
	EOSQL

	# get the i2b2 data
	pushd "$I2B2_DATA_DIR"
	git clone --depth 1 --branch $I2B2_DATA_VERSION https://github.com/i2b2/i2b2-data.git .
	popd

	# run loading scripts
	for f in "$I2B2_SQL_DIR"/*.sh; do
	bash "$f"
	done
	fi

	# execute pre-init scripts & run wildfly
	for f in "$PRE_INIT_SCRIPT_DIR"/*.sh; do
	bash "$f"
	done
	exec /opt/jboss/wildfly/bin/standalone.sh -b 0.0.0.0 -bmanagement 0.0.0.0